Wall clock time and date at job start Tue Mar 31 2020 20:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46859 * 2 1 4 4 H 1.09006 * 110.36593 * 57.41109 * 3 2 1 5 5 C 1.54380 * 110.41362 * 295.05926 * 3 2 1 6 6 H 1.09005 * 110.31972 * 336.26359 * 5 3 2 7 7 N 1.46499 * 110.32355 * 98.36692 * 5 3 2 8 8 C 1.34780 * 120.00012 * 204.99748 * 7 5 3 9 9 O 1.21280 * 119.99546 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00013 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47204 * 180.02562 * 10 8 7 12 12 C 1.53774 * 113.61638 * 274.13343 * 11 10 8 13 13 C 1.53951 * 87.02472 * 220.04581 * 12 11 10 14 14 C 1.53776 * 113.61704 * 176.52548 * 11 10 8 15 15 C 1.54260 * 105.05875 * 217.36690 * 5 3 2 16 16 C 1.54380 * 105.06215 * 0.02562 * 15 5 3 17 17 N 1.48557 * 110.41096 * 179.75693 * 3 2 1 18 18 C 1.46903 * 111.00255 * 277.81957 * 17 3 2 19 19 C 1.50698 * 109.47180 * 164.12993 * 18 17 3 20 20 O 1.21288 * 119.99875 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99954 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00184 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00013 * 359.97438 * 22 21 19 24 24 C 1.38943 * 120.00133 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00152 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00256 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46852 * 89.99932 * 26 24 22 28 28 H 1.48491 * 109.47467 * 210.00224 * 26 24 22 29 29 H 1.48508 * 109.47062 * 330.00427 * 26 24 22 30 30 H 1.08994 * 109.47560 * 305.80438 * 1 2 3 31 31 H 1.08999 * 109.46682 * 185.80399 * 1 2 3 32 32 H 1.09000 * 109.46958 * 65.81140 * 1 2 3 33 33 H 1.08998 * 109.47135 * 119.99866 * 2 1 3 34 34 H 1.09001 * 109.47451 * 240.00395 * 2 1 3 35 35 H 0.97002 * 120.00081 * 25.00920 * 7 5 3 36 36 H 1.09007 * 109.47175 * 300.00021 * 10 8 7 37 37 H 1.08997 * 109.47546 * 59.99631 * 10 8 7 38 38 H 1.09005 * 112.84640 * 45.33240 * 11 10 8 39 39 H 1.09007 * 113.61417 * 334.56714 * 12 11 10 40 40 H 1.09001 * 113.61575 * 105.46279 * 12 11 10 41 41 H 1.08996 * 113.54022 * 270.81564 * 13 12 11 42 42 H 1.09003 * 113.74230 * 139.94121 * 13 12 11 43 43 H 1.09000 * 113.61888 * 254.52910 * 14 11 10 44 44 H 1.09006 * 113.61317 * 25.34804 * 14 11 10 45 45 H 1.09002 * 110.31844 * 118.89473 * 15 5 3 46 46 H 1.08994 * 110.32481 * 241.10058 * 15 5 3 47 47 H 1.08999 * 110.41332 * 142.63165 * 16 15 5 48 48 H 1.08998 * 110.41050 * 265.07713 * 16 15 5 49 49 H 1.08997 * 109.47174 * 284.13272 * 18 17 3 50 50 H 1.09003 * 109.46884 * 44.13144 * 18 17 3 51 51 H 0.97005 * 119.99961 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00057 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6475 1.9837 0.8610 5 6 1.6417 2.1545 -1.3107 6 1 1.4728 1.4240 -2.1020 7 7 0.4398 2.9663 -1.1038 8 6 -0.3643 3.2573 -2.1455 9 8 -0.0932 2.8467 -3.2540 10 6 -1.6003 4.0928 -1.9328 11 6 -2.3297 4.2730 -3.2656 12 6 -1.8074 5.4553 -4.0988 13 6 -3.2759 5.7477 -4.4568 14 6 -3.6550 5.0433 -3.1434 15 6 2.8451 3.0542 -1.6598 16 6 3.8696 2.8096 -0.5310 17 7 3.5253 1.4670 0.0059 18 6 4.0494 1.2910 1.3669 19 6 5.5117 0.9328 1.2998 20 8 6.0631 0.8343 0.2240 21 7 6.2067 0.7219 2.4351 22 6 7.5370 0.3966 2.3741 23 1 8.0281 0.3089 1.4162 24 6 8.2533 0.1787 3.5446 25 7 9.5285 -0.1337 3.4861 26 14 7.4039 0.3296 5.2014 27 1 6.8438 -0.9890 5.5924 28 1 8.3863 0.7728 6.2229 29 1 6.3060 1.3251 5.1059 30 1 -0.3634 0.6012 0.8334 31 1 -0.3633 -1.0224 0.1039 32 1 -0.3633 0.4211 -0.9374 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.2229 3.2945 -0.2171 36 1 -2.2593 3.5926 -1.2231 37 1 -1.3159 5.0686 -1.5390 38 1 -2.4147 3.3446 -3.8304 39 1 -1.3395 6.2377 -3.5011 40 1 -1.2006 5.1535 -4.9525 41 1 -3.6194 5.2232 -5.3484 42 1 -3.5215 6.8096 -4.4693 43 1 -4.5378 4.4094 -3.2270 44 1 -3.6938 5.7117 -2.2832 45 1 3.2669 2.7653 -2.6225 46 1 2.5427 4.1012 -1.6768 47 1 4.8836 2.8117 -0.9309 48 1 3.7654 3.5656 0.2472 49 1 3.9279 2.2188 1.9259 50 1 3.5021 0.4916 1.8665 51 1 5.7657 0.8011 3.2955 52 1 10.0287 -0.2855 4.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707191964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:17 Heat of formation + Delta-G solvation = -77.501886 kcal Electronic energy + Delta-G solvation = -29700.409408 eV Core-core repulsion = 25699.116556 eV Total energy + Delta-G solvation = -4001.292852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45200 -40.53423 -39.67194 -38.80398 -36.04526 -35.37131 -34.29481 -33.74239 -32.58616 -31.07059 -28.67588 -28.01577 -26.42578 -25.87407 -24.72071 -23.65464 -22.49959 -21.45899 -21.20026 -20.84648 -20.21484 -20.15571 -18.05597 -17.74338 -17.58667 -16.77411 -16.68691 -16.39773 -16.20617 -15.95251 -15.58971 -15.41509 -15.22171 -14.99910 -14.84724 -14.56029 -14.22975 -14.19254 -13.93762 -13.80445 -13.50373 -13.25689 -13.02376 -12.93453 -12.76857 -12.69969 -12.47623 -12.38002 -12.36833 -12.26866 -11.98995 -11.97355 -11.81493 -11.52329 -11.48059 -11.46464 -11.21667 -11.03273 -10.70453 -10.42428 -10.22481 -10.01970 -9.37907 -8.39616 -6.00561 1.30189 1.36984 1.45493 1.74244 1.99351 2.12124 2.24496 2.70248 3.15389 3.23799 3.40720 3.67400 3.72276 3.78944 3.85438 4.00926 4.03099 4.06514 4.13561 4.16990 4.27551 4.31274 4.35508 4.44693 4.51852 4.56282 4.58878 4.62675 4.65461 4.77876 4.89949 4.90600 4.94345 5.00027 5.01956 5.06244 5.09181 5.12389 5.19441 5.20666 5.29706 5.42148 5.43436 5.48656 5.54750 5.67526 5.86793 5.94957 6.04485 6.61969 6.64425 6.91030 7.37142 7.42458 8.01408 8.78324 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026241 B = 0.002026 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.766442 B =13817.096795 C =14081.795430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.067 3.933 4 H 0.089 0.911 5 C 0.158 3.842 6 H 0.075 0.925 7 N -0.708 5.708 8 C 0.510 3.490 9 O -0.585 6.585 10 C -0.123 4.123 11 C -0.100 4.100 12 C -0.142 4.142 13 C -0.144 4.144 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.041 3.959 17 N -0.511 5.511 18 C 0.046 3.954 19 C 0.452 3.548 20 O -0.609 6.609 21 N -0.593 5.593 22 C -0.327 4.327 23 H 0.052 0.948 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.967 3.033 27 H -0.257 1.257 28 H -0.276 1.276 29 H -0.229 1.229 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.416 0.584 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.389 0.611 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.869 12.394 -2.013 35.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.042 4.042 4 H 0.106 0.894 5 C 0.052 3.948 6 H 0.093 0.907 7 N -0.361 5.361 8 C 0.299 3.701 9 O -0.464 6.464 10 C -0.163 4.163 11 C -0.119 4.119 12 C -0.180 4.180 13 C -0.182 4.182 14 C -0.162 4.162 15 C -0.164 4.164 16 C -0.087 4.087 17 N -0.235 5.235 18 C -0.085 4.085 19 C 0.240 3.760 20 O -0.492 6.492 21 N -0.236 5.236 22 C -0.456 4.456 23 H 0.070 0.930 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.787 3.213 27 H -0.181 1.181 28 H -0.201 1.201 29 H -0.152 1.152 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.138 0.862 51 H 0.225 0.775 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.883 11.553 -3.749 34.118 hybrid contribution 0.725 0.310 1.219 1.452 sum -31.158 11.863 -2.530 33.436 Atomic orbital electron populations 1.21670 0.93581 1.02337 1.02034 1.21471 0.96720 0.94502 1.02239 1.22942 0.86889 0.97405 0.96929 0.89351 1.21344 0.84230 0.92117 0.97120 0.90725 1.45988 1.24367 1.53607 1.12142 1.21385 0.85116 0.79876 0.83746 1.90712 1.74944 1.54743 1.26017 1.21757 0.93374 1.01315 0.99828 1.22293 0.96554 0.97839 0.95252 1.23027 0.96857 0.98224 0.99889 1.22842 0.95852 1.01261 0.98211 1.22943 0.96149 0.98880 0.98257 1.22646 0.95122 1.00602 0.98072 1.23062 0.99178 0.89236 0.97199 1.64861 1.08481 1.30155 1.20038 1.21998 0.91307 1.03800 0.91396 1.20942 0.89993 0.81540 0.83566 1.90551 1.72350 1.55988 1.30310 1.42015 1.09182 1.64635 1.07732 1.18976 0.85480 1.46198 0.94955 0.93024 1.26149 0.96120 0.96073 1.03260 1.69818 1.09495 1.47765 1.30720 0.85341 0.79258 0.80357 0.76384 1.18146 1.20145 1.15166 0.90699 0.92221 0.93597 0.91316 0.93374 0.74646 0.86069 0.86492 0.90856 0.89435 0.93813 0.90844 0.90545 0.90985 0.88203 0.92603 0.89493 0.92942 0.91985 0.89342 0.86169 0.77497 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.52 71.98 0.69 -1.32 16 2 C -0.11 -2.24 5.55 30.60 0.17 -2.07 16 3 C 0.07 1.34 2.01 45.06 0.09 1.43 16 4 H 0.09 1.21 7.60 -2.38 -0.02 1.19 16 5 C 0.16 3.35 2.18 45.89 0.10 3.45 16 6 H 0.07 2.04 7.23 -2.38 -0.02 2.02 16 7 N -0.71 -9.80 4.64 -438.29 -2.03 -11.84 16 8 C 0.51 8.83 7.83 87.65 0.69 9.52 16 9 O -0.58 -16.34 15.44 -3.03 -0.05 -16.38 16 10 C -0.12 -1.12 5.52 29.84 0.16 -0.95 16 11 C -0.10 -1.30 3.11 -10.27 -0.03 -1.33 16 12 C -0.14 -2.03 7.65 31.18 0.24 -1.79 16 13 C -0.14 -1.57 8.09 31.18 0.25 -1.31 16 14 C -0.13 -1.04 7.65 31.12 0.24 -0.80 16 15 C -0.13 -3.08 6.79 31.49 0.21 -2.86 16 16 C 0.04 1.18 6.09 86.43 0.53 1.71 16 17 N -0.51 -15.14 4.56 -860.99 -3.92 -19.06 16 18 C 0.05 1.38 5.31 85.56 0.45 1.83 16 19 C 0.45 20.48 7.69 87.66 0.67 21.16 16 20 O -0.61 -34.55 15.31 -3.06 -0.05 -34.60 16 21 N -0.59 -27.87 5.09 -306.99 -1.56 -29.44 16 22 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 23 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 24 C -0.02 -1.00 5.50 84.92 0.47 -0.53 16 25 N -0.94 -56.95 13.96 21.66 0.30 -56.65 16 26 Si 0.97 38.41 27.74 68.60 1.90 40.31 16 27 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 28 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 29 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.76 7.39 -2.39 -0.02 0.74 16 33 H 0.07 1.36 7.26 -2.39 -0.02 1.35 16 34 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 35 H 0.42 2.77 8.38 -92.71 -0.78 2.00 16 36 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.12 0.56 7.88 -2.39 -0.02 0.54 16 38 H 0.07 1.34 7.73 -2.38 -0.02 1.32 16 39 H 0.09 1.04 7.92 -2.38 -0.02 1.02 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 44 H 0.10 0.49 8.10 -2.38 -0.02 0.47 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.82 7.95 -2.39 -0.02 1.80 16 47 H 0.05 1.95 7.67 -2.39 -0.02 1.93 16 48 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 49 H 0.09 2.05 7.64 -2.39 -0.02 2.03 16 50 H 0.12 2.87 7.07 -2.39 -0.02 2.85 16 51 H 0.39 14.89 5.76 -92.70 -0.53 14.36 16 52 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -84.88 410.27 -0.08 -84.96 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.45 Total: 35.02 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.78 Total: 7.68 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -7.22 Total: -116.98 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.99 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -84.88 -0.08 -84.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707191964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.460 kcal (2) G-P(sol) polarization free energy of solvation -84.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds