Wall clock time and date at job start Tue Mar 31 2020 19:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 H 1.08998 * 110.05732 * 306.71623 * 3 2 1 5 5 C 1.54270 * 110.03074 * 68.13297 * 3 2 1 6 6 C 1.54889 * 104.19281 * 142.89724 * 5 3 2 7 7 C 1.54886 * 102.74833 * 322.05267 * 6 5 3 8 8 C 1.53870 * 110.03203 * 185.29892 * 3 2 1 9 9 H 1.09001 * 110.03443 * 121.43273 * 8 3 2 10 10 C 1.50695 * 110.03306 * 359.97438 * 8 3 2 11 11 O 1.21279 * 120.00228 * 273.58040 * 10 8 3 12 12 N 1.34779 * 119.99697 * 93.58018 * 10 8 3 13 13 C 1.46504 * 119.99813 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47290 * 180.02562 * 13 12 10 15 15 C 1.53937 * 113.72952 * 271.72520 * 14 13 12 16 16 N 1.47960 * 86.17970 * 221.91997 * 15 14 13 17 17 C 1.46892 * 111.00140 * 137.58497 * 16 15 14 18 18 C 1.50703 * 109.47277 * 90.64090 * 17 16 15 19 19 O 1.21292 * 119.99694 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00084 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99919 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00549 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99799 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99856 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00148 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47044 * 89.99630 * 25 23 21 27 27 H 1.48500 * 109.47166 * 209.99599 * 25 23 21 28 28 H 1.48501 * 109.47150 * 330.00135 * 25 23 21 29 29 C 1.47958 * 90.76401 * 24.68997 * 16 15 14 30 30 H 1.09000 * 109.46638 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47109 * 299.99291 * 1 2 3 32 32 H 1.08994 * 109.47252 * 59.99854 * 1 2 3 33 33 H 1.08997 * 109.47109 * 240.00709 * 2 1 3 34 34 H 1.08994 * 109.47252 * 120.00146 * 2 1 3 35 35 H 1.09007 * 110.48379 * 261.57306 * 5 3 2 36 36 H 1.08994 * 110.48608 * 24.21294 * 5 3 2 37 37 H 1.09003 * 110.74944 * 203.73952 * 6 5 3 38 38 H 1.08999 * 110.91695 * 80.45001 * 6 5 3 39 39 H 1.08995 * 110.48884 * 279.27018 * 7 6 5 40 40 H 1.09001 * 110.59875 * 156.67646 * 7 6 5 41 41 H 0.96993 * 120.00618 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.47055 * 299.99784 * 13 12 10 43 43 H 1.08995 * 109.47326 * 59.99635 * 13 12 10 44 44 H 1.09000 * 112.94021 * 43.42954 * 14 13 12 45 45 H 1.08991 * 113.76093 * 336.23777 * 15 14 13 46 46 H 1.08999 * 113.75478 * 107.60165 * 15 14 13 47 47 H 1.08996 * 109.47239 * 210.64127 * 17 16 15 48 48 H 1.09002 * 109.46951 * 330.64073 * 17 16 15 49 49 H 0.97002 * 120.00268 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99613 * 180.02562 * 24 23 21 51 51 H 1.09004 * 113.76349 * 220.99586 * 29 16 15 52 52 H 1.09000 * 113.86258 * 89.63913 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5874 1.9990 -0.8207 5 6 1.7071 2.1207 1.3451 6 6 2.9368 3.0173 1.6329 7 6 4.1179 2.1478 1.1351 8 6 3.5728 1.4598 -0.1335 9 1 3.8642 2.0246 -1.0191 10 6 4.0991 0.0505 -0.2225 11 8 4.3409 -0.5716 0.7902 12 7 4.3010 -0.5186 -1.4274 13 6 4.8121 -1.8889 -1.5139 14 6 4.9496 -2.2901 -2.9839 15 6 3.6714 -2.9073 -3.5798 16 7 4.5677 -3.8858 -4.2342 17 6 4.0121 -5.2433 -4.1555 18 6 3.1588 -5.5081 -5.3691 19 8 3.0261 -4.6500 -6.2160 20 7 2.5422 -6.6978 -5.5129 21 6 1.7655 -6.9384 -6.6167 22 1 1.6473 -6.1745 -7.3708 23 6 1.1302 -8.1653 -6.7651 24 7 0.3853 -8.3958 -7.8229 25 14 1.3340 -9.4865 -5.4605 26 1 0.2689 -9.3392 -4.4362 27 1 1.2311 -10.8264 -6.0925 28 1 2.6640 -9.3443 -4.8154 29 6 5.5952 -3.6721 -3.1912 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.8058 2.7270 1.2539 36 1 1.5876 1.3736 2.1297 37 1 3.0275 3.2174 2.7006 38 1 2.8791 3.9492 1.0704 39 1 4.3878 1.4050 1.8858 40 1 4.9775 2.7720 0.8910 41 1 4.1079 -0.0210 -2.2373 42 1 5.7871 -1.9442 -1.0299 43 1 4.1198 -2.5670 -1.0150 44 1 5.3876 -1.5045 -3.5996 45 1 3.0085 -3.3483 -2.8355 46 1 3.1519 -2.2517 -4.2787 47 1 4.8260 -5.9674 -4.1187 48 1 3.4032 -5.3351 -3.2561 49 1 2.6480 -7.3840 -4.8354 50 1 -0.0584 -9.2521 -7.9263 51 1 6.6127 -3.6276 -3.5796 52 1 5.4966 -4.3361 -2.3325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713918394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:10 Heat of formation + Delta-G solvation = -79.584192 kcal Electronic energy + Delta-G solvation = -29408.755142 eV Core-core repulsion = 25407.371995 eV Total energy + Delta-G solvation = -4001.383148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.65039 -41.09469 -39.73655 -38.41999 -36.04970 -35.73956 -34.05791 -33.77276 -32.32220 -30.49866 -28.59053 -28.37345 -27.09371 -26.52668 -24.12021 -23.64403 -22.43837 -21.47956 -21.26967 -20.94824 -20.30084 -19.81201 -17.87003 -17.77074 -17.46043 -16.94117 -16.83644 -16.48795 -16.32610 -16.15434 -15.75555 -15.44959 -15.33245 -15.00308 -14.83852 -14.52006 -14.38012 -14.26261 -14.14527 -13.73475 -13.67373 -13.34509 -13.04186 -13.00185 -12.70637 -12.50443 -12.43884 -12.30218 -12.21726 -12.00360 -11.88542 -11.85107 -11.77010 -11.66717 -11.51814 -11.48256 -11.46004 -11.35043 -10.68904 -10.46273 -10.25655 -10.04327 -9.64680 -8.42499 -6.03206 1.28385 1.33677 1.42703 1.68223 1.95423 2.21315 2.21920 2.63415 3.13109 3.20300 3.40413 3.51903 3.63844 3.67111 3.73226 4.05625 4.09826 4.19900 4.21350 4.24621 4.33156 4.39814 4.39910 4.41144 4.49061 4.54487 4.60646 4.62079 4.66662 4.72345 4.77216 4.79065 4.83165 4.88328 4.88971 5.04913 5.12170 5.17328 5.22499 5.23938 5.26388 5.36033 5.40842 5.42813 5.50467 5.52662 5.55410 5.90394 6.03377 6.58674 6.59441 6.87555 7.29820 7.39054 7.97028 8.75265 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002090 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.034413 B =13395.076941 C =14226.662816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.074 4.074 4 H 0.098 0.902 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.110 4.110 9 H 0.116 0.884 10 C 0.524 3.476 11 O -0.583 6.583 12 N -0.722 5.722 13 C 0.136 3.864 14 C -0.103 4.103 15 C 0.009 3.991 16 N -0.488 5.488 17 C 0.019 3.981 18 C 0.452 3.548 19 O -0.609 6.609 20 N -0.594 5.594 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.232 1.232 29 C 0.015 3.985 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.413 0.587 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.117 0.883 48 H 0.088 0.912 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.104 0.896 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.342 20.376 22.910 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.093 4.093 4 H 0.116 0.884 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.131 4.131 9 H 0.134 0.866 10 C 0.312 3.688 11 O -0.463 6.463 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.122 4.122 15 C -0.120 4.120 16 N -0.210 5.210 17 C -0.113 4.113 18 C 0.240 3.760 19 O -0.493 6.493 20 N -0.237 5.237 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.155 1.155 29 C -0.113 4.113 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.250 0.750 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.135 0.865 48 H 0.106 0.894 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.122 0.878 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.471 20.410 22.214 31.333 hybrid contribution -0.740 -1.356 0.302 1.574 sum 7.732 19.054 22.516 30.492 Atomic orbital electron populations 1.21745 0.94878 1.01487 1.02462 1.21779 0.96944 0.96595 1.01154 1.21765 0.91860 0.95908 0.99746 0.88371 1.22450 0.98841 0.98439 0.95839 1.22478 0.93423 0.98189 1.01521 1.22352 0.98813 0.98546 0.95526 1.22145 0.96966 0.91866 1.02172 0.86575 1.20896 0.75770 0.89420 0.82735 1.90665 1.53284 1.65766 1.36567 1.46082 1.66711 1.15796 1.08748 1.21274 0.99482 0.82917 0.95181 1.23065 0.96007 0.98241 0.94934 1.24086 0.95729 0.95450 0.96722 1.68331 1.08450 1.03160 1.41081 1.22458 0.99157 0.94893 0.94743 1.20937 0.83240 0.82127 0.89728 1.90531 1.65822 1.46610 1.46339 1.42076 1.45374 1.14764 1.21460 1.18992 1.25498 1.01028 1.00159 0.92781 1.26124 0.95403 1.00037 0.99945 1.69806 1.32006 1.25712 1.29999 0.85366 0.80709 0.77321 0.78134 1.18180 1.19917 1.15528 1.24067 0.98037 0.95195 0.94016 0.93661 0.91947 0.91871 0.92446 0.93602 0.90118 0.92784 0.91128 0.89733 0.92351 0.90228 0.75021 0.90878 0.92448 0.86601 0.90901 0.91071 0.86514 0.89447 0.77587 0.91151 0.87775 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.77 71.98 0.70 -1.56 16 2 C -0.13 -2.16 4.12 30.60 0.13 -2.03 16 3 C -0.07 -0.92 2.93 -10.07 -0.03 -0.95 16 4 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.12 -1.39 5.55 31.67 0.18 -1.21 16 6 C -0.12 -1.21 6.91 31.88 0.22 -0.99 16 7 C -0.11 -1.53 6.31 31.67 0.20 -1.33 16 8 C -0.11 -1.42 3.29 -10.82 -0.04 -1.45 16 9 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 10 C 0.52 9.73 4.68 87.66 0.41 10.14 16 11 O -0.58 -15.72 15.03 -3.03 -0.05 -15.76 16 12 N -0.72 -10.74 4.99 -463.06 -2.31 -13.05 16 13 C 0.14 2.21 5.53 86.38 0.48 2.68 16 14 C -0.10 -1.74 3.94 -10.15 -0.04 -1.78 16 15 C 0.01 0.22 7.51 86.41 0.65 0.87 16 16 N -0.49 -14.14 5.65 -912.41 -5.15 -19.29 16 17 C 0.02 0.59 5.28 85.56 0.45 1.04 16 18 C 0.45 20.90 7.83 87.66 0.69 21.58 16 19 O -0.61 -34.73 16.01 -3.07 -0.05 -34.78 16 20 N -0.59 -28.58 5.09 -306.98 -1.56 -30.14 16 21 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 24 N -0.93 -56.88 13.96 21.66 0.30 -56.58 16 25 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 29 C 0.02 0.28 7.51 86.41 0.65 0.93 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.85 7.52 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.05 6.79 -2.39 -0.02 1.03 16 34 H 0.05 1.01 7.12 -2.39 -0.02 1.00 16 35 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 1.12 6.88 -2.39 -0.02 1.10 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.41 4.31 8.47 -92.71 -0.79 3.52 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.09 7.84 -2.39 -0.02 1.08 16 44 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.73 7.22 -2.39 -0.02 1.71 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.12 2.98 8.08 -2.39 -0.02 2.96 16 48 H 0.09 2.22 7.38 -2.39 -0.02 2.20 16 49 H 0.39 15.45 5.76 -92.71 -0.53 14.92 16 50 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 51 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 52 H 0.09 1.35 7.88 -2.39 -0.02 1.33 16 Total: -1.00 -83.26 408.12 -1.41 -84.68 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.46 Total: 36.96 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.96 Total: 6.84 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.73 Total: -119.06 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.09 Total: -50.54 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -83.26 -1.41 -84.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.091 kcal (2) G-P(sol) polarization free energy of solvation -83.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds