Wall clock time and date at job start Tue Mar 31 2020 19:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50699 * 120.00021 * 2 1 4 4 C 1.32998 * 119.99843 * 180.02562 * 2 1 3 5 5 C 1.47103 * 119.99628 * 179.72204 * 4 2 1 6 6 O 1.21607 * 120.00254 * 0.27828 * 5 4 2 7 7 N 1.34780 * 119.99662 * 180.27244 * 5 4 2 8 8 C 1.46499 * 120.00012 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47228 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47175 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46898 * 185.24856 * 10 9 8 12 12 H 1.09003 * 110.33511 * 56.87389 * 11 10 9 13 13 C 1.54908 * 110.37126 * 179.24583 * 11 10 9 14 14 C 1.55140 * 101.65454 * 155.90180 * 13 11 10 15 15 C 1.54328 * 103.01683 * 324.34705 * 14 13 11 16 16 N 1.47445 * 107.23154 * 22.28411 * 15 14 13 17 17 C 1.46903 * 110.99856 * 123.25939 * 16 15 14 18 18 C 1.50701 * 109.46881 * 55.89781 * 17 16 15 19 19 O 1.21288 * 120.00339 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99417 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99568 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99914 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99758 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99633 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00100 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47231 * 89.99408 * 25 23 21 27 27 H 1.48495 * 109.47305 * 209.99493 * 25 23 21 28 28 H 1.48507 * 109.47200 * 329.99909 * 25 23 21 29 29 H 1.09000 * 109.46666 * 269.99831 * 1 2 3 30 30 H 1.08991 * 109.47200 * 29.99669 * 1 2 3 31 31 H 1.08997 * 109.47210 * 149.99993 * 1 2 3 32 32 H 1.09001 * 109.47159 * 240.00299 * 3 2 1 33 33 H 1.08996 * 109.47344 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47000 * 120.00556 * 3 2 1 35 35 H 1.07999 * 119.99858 * 359.97438 * 4 2 1 36 36 H 0.96995 * 119.99746 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.47373 * 300.00470 * 8 7 5 38 38 H 1.09001 * 109.47032 * 60.00281 * 8 7 5 39 39 H 1.09001 * 109.47197 * 300.00418 * 9 8 7 40 40 H 1.09001 * 109.47013 * 60.00111 * 9 8 7 41 41 H 1.08999 * 109.46701 * 305.25093 * 10 9 8 42 42 H 1.08994 * 109.46922 * 65.24793 * 10 9 8 43 43 H 1.08997 * 110.99091 * 273.99030 * 13 11 10 44 44 H 1.09006 * 110.99030 * 37.80982 * 13 11 10 45 45 H 1.09001 * 110.70593 * 205.97148 * 14 13 11 46 46 H 1.08997 * 110.71250 * 82.72552 * 14 13 11 47 47 H 1.09005 * 109.88594 * 262.87740 * 15 14 13 48 48 H 1.09001 * 109.88826 * 141.69340 * 15 14 13 49 49 H 1.08991 * 109.47049 * 175.89598 * 17 16 15 50 50 H 1.09002 * 109.46980 * 295.89933 * 17 16 15 51 51 H 0.96998 * 120.00046 * 359.97438 * 20 18 17 52 52 H 0.97002 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 3.6430 -1.1518 -0.0067 6 8 4.2511 -0.0986 -0.0062 7 7 4.3169 -2.3190 -0.0128 8 6 5.7818 -2.3190 -0.0195 9 6 6.2918 -3.7615 -0.0262 10 6 7.8219 -3.7615 -0.0325 11 6 8.3312 -5.1975 -0.1711 12 1 7.9270 -5.6574 -1.0730 13 6 9.8798 -5.2201 -0.1989 14 6 10.1811 -6.6618 0.2884 15 6 9.0694 -6.9167 1.3280 16 7 7.9633 -5.9914 1.0205 17 6 6.7099 -6.7247 0.7983 18 6 6.4098 -7.5823 2.0006 19 8 7.1658 -7.5830 2.9491 20 7 5.3016 -8.3492 2.0215 21 6 5.0288 -9.1298 3.1151 22 1 5.7015 -9.1298 3.9599 23 6 3.8861 -9.9201 3.1368 24 7 3.6249 -10.6687 4.1848 25 14 2.7221 -9.9196 1.6758 26 1 3.1329 -10.9749 0.7152 27 1 1.3390 -10.1883 2.1447 28 1 2.7692 -8.5950 1.0059 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 2.8872 1.3629 -0.8900 33 1 1.5523 2.1336 0.0005 34 1 2.8873 1.3628 0.8899 35 1 1.6320 -2.0871 -0.0005 36 1 3.8318 -3.1590 -0.0134 37 1 6.1412 -1.8029 -0.9098 38 1 6.1493 -1.8075 0.8702 39 1 5.9325 -4.2780 0.8639 40 1 5.9244 -4.2726 -0.9160 41 1 8.1816 -3.1657 -0.8714 42 1 8.1890 -3.3342 0.9005 43 1 10.2545 -5.0636 -1.2105 44 1 10.2935 -4.4814 0.4877 45 1 11.1646 -6.7131 0.7556 46 1 10.1074 -7.3708 -0.5362 47 1 9.4481 -6.7215 2.3313 48 1 8.7221 -7.9473 1.2544 49 1 5.8964 -6.0156 0.6456 50 1 6.8107 -7.3576 -0.0834 51 1 4.6972 -8.3489 1.2628 52 1 2.8274 -11.2207 4.1998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713426589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:22 Heat of formation + Delta-G solvation = -61.300193 kcal Electronic energy + Delta-G solvation = -29292.722932 eV Core-core repulsion = 25292.132638 eV Total energy + Delta-G solvation = -4000.590294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97542 -39.57669 -37.79467 -36.31806 -35.20205 -34.03469 -33.07141 -31.99866 -31.57105 -29.53126 -28.13333 -27.73743 -26.87339 -24.99311 -24.01740 -21.99358 -21.32226 -20.92046 -19.86436 -19.32806 -18.87720 -18.20179 -17.06091 -16.63401 -16.01665 -15.73068 -15.51530 -15.17782 -14.87789 -14.69340 -14.49738 -14.22041 -14.06278 -13.91114 -13.50679 -13.32540 -12.98341 -12.87402 -12.67343 -12.60431 -12.42934 -12.39272 -12.23419 -12.14624 -12.00942 -11.84886 -11.81964 -11.30656 -11.21056 -11.12108 -10.92524 -10.65955 -10.62286 -10.57832 -10.47519 -9.99549 -9.71227 -9.56892 -9.49896 -9.01482 -8.49556 -8.19562 -7.97925 -6.33029 -3.84369 1.16682 2.98589 3.03482 3.12090 3.13216 3.17901 3.72129 4.00129 4.07836 4.47233 4.55858 4.56687 4.57080 4.83632 4.91356 4.95371 4.98933 5.08542 5.15022 5.18186 5.20186 5.22387 5.35818 5.40330 5.49572 5.51738 5.53847 5.57762 5.61614 5.64162 5.70062 5.79178 5.81303 5.85853 5.87195 5.92262 5.97000 6.08105 6.20078 6.23027 6.25051 6.28871 6.33977 6.39185 6.58972 7.25000 7.29186 7.42982 7.57247 8.12538 8.15114 8.58189 8.93408 9.40443 9.81259 10.80223 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007052 B = 0.003131 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.766064 B = 8939.555103 C =12394.797642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.034 4.034 3 C -0.116 4.116 4 C -0.238 4.238 5 C 0.544 3.456 6 O -0.546 6.546 7 N -0.728 5.728 8 C 0.122 3.878 9 C -0.137 4.137 10 C -0.096 4.096 11 C 0.070 3.930 12 H 0.052 0.948 13 C -0.122 4.122 14 C -0.149 4.149 15 C 0.062 3.938 16 N -0.502 5.502 17 C 0.033 3.967 18 C 0.451 3.549 19 O -0.559 6.559 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.092 0.908 50 H 0.046 0.954 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 17.616 -14.946 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.036 4.036 3 C -0.172 4.172 4 C -0.259 4.259 5 C 0.334 3.666 6 O -0.427 6.427 7 N -0.379 5.379 8 C -0.002 4.002 9 C -0.174 4.174 10 C -0.135 4.135 11 C -0.039 4.039 12 H 0.070 0.930 13 C -0.160 4.160 14 C -0.187 4.187 15 C -0.066 4.066 16 N -0.227 5.227 17 C -0.099 4.099 18 C 0.236 3.764 19 O -0.441 6.441 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.064 0.936 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.581 18.513 -13.750 23.068 hybrid contribution -1.342 -1.396 -1.736 2.600 sum -0.761 17.118 -15.486 23.095 Atomic orbital electron populations 1.21032 0.91111 1.03247 1.03039 1.22587 0.95936 0.95494 0.89539 1.21046 0.99104 0.92701 1.04387 1.22403 0.93130 0.99039 1.11320 1.18556 0.88195 0.83542 0.76324 1.90764 1.70704 1.30867 1.50326 1.45951 1.07672 1.08674 1.75579 1.21374 0.79121 0.97561 1.02118 1.21962 0.96997 0.95313 1.03163 1.21407 0.93968 0.95579 1.02501 1.22641 0.94889 0.94398 0.91966 0.92977 1.22701 0.94729 0.97444 1.01140 1.22914 1.00097 0.96415 0.99300 1.22683 0.89404 0.95594 0.98881 1.63247 1.02096 1.23586 1.33742 1.22267 0.94290 0.96762 0.96584 1.19678 0.83566 0.83820 0.89316 1.90571 1.48687 1.67639 1.37172 1.42214 1.21937 1.40827 1.18178 1.19422 1.08491 1.18806 0.96505 0.86298 1.25035 0.97353 0.96590 0.97201 1.69622 1.27188 1.26910 1.28458 0.86685 0.81567 0.78506 0.82688 1.19699 1.20169 1.19523 0.90205 0.90987 0.91068 0.89954 0.93018 0.89921 0.85619 0.76436 0.91830 0.91424 0.89825 0.91798 0.91707 0.90643 0.91280 0.90534 0.90974 0.92018 0.89904 0.92366 0.89002 0.93643 0.79815 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.03 -0.30 6.11 -101.16 -0.62 -0.92 16 3 C -0.12 -1.09 8.33 36.01 0.30 -0.79 16 4 C -0.24 -2.30 9.63 -37.80 -0.36 -2.66 16 5 C 0.54 6.53 7.73 -12.66 -0.10 6.44 16 6 O -0.55 -8.05 13.07 5.27 0.07 -7.98 16 7 N -0.73 -7.59 5.55 -61.49 -0.34 -7.93 16 8 C 0.12 1.28 5.67 -4.05 -0.02 1.25 16 9 C -0.14 -1.37 4.14 -26.73 -0.11 -1.48 16 10 C -0.10 -0.97 4.94 -26.73 -0.13 -1.10 16 11 C 0.07 0.80 2.58 -66.19 -0.17 0.63 16 12 H 0.05 0.57 7.72 -51.93 -0.40 0.17 16 13 C -0.12 -1.27 6.49 -24.59 -0.16 -1.43 16 14 C -0.15 -1.76 6.94 -24.90 -0.17 -1.94 16 15 C 0.06 0.99 5.14 -2.83 -0.01 0.97 16 16 N -0.50 -7.70 4.60 -224.81 -1.03 -8.73 16 17 C 0.03 0.53 4.93 -4.97 -0.02 0.50 16 18 C 0.45 9.99 7.11 -10.98 -0.08 9.91 16 19 O -0.56 -14.59 14.00 5.55 0.08 -14.51 16 20 N -0.59 -13.80 5.09 -10.96 -0.06 -13.86 16 21 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 25 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.88 7.21 -51.93 -0.37 0.50 16 33 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 34 H 0.08 0.91 7.23 -51.93 -0.38 0.54 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.40 3.42 8.46 -40.82 -0.35 3.08 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.01 6.19 -51.93 -0.32 0.68 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.48 8.01 -51.93 -0.42 1.07 16 48 H 0.06 1.06 6.64 -51.93 -0.34 0.71 16 49 H 0.09 1.30 5.35 -51.93 -0.28 1.02 16 50 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 51 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 52 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 409.85 15.07 6.18 6.18 Total: -1.00 -33.61 409.85 -9.56 -43.18 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -8.96 Total: 12.78 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.56 Total: 1.38 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.66 Total: -55.31 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.15 Total: -22.50 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.61 -9.56 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713426589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.125 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds