Wall clock time and date at job start Tue Mar 31 2020 20:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46859 * 2 1 4 4 H 1.09006 * 110.36593 * 57.41109 * 3 2 1 5 5 C 1.54380 * 110.41362 * 295.05926 * 3 2 1 6 6 H 1.09005 * 110.31972 * 336.26359 * 5 3 2 7 7 N 1.46499 * 110.32355 * 98.36692 * 5 3 2 8 8 C 1.34780 * 120.00012 * 204.99748 * 7 5 3 9 9 O 1.21280 * 119.99546 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00013 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47204 * 180.02562 * 10 8 7 12 12 C 1.53774 * 113.61638 * 274.13343 * 11 10 8 13 13 C 1.53951 * 87.02472 * 220.04581 * 12 11 10 14 14 C 1.53776 * 113.61704 * 176.52548 * 11 10 8 15 15 C 1.54260 * 105.05875 * 217.36690 * 5 3 2 16 16 C 1.54380 * 105.06215 * 0.02562 * 15 5 3 17 17 N 1.48557 * 110.41096 * 179.75693 * 3 2 1 18 18 C 1.46903 * 111.00255 * 277.81957 * 17 3 2 19 19 C 1.50698 * 109.47180 * 164.12993 * 18 17 3 20 20 O 1.21288 * 119.99875 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99954 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00184 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00013 * 359.97438 * 22 21 19 24 24 C 1.38943 * 120.00133 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00152 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00256 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46852 * 89.99932 * 26 24 22 28 28 H 1.48491 * 109.47467 * 210.00224 * 26 24 22 29 29 H 1.48508 * 109.47062 * 330.00427 * 26 24 22 30 30 H 1.08994 * 109.47560 * 305.80438 * 1 2 3 31 31 H 1.08999 * 109.46682 * 185.80399 * 1 2 3 32 32 H 1.09000 * 109.46958 * 65.81140 * 1 2 3 33 33 H 1.08998 * 109.47135 * 119.99866 * 2 1 3 34 34 H 1.09001 * 109.47451 * 240.00395 * 2 1 3 35 35 H 0.97002 * 120.00081 * 25.00920 * 7 5 3 36 36 H 1.09007 * 109.47175 * 300.00021 * 10 8 7 37 37 H 1.08997 * 109.47546 * 59.99631 * 10 8 7 38 38 H 1.09005 * 112.84640 * 45.33240 * 11 10 8 39 39 H 1.09007 * 113.61417 * 334.56714 * 12 11 10 40 40 H 1.09001 * 113.61575 * 105.46279 * 12 11 10 41 41 H 1.08996 * 113.54022 * 270.81564 * 13 12 11 42 42 H 1.09003 * 113.74230 * 139.94121 * 13 12 11 43 43 H 1.09000 * 113.61888 * 254.52910 * 14 11 10 44 44 H 1.09006 * 113.61317 * 25.34804 * 14 11 10 45 45 H 1.09002 * 110.31844 * 118.89473 * 15 5 3 46 46 H 1.08994 * 110.32481 * 241.10058 * 15 5 3 47 47 H 1.08999 * 110.41332 * 142.63165 * 16 15 5 48 48 H 1.08998 * 110.41050 * 265.07713 * 16 15 5 49 49 H 1.08997 * 109.47174 * 284.13272 * 18 17 3 50 50 H 1.09003 * 109.46884 * 44.13144 * 18 17 3 51 51 H 0.97005 * 119.99961 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00057 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6475 1.9837 0.8610 5 6 1.6417 2.1545 -1.3107 6 1 1.4728 1.4240 -2.1020 7 7 0.4398 2.9663 -1.1038 8 6 -0.3643 3.2573 -2.1455 9 8 -0.0932 2.8467 -3.2540 10 6 -1.6003 4.0928 -1.9328 11 6 -2.3297 4.2730 -3.2656 12 6 -1.8074 5.4553 -4.0988 13 6 -3.2759 5.7477 -4.4568 14 6 -3.6550 5.0433 -3.1434 15 6 2.8451 3.0542 -1.6598 16 6 3.8696 2.8096 -0.5310 17 7 3.5253 1.4670 0.0059 18 6 4.0494 1.2910 1.3669 19 6 5.5117 0.9328 1.2998 20 8 6.0631 0.8343 0.2240 21 7 6.2067 0.7219 2.4351 22 6 7.5370 0.3966 2.3741 23 1 8.0281 0.3089 1.4162 24 6 8.2533 0.1787 3.5446 25 7 9.5285 -0.1337 3.4861 26 14 7.4039 0.3296 5.2014 27 1 6.8438 -0.9890 5.5924 28 1 8.3863 0.7728 6.2229 29 1 6.3060 1.3251 5.1059 30 1 -0.3634 0.6012 0.8334 31 1 -0.3633 -1.0224 0.1039 32 1 -0.3633 0.4211 -0.9374 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.2229 3.2945 -0.2171 36 1 -2.2593 3.5926 -1.2231 37 1 -1.3159 5.0686 -1.5390 38 1 -2.4147 3.3446 -3.8304 39 1 -1.3395 6.2377 -3.5011 40 1 -1.2006 5.1535 -4.9525 41 1 -3.6194 5.2232 -5.3484 42 1 -3.5215 6.8096 -4.4693 43 1 -4.5378 4.4094 -3.2270 44 1 -3.6938 5.7117 -2.2832 45 1 3.2669 2.7653 -2.6225 46 1 2.5427 4.1012 -1.6768 47 1 4.8836 2.8117 -0.9309 48 1 3.7654 3.5656 0.2472 49 1 3.9279 2.2188 1.9259 50 1 3.5021 0.4916 1.8665 51 1 5.7657 0.8011 3.2955 52 1 10.0287 -0.2855 4.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707191964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:18 Heat of formation + Delta-G solvation = -51.986188 kcal Electronic energy + Delta-G solvation = -29699.302964 eV Core-core repulsion = 25699.116556 eV Total energy + Delta-G solvation = -4000.186408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.57293 -39.49607 -38.45502 -37.71196 -34.56423 -33.86640 -33.40165 -31.79268 -31.50176 -30.30938 -27.61972 -26.65453 -25.93672 -24.37110 -23.80996 -22.83926 -21.46097 -20.47456 -20.03120 -19.68814 -19.31780 -18.32376 -17.21095 -16.78759 -16.09538 -15.95658 -15.54318 -15.06873 -14.97425 -14.86062 -14.74200 -14.43199 -14.30178 -13.61742 -13.54321 -13.30804 -13.16437 -13.07678 -12.79902 -12.64567 -12.45293 -12.22657 -12.08561 -12.03073 -11.82136 -11.63007 -11.42561 -11.39227 -11.19831 -11.07851 -10.98809 -10.75124 -10.68235 -10.59447 -10.56853 -10.53206 -9.96463 -9.92628 -9.54417 -9.18676 -8.66351 -8.16644 -8.11977 -6.29368 -3.80617 2.46806 2.90119 3.01655 3.06493 3.14708 3.75923 3.91870 4.10911 4.19254 4.27815 4.34472 4.37218 4.52152 4.56428 4.71105 4.86813 4.96892 4.98254 5.08746 5.11176 5.13943 5.20251 5.22255 5.25218 5.35103 5.35736 5.39948 5.40023 5.53242 5.54357 5.57740 5.62532 5.65549 5.75825 5.77641 5.89048 5.91745 5.93324 5.96163 6.07384 6.09777 6.17699 6.22677 6.31338 6.34324 7.00126 7.05116 7.29616 7.60175 8.05462 8.16418 8.62584 8.97657 9.44463 9.86579 10.83941 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002026 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.766442 B =13817.096795 C =14081.795430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.053 0.947 5 C 0.148 3.852 6 H 0.102 0.898 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.535 6.535 10 C -0.133 4.133 11 C -0.094 4.094 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.132 4.132 16 C 0.038 3.962 17 N -0.476 5.476 18 C 0.033 3.967 19 C 0.455 3.545 20 O -0.555 6.555 21 N -0.594 5.594 22 C -0.303 4.303 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.883 5.883 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.271 1.271 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.397 0.603 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.039 0.961 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.280 10.578 -5.964 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.053 4.053 4 H 0.071 0.929 5 C 0.043 3.957 6 H 0.120 0.880 7 N -0.377 5.377 8 C 0.300 3.700 9 O -0.411 6.411 10 C -0.173 4.173 11 C -0.113 4.113 12 C -0.172 4.172 13 C -0.181 4.181 14 C -0.176 4.176 15 C -0.171 4.171 16 C -0.090 4.090 17 N -0.200 5.200 18 C -0.099 4.099 19 C 0.241 3.759 20 O -0.435 6.435 21 N -0.235 5.235 22 C -0.431 4.431 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.523 5.523 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.201 0.799 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.244 9.716 -7.721 29.938 hybrid contribution -0.796 0.911 2.656 2.918 sum -28.040 10.626 -5.066 30.411 Atomic orbital electron populations 1.21753 0.95734 1.01559 1.01539 1.21457 0.94924 0.94983 1.03466 1.22931 0.89640 0.96785 0.95900 0.92928 1.21699 0.83658 0.92618 0.97755 0.88008 1.46200 1.25724 1.54463 1.11269 1.20694 0.84426 0.80405 0.84519 1.90714 1.73709 1.52766 1.23894 1.21720 0.95039 1.00620 0.99897 1.22327 0.95090 0.98991 0.94864 1.22966 0.96291 0.97568 1.00382 1.22827 0.96945 1.00551 0.97754 1.22981 0.97201 0.99223 0.98204 1.22736 0.95090 0.99409 0.99900 1.23183 1.00982 0.88716 0.96092 1.65011 1.05562 1.29383 1.20066 1.22105 0.96491 1.01184 0.90166 1.19586 0.87368 0.84115 0.84871 1.90566 1.70373 1.54415 1.28165 1.42207 1.10855 1.64149 1.06244 1.19420 0.83011 1.43802 0.96902 0.86296 1.25028 0.95535 0.97658 0.98007 1.69623 1.07071 1.46806 1.28801 0.86678 0.79567 0.78746 0.84400 1.19644 1.20241 1.19630 0.93151 0.92606 0.92705 0.91515 0.90620 0.76890 0.88870 0.88967 0.88259 0.90439 0.91147 0.90230 0.91559 0.91471 0.90136 0.90193 0.91178 0.88599 0.94288 0.92951 0.89280 0.79852 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.52 37.16 0.35 -0.95 16 2 C -0.11 -1.23 5.55 -26.73 -0.15 -1.38 16 3 C 0.06 0.65 2.01 -66.07 -0.13 0.52 16 4 H 0.05 0.52 7.60 -51.93 -0.39 0.12 16 5 C 0.15 1.66 2.18 -66.55 -0.14 1.51 16 6 H 0.10 1.36 7.23 -51.93 -0.38 0.98 16 7 N -0.72 -6.11 4.64 -52.47 -0.24 -6.35 16 8 C 0.51 4.92 7.83 -10.99 -0.09 4.84 16 9 O -0.53 -7.37 15.44 5.56 0.09 -7.29 16 10 C -0.13 -0.83 5.52 -27.89 -0.15 -0.98 16 11 C -0.09 -0.68 3.11 -89.82 -0.28 -0.96 16 12 C -0.13 -1.01 7.65 -25.83 -0.20 -1.20 16 13 C -0.14 -0.88 8.09 -25.83 -0.21 -1.09 16 14 C -0.14 -0.77 7.65 -25.92 -0.20 -0.97 16 15 C -0.13 -1.64 6.79 -25.35 -0.17 -1.81 16 16 C 0.04 0.56 6.09 -2.13 -0.01 0.54 16 17 N -0.48 -7.37 4.56 -223.49 -1.02 -8.39 16 18 C 0.03 0.53 5.31 -4.98 -0.03 0.50 16 19 C 0.46 10.30 7.69 -10.99 -0.08 10.21 16 20 O -0.55 -14.92 15.31 5.55 0.08 -14.83 16 21 N -0.59 -14.10 5.09 -10.97 -0.06 -14.16 16 22 C -0.30 -8.56 10.16 -14.94 -0.15 -8.72 16 23 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 26 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 33 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 34 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.40 2.34 8.38 -40.82 -0.34 2.00 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.44 7.88 -51.93 -0.41 0.03 16 38 H 0.10 0.89 7.73 -51.93 -0.40 0.49 16 39 H 0.08 0.53 7.92 -51.92 -0.41 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 47 H 0.10 1.68 7.67 -51.93 -0.40 1.28 16 48 H 0.04 0.52 7.67 -51.93 -0.40 0.12 16 49 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 50 H 0.09 1.27 7.07 -51.93 -0.37 0.90 16 51 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 52 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -34.18 410.27 -9.73 -43.91 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -9.08 Total: 10.33 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.74 Total: 1.08 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.54 Total: -53.97 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.18 -9.73 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707191964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.080 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds