Wall clock time and date at job start Tue Mar 31 2020 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47528 * 2 1 4 4 H 1.09003 * 110.01669 * 53.30930 * 3 2 1 5 5 C 1.54266 * 110.03259 * 291.87264 * 3 2 1 6 6 C 1.54893 * 104.19572 * 217.10015 * 5 3 2 7 7 C 1.54891 * 102.74729 * 37.94016 * 6 5 3 8 8 C 1.53871 * 110.03904 * 174.70129 * 3 2 1 9 9 H 1.08997 * 110.03617 * 238.62587 * 8 3 2 10 10 C 1.50700 * 110.02857 * 0.02562 * 8 3 2 11 11 O 1.21284 * 120.00073 * 86.41910 * 10 8 3 12 12 N 1.34779 * 120.00117 * 266.41878 * 10 8 3 13 13 C 1.46505 * 119.99772 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46762 * 180.02562 * 13 12 10 15 15 C 1.53509 * 114.16871 * 184.99944 * 14 13 12 16 16 N 1.47487 * 87.93105 * 220.32471 * 15 14 13 17 17 C 1.46904 * 110.99584 * 138.70476 * 16 15 14 18 18 C 1.50700 * 109.46823 * 170.00318 * 17 16 15 19 19 O 1.21291 * 119.99826 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00186 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00402 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00114 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00239 * 179.72405 * 21 20 18 24 24 N 1.31404 * 119.99751 * 0.27291 * 23 21 20 25 25 Si 1.86805 * 120.00121 * 180.27030 * 23 21 20 26 26 H 1.48505 * 109.46715 * 90.00110 * 25 23 21 27 27 H 1.48491 * 109.47282 * 209.99956 * 25 23 21 28 28 H 1.48497 * 109.47210 * 330.00407 * 25 23 21 29 29 C 1.47477 * 87.83261 * 27.01330 * 16 15 14 30 30 H 1.09003 * 109.47223 * 59.99971 * 1 2 3 31 31 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47454 * 300.00134 * 1 2 3 33 33 H 1.09008 * 109.47294 * 239.99724 * 2 1 3 34 34 H 1.09000 * 109.47279 * 120.00567 * 2 1 3 35 35 H 1.08993 * 110.48709 * 335.77619 * 5 3 2 36 36 H 1.08996 * 110.48875 * 98.42482 * 5 3 2 37 37 H 1.09000 * 110.75816 * 156.25368 * 6 5 3 38 38 H 1.08997 * 110.75946 * 279.44331 * 6 5 3 39 39 H 1.09001 * 110.48734 * 203.37698 * 7 6 5 40 40 H 1.09000 * 110.48618 * 80.73580 * 7 6 5 41 41 H 0.96994 * 120.00067 * 0.02562 * 12 10 8 42 42 H 1.08995 * 109.47387 * 59.99903 * 13 12 10 43 43 H 1.09002 * 109.46907 * 299.99589 * 13 12 10 44 44 H 1.09000 * 113.25645 * 317.95062 * 14 13 12 45 45 H 1.09005 * 113.47697 * 105.56614 * 15 14 13 46 46 H 1.08999 * 113.53488 * 335.10332 * 15 14 13 47 47 H 1.09000 * 109.47491 * 50.00294 * 17 16 15 48 48 H 1.09006 * 109.46964 * 289.99767 * 17 16 15 49 49 H 0.97008 * 119.99632 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99892 * 179.97438 * 24 23 21 51 51 H 1.08998 * 113.48036 * 87.75364 * 29 16 15 52 52 H 1.09008 * 113.47437 * 218.22272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5875 1.9982 0.8213 5 6 1.7071 2.1206 -1.3450 6 6 2.9369 3.0173 -1.6329 7 6 4.1180 2.1476 -1.1350 8 6 3.5728 1.4596 0.1335 9 1 3.8642 2.0235 1.0196 10 6 4.0990 0.0503 0.2224 11 8 4.3408 -0.5718 -0.7902 12 7 4.3009 -0.5189 1.4274 13 6 4.8130 -1.8888 1.5137 14 6 4.9491 -2.2906 2.9838 15 6 5.5926 -3.6670 3.2022 16 7 4.6068 -3.8984 4.2745 17 6 4.0922 -5.2736 4.2286 18 6 3.2837 -5.5490 5.4702 19 8 3.1498 -4.6849 6.3108 20 7 2.7093 -6.7554 5.6466 21 6 1.9734 -7.0058 6.7758 22 1 1.8542 -6.2364 7.5243 23 6 1.3765 -8.2478 6.9549 24 7 1.5219 -9.1840 6.0444 25 14 0.3675 -8.5865 8.4901 26 1 -1.0496 -8.2181 8.2421 27 1 0.4516 -10.0297 8.8293 28 1 0.8981 -7.7808 9.6190 29 6 3.7033 -2.9721 3.5671 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5877 1.3736 -2.1296 36 1 0.8060 2.7270 -1.2538 37 1 3.0277 3.2173 -2.7005 38 1 2.8758 3.9490 -1.0706 39 1 4.9762 2.7736 -0.8907 40 1 4.3878 1.4049 -1.8858 41 1 4.1072 -0.0216 2.2372 42 1 5.7882 -1.9434 1.0300 43 1 4.1212 -2.5674 1.0146 44 1 5.3632 -1.4999 3.6095 45 1 6.6204 -3.6138 3.5614 46 1 5.4772 -4.3411 2.3534 47 1 4.9270 -5.9725 4.1762 48 1 3.4601 -5.3958 3.3490 49 1 2.8161 -7.4464 4.9741 50 1 1.1056 -10.0511 6.1696 51 1 3.0830 -3.4599 2.8152 52 1 3.1298 -2.3297 4.2355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713918393.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:08 Heat of formation + Delta-G solvation = -57.587670 kcal Electronic energy + Delta-G solvation = -29286.390280 eV Core-core repulsion = 25285.960973 eV Total energy + Delta-G solvation = -4000.429307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86259 -40.13645 -37.92331 -37.60128 -34.95566 -33.87542 -33.41814 -31.45567 -31.01554 -29.69887 -27.91848 -27.21129 -25.89278 -24.88769 -23.26884 -22.76300 -21.68234 -20.91312 -20.13505 -19.35232 -18.97505 -17.86069 -17.09268 -16.65839 -16.24157 -16.03274 -15.45519 -15.33841 -15.18194 -14.81353 -14.64689 -14.54460 -14.30199 -13.80106 -13.61005 -13.54144 -13.37404 -13.05014 -12.69576 -12.54727 -12.37846 -12.21970 -11.89151 -11.63917 -11.57822 -11.48091 -11.37049 -11.36413 -11.17795 -11.07821 -10.95460 -10.86076 -10.78529 -10.69641 -10.50224 -10.38636 -10.20284 -9.87700 -9.48893 -9.24578 -8.79691 -8.19593 -7.94784 -6.40336 -3.81028 2.45225 2.94331 3.18328 3.26727 3.32820 3.91140 3.97841 4.09435 4.20323 4.21560 4.25998 4.35218 4.63151 4.72871 4.86318 4.89611 4.97202 5.02940 5.05460 5.07237 5.19724 5.20645 5.24596 5.31858 5.31955 5.38018 5.39372 5.48422 5.51157 5.53219 5.56768 5.66432 5.70225 5.70906 5.74493 5.77321 5.81163 5.87748 5.93643 5.99077 6.01937 6.08998 6.13113 6.28053 6.28297 6.53384 7.16966 7.29186 7.56292 8.03669 8.07471 8.63746 9.19887 9.56263 10.08771 10.77583 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.001971 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.980605 B =14203.039589 C =15181.915413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.076 4.076 4 H 0.080 0.920 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.090 0.910 10 C 0.525 3.475 11 O -0.541 6.541 12 N -0.729 5.729 13 C 0.131 3.869 14 C -0.131 4.131 15 C 0.004 3.996 16 N -0.440 5.440 17 C 0.008 3.992 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.010 3.990 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.402 0.598 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.068 0.932 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 21.531 -16.222 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.133 4.133 9 H 0.108 0.892 10 C 0.312 3.688 11 O -0.418 6.418 12 N -0.381 5.381 13 C 0.007 3.993 14 C -0.150 4.150 15 C -0.125 4.125 16 N -0.161 5.161 17 C -0.124 4.124 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.267 21.502 -15.640 26.929 hybrid contribution -0.804 -0.909 0.036 1.214 sum 3.464 20.593 -15.604 26.069 Atomic orbital electron populations 1.21754 0.95426 1.01874 1.01674 1.21856 0.96481 0.95621 1.02926 1.21730 0.92016 0.96974 0.98792 0.90166 1.22451 0.97858 0.98569 0.96647 1.22483 0.94602 0.97979 1.01083 1.22365 0.97716 0.98822 0.96185 1.22059 0.96958 0.93290 1.01018 0.89214 1.20451 0.76548 0.88643 0.83161 1.90685 1.51415 1.64585 1.35136 1.46128 1.67387 1.16072 1.08493 1.21356 0.99625 0.82664 0.95698 1.23013 0.98956 0.98059 0.94979 1.23836 0.99192 0.94807 0.94715 1.68820 1.06956 1.05006 1.35341 1.22515 0.99590 0.92231 0.98057 1.19665 0.84667 0.83891 0.88603 1.90518 1.64202 1.45743 1.45437 1.41877 1.45741 1.11793 1.21046 1.19690 1.25955 0.98747 0.98345 0.87980 1.25259 0.98402 0.95388 0.98999 1.69609 1.45088 1.05025 1.34723 0.85859 0.79689 0.77439 0.81312 1.20448 1.20932 1.19423 1.23950 0.95106 0.96119 0.96717 0.92703 0.92639 0.92734 0.91018 0.91587 0.91148 0.91479 0.91328 0.91467 0.91481 0.89591 0.76381 0.91144 0.91319 0.87371 0.89403 0.91192 0.89359 0.92269 0.77557 0.91914 0.91376 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.77 37.15 0.36 -0.85 16 2 C -0.13 -1.16 4.12 -26.74 -0.11 -1.27 16 3 C -0.08 -0.55 2.92 -89.51 -0.26 -0.81 16 4 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.12 -0.79 5.55 -25.07 -0.14 -0.93 16 6 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 7 C -0.11 -0.84 6.31 -25.07 -0.16 -1.00 16 8 C -0.11 -0.83 3.29 -90.66 -0.30 -1.13 16 9 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.53 5.24 4.68 -10.98 -0.05 5.19 16 11 O -0.54 -7.41 15.03 5.55 0.08 -7.33 16 12 N -0.73 -6.21 4.99 -60.29 -0.30 -6.51 16 13 C 0.13 1.24 5.59 -4.04 -0.02 1.22 16 14 C -0.13 -1.32 4.09 -90.09 -0.37 -1.69 16 15 C 0.00 0.05 7.26 -7.55 -0.05 0.00 16 16 N -0.44 -7.15 5.82 -246.09 -1.43 -8.58 16 17 C 0.01 0.15 5.30 -4.97 -0.03 0.12 16 18 C 0.45 10.77 7.85 -10.99 -0.09 10.68 16 19 O -0.58 -16.04 16.01 5.55 0.09 -15.96 16 20 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C 0.01 0.14 7.28 -7.55 -0.05 0.08 16 30 H 0.05 0.40 7.52 -51.93 -0.39 0.01 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.78 7.12 -51.92 -0.37 0.41 16 34 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16 35 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.83 6.88 -51.93 -0.36 0.47 16 41 H 0.40 2.61 8.47 -40.82 -0.35 2.26 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 44 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.73 7.87 -51.93 -0.41 0.33 16 47 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 48 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 49 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 51 H 0.07 0.90 7.15 -51.93 -0.37 0.53 16 52 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -33.86 410.99 -10.52 -44.38 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -9.11 Total: 9.71 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.68 Total: 0.59 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.07 Total: -53.80 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.86 -10.52 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918393.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.210 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds