Wall clock time and date at job start Tue Mar 31 2020 19:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 H 1.09000 * 110.82181 * 303.11865 * 3 2 1 5 5 C 1.54887 * 110.75563 * 66.45887 * 3 2 1 6 6 C 1.54266 * 104.19888 * 156.25362 * 5 3 2 7 7 C 1.53872 * 106.59640 * 336.38805 * 6 5 3 8 8 C 1.54266 * 106.60044 * 359.97438 * 7 6 5 9 9 H 1.09001 * 110.48592 * 264.92893 * 8 7 6 10 10 C 1.50699 * 110.48396 * 142.28562 * 8 7 6 11 11 O 1.21279 * 120.00133 * 241.44840 * 10 8 7 12 12 N 1.34777 * 119.99948 * 61.45748 * 10 8 7 13 13 C 1.46500 * 119.99792 * 179.97438 * 12 10 8 14 14 C 1.53010 * 109.47019 * 180.02562 * 13 12 10 15 15 C 1.53934 * 113.72972 * 271.72708 * 14 13 12 16 16 N 1.47959 * 86.18149 * 221.92038 * 15 14 13 17 17 C 1.46893 * 111.00194 * 137.58269 * 16 15 14 18 18 C 1.50698 * 109.47023 * 70.64243 * 17 16 15 19 19 O 1.21292 * 120.00232 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99921 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99780 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99983 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99492 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99606 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00535 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47020 * 89.99756 * 25 23 21 27 27 H 1.48495 * 109.47135 * 210.00129 * 25 23 21 28 28 H 1.48504 * 109.46753 * 330.00076 * 25 23 21 29 29 C 1.47961 * 90.75979 * 24.69017 * 16 15 14 30 30 H 1.09003 * 109.46982 * 59.99497 * 1 2 3 31 31 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46957 * 300.00293 * 1 2 3 33 33 H 1.09007 * 109.47088 * 240.00584 * 2 1 3 34 34 H 1.08990 * 109.47117 * 120.00715 * 2 1 3 35 35 H 1.09001 * 110.48816 * 37.57288 * 5 3 2 36 36 H 1.09004 * 110.48531 * 274.93503 * 5 3 2 37 37 H 1.09003 * 110.03179 * 95.67576 * 6 5 3 38 38 H 1.09003 * 110.02980 * 217.05505 * 6 5 3 39 39 H 1.09002 * 110.03208 * 119.28196 * 7 6 5 40 40 H 1.08996 * 110.03362 * 240.71095 * 7 6 5 41 41 H 0.96996 * 119.99926 * 359.97438 * 12 10 8 42 42 H 1.09001 * 109.46938 * 299.99310 * 13 12 10 43 43 H 1.08993 * 109.47568 * 59.99753 * 13 12 10 44 44 H 1.08992 * 112.93526 * 43.43176 * 14 13 12 45 45 H 1.09002 * 113.76331 * 336.23459 * 15 14 13 46 46 H 1.09000 * 113.75931 * 107.60623 * 15 14 13 47 47 H 1.08999 * 109.47251 * 190.64332 * 17 16 15 48 48 H 1.09002 * 109.47514 * 310.64009 * 17 16 15 49 49 H 0.97004 * 120.00021 * 359.97438 * 20 18 17 50 50 H 0.96994 * 119.99586 * 179.97438 * 24 23 21 51 51 H 1.09001 * 113.75968 * 220.99234 * 29 16 15 52 52 H 1.08999 * 113.86342 * 89.64661 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6443 1.9933 -0.8533 5 6 1.6776 2.1528 1.3278 6 6 2.7190 3.2846 1.4480 7 6 3.9340 2.8550 0.6073 8 6 3.5888 1.4769 0.0060 9 1 3.9864 0.6775 0.6314 10 6 4.1237 1.3653 -1.3984 11 8 3.3609 1.1971 -2.3262 12 7 5.4497 1.4521 -1.6234 13 6 5.9697 1.3431 -2.9887 14 6 7.4940 1.4739 -2.9658 15 6 7.9928 2.9264 -3.0705 16 7 9.0212 2.4021 -3.9960 17 6 9.1934 3.2932 -5.1511 18 6 9.8676 4.5658 -4.7076 19 8 10.1750 4.7156 -3.5439 20 7 10.1301 5.5372 -5.6044 21 6 10.7430 6.6952 -5.2008 22 1 11.0152 6.8292 -4.1643 23 6 11.0140 7.6964 -6.1255 24 7 11.6012 8.8067 -5.7386 25 14 10.5439 7.4643 -7.9184 26 1 9.1676 7.9762 -8.1394 27 1 11.4945 8.2119 -8.7801 28 1 10.5959 6.0202 -8.2607 29 6 8.1555 1.2520 -4.3379 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 1.7662 1.4622 2.1665 36 1 0.6699 2.5654 1.2771 37 1 2.3057 4.2151 1.0588 38 1 3.0117 3.4134 2.4900 39 1 4.1104 3.5770 -0.1901 40 1 4.8171 2.7749 1.2411 41 1 6.0597 1.5869 -0.8814 42 1 5.6948 0.3743 -3.4058 43 1 5.5457 2.1369 -3.6035 44 1 7.9569 0.9063 -2.1586 45 1 7.2803 3.6025 -3.5432 46 1 8.3998 3.3192 -2.1387 47 1 9.8087 2.7988 -5.9028 48 1 8.2180 3.5282 -5.5773 49 1 9.8853 5.4170 -6.5353 50 1 11.7907 9.5054 -6.3841 51 1 8.6924 0.3069 -4.4189 52 1 7.4900 1.4363 -5.1813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713918392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:04 Heat of formation + Delta-G solvation = -84.670634 kcal Electronic energy + Delta-G solvation = -29055.871022 eV Core-core repulsion = 25054.267309 eV Total energy + Delta-G solvation = -4001.603712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56423 -41.01751 -39.69867 -38.55245 -36.08211 -35.76470 -34.07540 -33.78792 -32.29574 -30.49945 -28.56763 -28.37117 -27.07426 -26.53722 -24.25405 -23.50008 -22.40565 -21.29958 -21.16775 -20.78196 -20.31978 -20.17019 -18.29695 -17.85013 -17.31478 -16.88583 -16.67396 -16.57427 -16.23376 -16.14303 -15.56387 -15.53025 -15.28682 -15.00863 -14.81542 -14.52381 -14.30700 -14.24778 -14.00597 -13.81508 -13.66837 -13.48496 -13.13441 -12.94287 -12.89245 -12.76068 -12.45406 -12.32737 -12.21362 -12.00417 -11.94681 -11.79389 -11.67152 -11.60250 -11.51884 -11.49560 -11.33367 -11.25229 -10.72960 -10.43619 -10.27117 -10.09024 -9.69690 -8.43613 -6.04420 1.28050 1.33003 1.42187 1.65434 1.92500 2.20351 2.20808 2.66262 3.11458 3.13821 3.40563 3.46650 3.62904 3.68147 3.76770 4.05173 4.12316 4.20867 4.25920 4.28714 4.34951 4.37977 4.42134 4.47740 4.49510 4.50222 4.59368 4.61740 4.67630 4.70503 4.73284 4.83146 4.86262 4.89189 4.97521 5.04411 5.13468 5.20944 5.24394 5.25275 5.30068 5.37869 5.40267 5.46993 5.48411 5.51432 5.58804 5.89132 6.01586 6.56048 6.57076 6.85510 7.26454 7.36760 7.93447 8.73974 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.001948 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.128732 B =14367.891893 C =14969.604199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.073 4.073 4 H 0.058 0.942 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.115 4.115 8 C -0.107 4.107 9 H 0.124 0.876 10 C 0.515 3.485 11 O -0.582 6.582 12 N -0.720 5.720 13 C 0.134 3.866 14 C -0.106 4.106 15 C 0.017 3.983 16 N -0.484 5.484 17 C 0.019 3.981 18 C 0.450 3.550 19 O -0.608 6.608 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.232 1.232 29 C 0.017 3.983 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.413 0.587 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.119 0.881 48 H 0.084 0.916 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.111 0.889 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 -21.042 9.235 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.092 4.092 4 H 0.076 0.924 5 C -0.151 4.151 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.128 4.128 9 H 0.142 0.858 10 C 0.303 3.697 11 O -0.462 6.462 12 N -0.372 5.372 13 C 0.010 3.990 14 C -0.125 4.125 15 C -0.112 4.112 16 N -0.207 5.207 17 C -0.113 4.113 18 C 0.238 3.762 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.155 1.155 29 C -0.112 4.112 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.250 0.750 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.137 0.863 48 H 0.102 0.898 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.130 0.870 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.367 -20.949 9.516 30.729 hybrid contribution -0.130 1.197 -1.204 1.703 sum -20.497 -19.752 8.312 29.654 Atomic orbital electron populations 1.21743 0.95321 1.01832 1.01750 1.21467 0.96483 0.95370 1.01609 1.21974 0.92132 0.96801 0.98248 0.92374 1.22430 0.98944 0.97212 0.96554 1.22129 0.94990 0.98483 1.00618 1.22137 0.99982 0.93912 0.99291 1.22326 0.97542 1.00967 0.91978 0.85805 1.21090 0.81962 0.74715 0.91916 1.90675 1.58049 1.50704 1.46768 1.46012 1.07463 1.73516 1.10166 1.21301 0.92097 1.01901 0.83700 1.23138 0.93455 0.95849 1.00022 1.23849 0.92636 0.96401 0.98331 1.68411 1.35881 1.06004 1.10368 1.22458 1.01355 0.91659 0.95826 1.20872 0.83393 0.86033 0.85943 1.90534 1.57162 1.81432 1.20104 1.42066 1.55525 1.15682 1.10172 1.18991 1.36711 0.93645 0.96363 0.92674 1.26116 0.96324 0.94227 1.04739 1.69803 1.42316 1.07618 1.37661 0.85375 0.79250 0.80611 0.76366 1.18221 1.19886 1.15524 1.24082 0.94370 0.96339 0.96378 0.93971 0.92306 0.91592 0.93713 0.90564 0.89854 0.91218 0.92393 0.90036 0.93094 0.89079 0.75015 0.90546 0.92870 0.86275 0.92240 0.91400 0.86313 0.89814 0.77565 0.91127 0.87050 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.76 71.98 0.70 -1.21 16 2 C -0.11 -1.60 5.43 30.59 0.17 -1.43 16 3 C -0.07 -1.12 1.93 -9.49 -0.02 -1.14 16 4 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 5 C -0.11 -1.26 5.47 31.67 0.17 -1.09 16 6 C -0.12 -1.44 6.80 31.32 0.21 -1.23 16 7 C -0.12 -1.49 6.30 31.32 0.20 -1.29 16 8 C -0.11 -1.52 2.70 -10.45 -0.03 -1.55 16 9 H 0.12 1.21 8.05 -2.39 -0.02 1.19 16 10 C 0.52 10.52 7.01 87.66 0.61 11.14 16 11 O -0.58 -16.76 15.56 -3.03 -0.05 -16.80 16 12 N -0.72 -12.07 5.49 -463.05 -2.54 -14.61 16 13 C 0.13 2.42 5.53 86.38 0.48 2.89 16 14 C -0.11 -1.91 3.94 -10.15 -0.04 -1.95 16 15 C 0.02 0.47 6.31 86.41 0.55 1.01 16 16 N -0.48 -14.06 5.95 -912.43 -5.43 -19.49 16 17 C 0.02 0.58 5.31 85.56 0.45 1.03 16 18 C 0.45 20.58 7.59 87.65 0.67 21.24 16 19 O -0.61 -33.88 15.13 -3.07 -0.05 -33.93 16 20 N -0.59 -28.32 5.09 -306.98 -1.56 -29.89 16 21 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 24 N -0.93 -56.60 13.96 21.66 0.30 -56.29 16 25 Si 0.96 39.13 27.74 68.60 1.90 41.03 16 26 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 29 C 0.02 0.31 7.54 86.40 0.65 0.96 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.69 7.41 -2.39 -0.02 0.67 16 33 H 0.04 0.83 7.94 -2.38 -0.02 0.81 16 34 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.08 0.69 8.01 -2.39 -0.02 0.67 16 36 H 0.07 0.76 8.02 -2.38 -0.02 0.74 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.86 7.83 -2.39 -0.02 0.84 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 5.07 8.45 -92.71 -0.78 4.29 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.15 7.84 -2.39 -0.02 1.13 16 44 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.72 7.53 -2.39 -0.02 1.70 16 46 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 47 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 48 H 0.08 2.14 7.69 -2.39 -0.02 2.12 16 49 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 50 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 52 H 0.09 1.36 7.75 -2.39 -0.02 1.35 16 Total: -1.00 -81.96 411.90 -1.79 -83.75 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.47 Total: 37.79 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.09 Total: 8.44 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -9.23 Total: -120.28 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.09 Total: -50.73 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -81.96 -1.79 -83.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.921 kcal (2) G-P(sol) polarization free energy of solvation -81.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds