Wall clock time and date at job start Tue Mar 31 2020 19:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47528 * 2 1 4 4 H 1.09003 * 110.01669 * 53.30930 * 3 2 1 5 5 C 1.54266 * 110.03259 * 291.87264 * 3 2 1 6 6 C 1.54893 * 104.19572 * 217.10015 * 5 3 2 7 7 C 1.54891 * 102.74729 * 37.94016 * 6 5 3 8 8 C 1.53871 * 110.03904 * 174.70129 * 3 2 1 9 9 H 1.08997 * 110.03617 * 238.62587 * 8 3 2 10 10 C 1.50700 * 110.02857 * 0.02562 * 8 3 2 11 11 O 1.21284 * 120.00073 * 86.41910 * 10 8 3 12 12 N 1.34779 * 120.00117 * 266.41878 * 10 8 3 13 13 C 1.46505 * 119.99772 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46762 * 180.02562 * 13 12 10 15 15 C 1.53509 * 114.16871 * 184.99944 * 14 13 12 16 16 N 1.47487 * 87.93105 * 220.32471 * 15 14 13 17 17 C 1.46904 * 110.99584 * 138.70476 * 16 15 14 18 18 C 1.50700 * 109.46823 * 170.00318 * 17 16 15 19 19 O 1.21291 * 119.99826 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00186 * 179.97438 * 18 17 16 21 21 C 1.37089 * 120.00402 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00114 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00239 * 179.72405 * 21 20 18 24 24 N 1.31404 * 119.99751 * 0.27291 * 23 21 20 25 25 Si 1.86805 * 120.00121 * 180.27030 * 23 21 20 26 26 H 1.48505 * 109.46715 * 90.00110 * 25 23 21 27 27 H 1.48491 * 109.47282 * 209.99956 * 25 23 21 28 28 H 1.48497 * 109.47210 * 330.00407 * 25 23 21 29 29 C 1.47477 * 87.83261 * 27.01330 * 16 15 14 30 30 H 1.09003 * 109.47223 * 59.99971 * 1 2 3 31 31 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47454 * 300.00134 * 1 2 3 33 33 H 1.09008 * 109.47294 * 239.99724 * 2 1 3 34 34 H 1.09000 * 109.47279 * 120.00567 * 2 1 3 35 35 H 1.08993 * 110.48709 * 335.77619 * 5 3 2 36 36 H 1.08996 * 110.48875 * 98.42482 * 5 3 2 37 37 H 1.09000 * 110.75816 * 156.25368 * 6 5 3 38 38 H 1.08997 * 110.75946 * 279.44331 * 6 5 3 39 39 H 1.09001 * 110.48734 * 203.37698 * 7 6 5 40 40 H 1.09000 * 110.48618 * 80.73580 * 7 6 5 41 41 H 0.96994 * 120.00067 * 0.02562 * 12 10 8 42 42 H 1.08995 * 109.47387 * 59.99903 * 13 12 10 43 43 H 1.09002 * 109.46907 * 299.99589 * 13 12 10 44 44 H 1.09000 * 113.25645 * 317.95062 * 14 13 12 45 45 H 1.09005 * 113.47697 * 105.56614 * 15 14 13 46 46 H 1.08999 * 113.53488 * 335.10332 * 15 14 13 47 47 H 1.09000 * 109.47491 * 50.00294 * 17 16 15 48 48 H 1.09006 * 109.46964 * 289.99767 * 17 16 15 49 49 H 0.97008 * 119.99632 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99892 * 179.97438 * 24 23 21 51 51 H 1.08998 * 113.48036 * 87.75364 * 29 16 15 52 52 H 1.09008 * 113.47437 * 218.22272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5875 1.9982 0.8213 5 6 1.7071 2.1206 -1.3450 6 6 2.9369 3.0173 -1.6329 7 6 4.1180 2.1476 -1.1350 8 6 3.5728 1.4596 0.1335 9 1 3.8642 2.0235 1.0196 10 6 4.0990 0.0503 0.2224 11 8 4.3408 -0.5718 -0.7902 12 7 4.3009 -0.5189 1.4274 13 6 4.8130 -1.8888 1.5137 14 6 4.9491 -2.2906 2.9838 15 6 5.5926 -3.6670 3.2022 16 7 4.6068 -3.8984 4.2745 17 6 4.0922 -5.2736 4.2286 18 6 3.2837 -5.5490 5.4702 19 8 3.1498 -4.6849 6.3108 20 7 2.7093 -6.7554 5.6466 21 6 1.9734 -7.0058 6.7758 22 1 1.8542 -6.2364 7.5243 23 6 1.3765 -8.2478 6.9549 24 7 1.5219 -9.1840 6.0444 25 14 0.3675 -8.5865 8.4901 26 1 -1.0496 -8.2181 8.2421 27 1 0.4516 -10.0297 8.8293 28 1 0.8981 -7.7808 9.6190 29 6 3.7033 -2.9721 3.5671 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5877 1.3736 -2.1296 36 1 0.8060 2.7270 -1.2538 37 1 3.0277 3.2173 -2.7005 38 1 2.8758 3.9490 -1.0706 39 1 4.9762 2.7736 -0.8907 40 1 4.3878 1.4049 -1.8858 41 1 4.1072 -0.0216 2.2372 42 1 5.7882 -1.9434 1.0300 43 1 4.1212 -2.5674 1.0146 44 1 5.3632 -1.4999 3.6095 45 1 6.6204 -3.6138 3.5614 46 1 5.4772 -4.3411 2.3534 47 1 4.9270 -5.9725 4.1762 48 1 3.4601 -5.3958 3.3490 49 1 2.8161 -7.4464 4.9741 50 1 1.1056 -10.0511 6.1696 51 1 3.0830 -3.4599 2.8152 52 1 3.1298 -2.3297 4.2355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713918393.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:07 Heat of formation + Delta-G solvation = -82.316781 kcal Electronic energy + Delta-G solvation = -29287.462614 eV Core-core repulsion = 25285.960973 eV Total energy + Delta-G solvation = -4001.501642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71002 -41.16434 -39.65542 -38.42580 -36.02787 -35.74865 -34.05563 -33.33053 -32.30800 -30.48637 -28.57026 -28.34702 -26.92962 -26.63389 -24.24313 -23.68511 -22.44727 -21.47730 -21.06195 -20.99882 -19.99886 -19.78601 -17.88898 -17.75160 -17.44223 -16.92730 -16.64734 -16.47371 -16.37075 -16.18253 -15.74250 -15.59601 -15.32967 -15.18990 -14.80633 -14.45430 -14.35452 -14.15500 -13.76719 -13.64102 -13.53150 -13.33947 -13.00646 -12.98280 -12.71350 -12.50448 -12.44142 -12.34048 -12.21641 -12.13829 -11.92297 -11.87389 -11.78043 -11.54803 -11.50803 -11.46824 -11.45168 -11.34514 -10.68813 -10.39866 -10.04486 -10.02713 -9.73365 -8.47901 -5.96837 1.36740 1.40175 1.53317 1.68436 2.04106 2.20880 2.28046 2.82185 3.17832 3.28977 3.44180 3.52006 3.64162 3.70107 3.74552 4.06354 4.14619 4.19158 4.21499 4.24646 4.34056 4.40077 4.41385 4.45568 4.50032 4.54918 4.60986 4.62431 4.67070 4.71704 4.77591 4.79302 4.80233 4.86385 4.89004 5.05200 5.12508 5.17547 5.20636 5.23596 5.26849 5.36174 5.36508 5.39670 5.42891 5.50361 5.55701 5.89456 6.08097 6.59144 6.59810 7.11657 7.30224 7.54978 8.11369 8.69577 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.001971 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.980605 B =14203.039589 C =15181.915413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.074 4.074 4 H 0.099 0.901 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.110 4.110 9 H 0.117 0.883 10 C 0.523 3.477 11 O -0.583 6.583 12 N -0.721 5.721 13 C 0.138 3.862 14 C -0.101 4.101 15 C 0.008 3.992 16 N -0.476 5.476 17 C 0.021 3.979 18 C 0.442 3.558 19 O -0.619 6.619 20 N -0.576 5.576 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.004 3.996 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.414 0.586 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.070 0.930 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 22.885 -16.292 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.092 4.092 4 H 0.117 0.883 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.131 4.131 9 H 0.135 0.865 10 C 0.311 3.689 11 O -0.463 6.463 12 N -0.373 5.373 13 C 0.014 3.986 14 C -0.120 4.120 15 C -0.121 4.121 16 N -0.198 5.198 17 C -0.110 4.110 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.214 5.214 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.118 0.882 46 H 0.103 0.897 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.439 22.857 -15.717 28.092 hybrid contribution -0.834 -1.325 0.031 1.566 sum 3.605 21.532 -15.686 26.883 Atomic orbital electron populations 1.21742 0.94829 1.01461 1.02503 1.21784 0.96995 0.96640 1.01122 1.21764 0.91839 0.95859 0.99777 0.88254 1.22452 0.98877 0.98440 0.95824 1.22480 0.93397 0.98197 1.01519 1.22354 0.98856 0.98528 0.95520 1.22147 0.96978 0.91764 1.02204 0.86472 1.20928 0.75773 0.89467 0.82708 1.90669 1.53290 1.65792 1.36596 1.46066 1.66674 1.15723 1.08794 1.21198 0.99491 0.82992 0.94929 1.22807 0.96286 0.97741 0.95154 1.23927 0.98769 0.95583 0.93788 1.68780 1.08855 1.04056 1.38086 1.22386 0.99517 0.94113 0.95015 1.20791 0.83802 0.82582 0.89915 1.90478 1.65564 1.46835 1.47560 1.41963 1.46085 1.12669 1.20693 1.19651 1.28221 0.99081 0.99338 0.90437 1.26063 0.98817 0.94654 1.01895 1.69671 1.45266 1.05341 1.35916 0.84918 0.78217 0.77711 0.77429 1.19571 1.19459 1.19787 1.24001 0.96090 0.95968 0.96397 0.91938 0.93729 0.91765 0.93707 0.92474 0.92860 0.90056 0.91150 0.89665 0.90184 0.92394 0.74951 0.90815 0.92567 0.86114 0.88171 0.89669 0.87445 0.90284 0.77071 0.91300 0.91179 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.77 71.98 0.70 -1.60 16 2 C -0.13 -2.23 4.12 30.59 0.13 -2.11 16 3 C -0.07 -0.94 2.92 -10.07 -0.03 -0.97 16 4 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 5 C -0.12 -1.42 5.55 31.67 0.18 -1.25 16 6 C -0.12 -1.23 6.91 31.89 0.22 -1.01 16 7 C -0.11 -1.57 6.31 31.67 0.20 -1.37 16 8 C -0.11 -1.45 3.29 -10.82 -0.04 -1.48 16 9 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 10 C 0.52 10.07 4.68 87.66 0.41 10.49 16 11 O -0.58 -16.26 15.03 -3.04 -0.05 -16.31 16 12 N -0.72 -11.28 4.99 -463.04 -2.31 -13.59 16 13 C 0.14 2.44 5.59 86.38 0.48 2.92 16 14 C -0.10 -1.85 4.09 -10.45 -0.04 -1.90 16 15 C 0.01 0.17 7.26 83.57 0.61 0.78 16 16 N -0.48 -14.99 5.82 -932.48 -5.43 -20.42 16 17 C 0.02 0.75 5.30 85.56 0.45 1.20 16 18 C 0.44 21.65 7.85 87.66 0.69 22.34 16 19 O -0.62 -35.45 16.01 -3.06 -0.05 -35.50 16 20 N -0.58 -30.27 5.29 -306.99 -1.62 -31.89 16 21 C -0.33 -19.29 9.68 84.04 0.81 -18.47 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 25 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 29 C 0.00 0.12 7.28 83.57 0.61 0.73 16 30 H 0.06 0.86 7.52 -2.39 -0.02 0.84 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 1.02 7.12 -2.38 -0.02 1.01 16 34 H 0.06 1.07 6.79 -2.39 -0.02 1.06 16 35 H 0.05 0.82 7.75 -2.39 -0.02 0.80 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.14 6.88 -2.39 -0.02 1.12 16 41 H 0.41 4.50 8.47 -92.71 -0.79 3.71 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.17 7.81 -2.39 -0.02 1.15 16 44 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 47 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 48 H 0.08 2.44 7.30 -2.38 -0.02 2.42 16 49 H 0.40 19.67 7.90 -92.70 -0.73 18.94 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.07 1.81 7.15 -2.39 -0.02 1.79 16 52 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -75.50 410.99 -1.90 -77.40 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.60 Total: 36.90 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.85 Total: 7.97 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -9.08 Total: -115.91 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.09 Total: -51.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.50 -1.90 -77.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918393.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.919 kcal (2) G-P(sol) polarization free energy of solvation -75.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds