Wall clock time and date at job start Tue Mar 31 2020 20:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47094 * 2 1 4 4 C 1.50698 * 119.99953 * 275.00001 * 3 2 1 5 5 C 1.32998 * 119.99819 * 95.00060 * 3 2 1 6 6 C 1.47100 * 119.99759 * 174.45407 * 5 3 2 7 7 O 1.21615 * 120.00002 * 5.27699 * 6 5 3 8 8 N 1.34775 * 119.99572 * 185.27599 * 6 5 3 9 9 C 1.46505 * 119.99842 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.37023 * 327.18589 * 9 8 6 11 11 C 1.54268 * 110.32258 * 89.36153 * 9 8 6 12 12 C 1.54379 * 105.05678 * 118.89424 * 11 9 8 13 13 N 1.48563 * 104.59742 * 23.85809 * 12 11 9 14 14 C 1.46899 * 111.00174 * 200.95670 * 13 12 11 15 15 C 1.50696 * 109.46937 * 279.66498 * 14 13 12 16 16 O 1.21286 * 120.00167 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99836 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00211 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99721 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99712 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 60.00080 * 22 20 18 24 24 H 1.48505 * 109.46763 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47250 * 299.99489 * 22 20 18 26 26 C 1.48566 * 104.22062 * 320.51285 * 13 12 11 27 27 H 1.08999 * 110.40976 * 280.70838 * 26 13 12 28 28 C 1.52991 * 110.41459 * 158.26258 * 26 13 12 29 29 C 1.52997 * 109.47424 * 174.29653 * 28 26 13 30 30 H 1.08994 * 109.46955 * 299.99726 * 1 2 3 31 31 H 1.08996 * 109.46814 * 59.99951 * 1 2 3 32 32 H 1.08995 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47490 * 240.00128 * 2 1 3 34 34 H 1.09000 * 109.47455 * 120.00388 * 2 1 3 35 35 H 1.08998 * 109.47411 * 244.28730 * 4 3 2 36 36 H 1.08995 * 109.47087 * 4.29342 * 4 3 2 37 37 H 1.09002 * 109.46777 * 124.29202 * 4 3 2 38 38 H 1.08004 * 119.99721 * 354.45601 * 5 3 2 39 39 H 0.97003 * 120.00227 * 0.02562 * 8 6 5 40 40 H 1.08993 * 110.32584 * 237.79600 * 11 9 8 41 41 H 1.09003 * 110.32207 * 0.02562 * 11 9 8 42 42 H 1.08997 * 110.41337 * 265.07537 * 12 11 9 43 43 H 1.09001 * 110.40812 * 142.62801 * 12 11 9 44 44 H 1.08999 * 109.46872 * 39.66823 * 14 13 12 45 45 H 1.09004 * 109.47130 * 159.65990 * 14 13 12 46 46 H 0.97003 * 119.99849 * 359.97438 * 17 15 14 47 47 H 0.97006 * 119.99206 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46726 * 294.29098 * 28 26 13 49 49 H 1.08991 * 109.47175 * 54.28618 * 28 26 13 50 50 H 1.08998 * 109.47481 * 65.22333 * 29 28 26 51 51 H 1.09002 * 109.47383 * 185.23676 * 29 28 26 52 52 H 1.09008 * 109.46508 * 305.22775 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3487 2.0143 1.1474 6 6 2.9532 3.3553 1.1397 7 8 3.0756 3.9611 0.0922 8 7 3.3713 3.9126 2.2934 9 6 3.9738 5.2480 2.2856 10 1 4.5264 5.4095 1.3601 11 6 2.8853 6.3280 2.4550 12 6 3.2510 7.0645 3.7616 13 7 4.7094 6.8339 3.9258 14 6 5.1190 7.0275 5.3232 15 6 5.2771 8.5002 5.6009 16 8 5.0695 9.3089 4.7212 17 7 5.6502 8.9185 6.8265 18 6 5.7935 10.2584 7.0793 19 1 5.6078 10.9786 6.2962 20 6 6.1776 10.6897 8.3431 21 7 6.4031 9.8134 9.2961 22 14 6.3736 12.5153 8.6874 23 1 5.0801 13.2053 8.4505 24 1 6.7883 12.7109 10.0999 25 1 7.4088 13.0808 7.7854 26 6 4.9056 5.4230 3.5040 27 1 4.6157 4.7430 4.3050 28 6 6.3620 5.1841 3.1007 29 6 6.5728 3.6974 2.8074 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.2276 2.3997 -1.4722 36 1 1.8008 1.5533 -2.1173 37 1 1.6045 3.0958 -1.2511 38 1 2.1617 1.5116 2.0849 39 1 3.2739 3.4293 3.1287 40 1 2.9037 7.0194 1.6127 41 1 1.9028 5.8644 2.5444 42 1 2.7022 6.6414 4.6029 43 1 3.0429 8.1303 3.6681 44 1 4.3592 6.6123 5.9853 45 1 6.0684 6.5209 5.4970 46 1 5.8166 8.2717 7.5300 47 1 6.6716 10.1146 10.1783 48 1 6.5920 5.7666 2.2084 49 1 7.0192 5.4909 3.9142 50 1 5.9851 3.4122 1.9348 51 1 7.6288 3.5120 2.6108 52 1 6.2546 3.1087 3.6679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707190709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:35 Heat of formation + Delta-G solvation = -86.830519 kcal Electronic energy + Delta-G solvation = -29542.644215 eV Core-core repulsion = 25540.946844 eV Total energy + Delta-G solvation = -4001.697372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40999 -40.36384 -39.35820 -37.08896 -35.99516 -35.33697 -34.31482 -33.28717 -32.38120 -31.63670 -29.09032 -28.55851 -27.69532 -26.02094 -24.98486 -23.83826 -22.72237 -21.59878 -21.39769 -20.83879 -19.86275 -19.45941 -17.94143 -17.80883 -17.39973 -16.65579 -16.46346 -16.24435 -15.90582 -15.70302 -15.55297 -15.39610 -15.34774 -14.88405 -14.78693 -14.40574 -14.28500 -13.98593 -13.88702 -13.63481 -13.47894 -13.36976 -13.03775 -12.98359 -12.91213 -12.70887 -12.59942 -12.46091 -12.40493 -12.33666 -12.22718 -12.11934 -11.98681 -11.81522 -11.72303 -11.54691 -11.46970 -10.57844 -10.34275 -10.25077 -9.99046 -9.79245 -9.38476 -8.45240 -5.93483 0.45238 1.39782 1.41322 1.52035 2.08321 2.14213 2.31201 2.35559 2.84819 3.21148 3.35761 3.41318 3.75282 3.77620 3.92607 4.00509 4.08480 4.19745 4.24747 4.29013 4.35230 4.38274 4.38703 4.46400 4.51818 4.55038 4.58246 4.64622 4.68288 4.78047 4.87490 4.89604 4.98667 5.00419 5.05816 5.08364 5.12148 5.16868 5.18563 5.26814 5.38410 5.40067 5.42287 5.49834 5.60434 5.64124 5.84210 5.96121 6.09373 6.63085 6.66432 7.15159 7.35317 7.59004 8.16017 8.71933 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027418 B = 0.001943 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.991834 B =14409.375622 C =14594.715985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.239 4.239 6 C 0.540 3.460 7 O -0.579 6.579 8 N -0.705 5.705 9 C 0.161 3.839 10 H 0.079 0.921 11 C -0.124 4.124 12 C 0.041 3.959 13 N -0.504 5.504 14 C 0.050 3.950 15 C 0.443 3.557 16 O -0.617 6.617 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.065 3.935 27 H 0.081 0.919 28 C -0.109 4.109 29 C -0.138 4.138 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.153 0.847 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.048 0.952 51 H 0.060 0.940 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 -25.493 -12.406 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.028 4.028 4 C -0.171 4.171 5 C -0.259 4.259 6 C 0.331 3.669 7 O -0.461 6.461 8 N -0.357 5.357 9 C 0.055 3.945 10 H 0.097 0.903 11 C -0.163 4.163 12 C -0.087 4.087 13 N -0.229 5.229 14 C -0.082 4.082 15 C 0.230 3.770 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.044 4.044 27 H 0.099 0.901 28 C -0.147 4.147 29 C -0.196 4.196 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.171 0.829 39 H 0.250 0.750 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.079 0.921 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.432 -24.118 -13.814 29.045 hybrid contribution -0.153 0.572 1.561 1.669 sum -8.585 -23.545 -12.253 27.897 Atomic orbital electron populations 1.21724 0.93774 1.02833 1.02112 1.20832 0.96871 0.90789 1.04540 1.22807 0.89210 0.96057 0.94710 1.20950 1.02249 0.99284 0.94571 1.22468 1.08186 0.94925 1.00362 1.19063 0.77826 0.86996 0.83001 1.90788 1.57710 1.65366 1.32245 1.45836 1.62085 1.17537 1.10226 1.21369 0.92699 0.81963 0.98512 0.90265 1.22650 0.99266 0.97451 0.96914 1.23046 0.87731 1.00507 0.97372 1.64911 1.16857 1.21500 1.19617 1.21901 1.03228 0.92779 0.90279 1.20792 0.82146 0.91636 0.82441 1.90493 1.56306 1.57232 1.46207 1.41910 1.60915 1.07676 1.10847 1.19594 1.45358 0.84073 0.97179 0.90574 1.25994 0.96352 1.04231 0.94634 1.69664 1.46885 1.35850 1.03690 0.85022 0.78728 0.77225 0.77550 1.19825 1.19371 1.19898 1.22948 0.96253 0.88966 0.96196 0.90099 1.21448 0.94112 0.97728 1.01436 1.21670 1.01868 0.94209 1.01871 0.92648 0.92885 0.90752 0.89464 0.89228 0.91797 0.91193 0.91997 0.82899 0.74965 0.92030 0.89721 0.92610 0.92519 0.90526 0.87262 0.77013 0.91342 0.92893 0.91902 0.93249 0.92080 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.90 71.98 0.71 -0.35 16 2 C -0.09 -0.72 6.03 29.85 0.18 -0.54 16 3 C -0.03 -0.35 5.36 -17.62 -0.09 -0.45 16 4 C -0.11 -1.98 8.34 71.24 0.59 -1.39 16 5 C -0.24 -3.39 9.61 23.43 0.23 -3.16 16 6 C 0.54 11.20 7.73 86.57 0.67 11.87 16 7 O -0.58 -16.65 12.75 -4.08 -0.05 -16.70 16 8 N -0.71 -12.33 4.76 -441.87 -2.10 -14.44 16 9 C 0.16 3.79 2.40 45.89 0.11 3.90 16 10 H 0.08 2.28 7.15 -2.39 -0.02 2.26 16 11 C -0.12 -3.26 6.79 31.49 0.21 -3.05 16 12 C 0.04 1.28 6.08 86.45 0.53 1.81 16 13 N -0.50 -16.40 4.56 -861.24 -3.93 -20.33 16 14 C 0.05 1.70 5.31 85.56 0.45 2.15 16 15 C 0.44 21.38 7.69 87.66 0.67 22.06 16 16 O -0.62 -35.16 15.29 -3.05 -0.05 -35.21 16 17 N -0.58 -29.76 5.29 -306.99 -1.62 -31.38 16 18 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 22 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.06 1.52 1.95 45.06 0.09 1.60 16 27 H 0.08 1.49 7.61 -2.39 -0.02 1.47 16 28 C -0.11 -2.52 5.58 30.59 0.17 -2.35 16 29 C -0.14 -2.39 9.72 71.98 0.70 -1.69 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.47 8.03 -2.39 -0.02 0.45 16 35 H 0.06 1.35 7.31 -2.39 -0.02 1.33 16 36 H 0.07 0.89 8.01 -2.39 -0.02 0.87 16 37 H 0.06 1.35 7.15 -2.39 -0.02 1.33 16 38 H 0.15 1.23 8.05 -2.91 -0.02 1.20 16 39 H 0.41 4.70 8.36 -92.71 -0.78 3.93 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.96 7.95 -2.39 -0.02 1.94 16 42 H 0.06 1.52 7.67 -2.39 -0.02 1.51 16 43 H 0.06 2.18 7.66 -2.39 -0.02 2.16 16 44 H 0.08 2.26 7.64 -2.39 -0.02 2.24 16 45 H 0.11 3.29 7.02 -2.39 -0.02 3.27 16 46 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 47 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 48 H 0.05 1.42 7.95 -2.38 -0.02 1.41 16 49 H 0.06 1.52 7.18 -2.39 -0.02 1.51 16 50 H 0.05 0.91 7.54 -2.39 -0.02 0.89 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -73.57 416.84 0.47 -73.10 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.59 Total: 36.99 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.50 Total: 11.91 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -7.37 Total: -115.57 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.10 Total: -51.91 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.57 0.47 -73.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707190709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.728 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds