Wall clock time and date at job start Tue Mar 31 2020 19:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47131 * 2 1 4 4 H 1.09001 * 110.54109 * 52.38416 * 3 2 1 5 5 C 1.54266 * 110.48488 * 289.77306 * 3 2 1 6 6 C 1.53879 * 106.59594 * 217.71083 * 5 3 2 7 7 C 1.54465 * 106.68754 * 0.15832 * 6 5 3 8 8 C 1.54888 * 104.10073 * 23.34204 * 7 6 5 9 9 H 1.08999 * 110.75581 * 80.70732 * 8 7 6 10 10 C 1.50699 * 110.75611 * 203.89628 * 8 7 6 11 11 O 1.21283 * 120.00134 * 116.06419 * 10 8 7 12 12 N 1.34778 * 119.99924 * 296.06394 * 10 8 7 13 13 C 1.46493 * 120.00049 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47321 * 179.97438 * 13 12 10 15 15 C 1.53510 * 114.17337 * 175.00036 * 14 13 12 16 16 N 1.47482 * 87.93436 * 139.67421 * 15 14 13 17 17 C 1.46901 * 110.99764 * 221.29834 * 16 15 14 18 18 C 1.50701 * 109.46921 * 169.99672 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46756 * 300.00019 * 25 23 21 29 29 C 1.47484 * 87.83324 * 332.98752 * 16 15 14 30 30 H 1.09000 * 109.47586 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47205 * 60.00536 * 1 2 3 32 32 H 1.09004 * 109.46879 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47360 * 239.99577 * 2 1 3 34 34 H 1.09004 * 109.46700 * 119.99603 * 2 1 3 35 35 H 1.08997 * 110.03283 * 336.99214 * 5 3 2 36 36 H 1.09002 * 110.03333 * 98.42592 * 5 3 2 37 37 H 1.09001 * 110.02929 * 119.28769 * 6 5 3 38 38 H 1.08998 * 110.02831 * 240.66486 * 6 5 3 39 39 H 1.08998 * 110.40026 * 264.75922 * 7 6 5 40 40 H 1.08995 * 110.65790 * 142.05295 * 7 6 5 41 41 H 0.96999 * 119.99506 * 359.97438 * 12 10 8 42 42 H 1.09011 * 109.47206 * 60.00018 * 13 12 10 43 43 H 1.08998 * 109.47548 * 299.99873 * 13 12 10 44 44 H 1.09000 * 113.25471 * 42.05042 * 14 13 12 45 45 H 1.08999 * 113.47482 * 24.90332 * 15 14 13 46 46 H 1.09004 * 113.52961 * 254.44912 * 15 14 13 47 47 H 1.09002 * 109.47401 * 49.99700 * 17 16 15 48 48 H 1.09001 * 109.46874 * 289.99713 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 51 51 H 1.09002 * 113.46980 * 141.77763 * 29 16 15 52 52 H 1.08997 * 113.47937 * 272.24324 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7590 2.1144 -1.3599 6 6 2.9738 3.0072 -1.6683 7 6 3.9550 2.8448 -0.4865 8 6 3.5835 1.4718 0.1265 9 1 4.0333 0.6594 -0.4442 10 6 4.0022 1.4016 1.5725 11 8 3.1641 1.2872 2.4417 12 7 5.3080 1.4659 1.8998 13 6 5.7151 1.3971 3.3053 14 6 7.2393 1.4911 3.4001 15 6 7.7773 1.5514 4.8365 16 7 8.8664 0.6533 4.4095 17 6 9.1381 -0.3672 5.4307 18 6 10.0734 -1.4056 4.8668 19 8 10.4745 -1.3051 3.7265 20 7 10.4649 -2.4453 5.6298 21 6 11.3162 -3.3897 5.1169 22 1 11.6727 -3.3007 4.1013 23 6 11.7194 -4.4618 5.9033 24 7 11.2852 -4.5704 7.1389 25 14 12.8799 -5.7482 5.2048 26 1 14.1535 -5.0995 4.8023 27 1 13.1549 -6.7796 6.2372 28 1 12.2541 -6.3879 4.0197 29 6 7.9557 0.1336 3.3723 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6466 1.3562 -2.1349 36 1 0.8558 2.7214 -1.2970 37 1 3.4507 2.6823 -2.5930 38 1 2.6599 4.0473 -1.7559 39 1 3.8064 3.6410 0.2429 40 1 4.9858 2.8380 -0.8407 41 1 5.9783 1.5570 1.2046 42 1 5.3824 0.4517 3.7342 43 1 5.2650 2.2237 3.8549 44 1 7.6667 2.2385 2.7317 45 1 7.1074 1.1032 5.5703 46 1 8.1221 2.5427 5.1308 47 1 8.2032 -0.8428 5.7269 48 1 9.5982 0.1024 6.3001 49 1 10.1444 -2.5254 6.5418 50 1 11.5670 -5.3187 7.6880 51 1 8.4518 -0.0763 2.4247 52 1 7.3334 -0.6929 3.7153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713918395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:14 Heat of formation + Delta-G solvation = -63.089637 kcal Electronic energy + Delta-G solvation = -28883.432659 eV Core-core repulsion = 24882.764769 eV Total energy + Delta-G solvation = -4000.667890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64542 -40.05080 -38.01537 -37.65120 -34.94067 -33.90855 -33.46217 -31.44280 -31.00317 -29.68658 -27.91827 -27.20186 -25.81034 -24.90696 -23.38522 -22.58826 -21.79958 -20.47895 -19.96754 -19.49000 -19.19316 -17.91901 -17.50922 -16.41730 -16.17864 -15.83608 -15.46904 -15.38975 -15.14777 -14.67643 -14.62836 -14.48650 -14.12670 -13.75400 -13.65602 -13.59825 -13.30594 -13.20026 -12.88676 -12.47646 -12.34719 -12.18778 -12.10266 -11.76335 -11.62608 -11.52191 -11.49695 -11.37111 -11.06790 -11.04888 -10.86858 -10.73943 -10.70182 -10.69452 -10.46546 -10.44343 -10.22031 -9.86861 -9.50330 -9.22512 -8.74229 -8.26626 -7.97352 -6.42314 -3.83351 2.48372 2.97950 3.19297 3.25076 3.29361 3.88381 4.02390 4.06191 4.16955 4.22226 4.30342 4.38205 4.68766 4.77159 4.82867 4.90960 4.94092 5.01768 5.04973 5.10429 5.13764 5.21952 5.26028 5.28015 5.35213 5.37957 5.40730 5.47978 5.55753 5.57273 5.57941 5.66415 5.71240 5.72340 5.74607 5.80537 5.82890 5.86370 5.92487 6.03085 6.07765 6.14869 6.19746 6.24737 6.32572 6.56688 7.19238 7.32640 7.54077 8.04500 8.06533 8.60467 9.16907 9.53102 10.04826 10.75337 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.001842 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.503303 B =15195.214875 C =15858.730463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.086 0.914 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.114 4.114 9 H 0.103 0.897 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.727 5.727 13 C 0.131 3.869 14 C -0.134 4.134 15 C 0.004 3.996 16 N -0.444 5.444 17 C 0.009 3.991 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.019 3.981 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.055 0.945 48 H 0.091 0.909 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.090 0.910 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 14.976 -12.925 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.089 4.089 4 H 0.105 0.895 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.306 3.694 11 O -0.416 6.416 12 N -0.378 5.378 13 C 0.007 3.993 14 C -0.153 4.153 15 C -0.125 4.125 16 N -0.166 5.166 17 C -0.123 4.123 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.110 4.110 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.109 0.891 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.109 0.891 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.753 15.037 -13.044 27.349 hybrid contribution 0.125 -1.200 0.447 1.286 sum -18.629 13.837 -12.597 26.404 Atomic orbital electron populations 1.21746 0.95785 1.01474 1.01704 1.21548 0.96078 0.95738 1.02017 1.21865 0.92384 0.96923 0.97773 0.89526 1.22251 0.98040 0.98699 0.96891 1.22148 0.95811 1.00106 0.98045 1.22363 0.99718 0.95368 0.97683 1.22408 0.98309 0.99990 0.92840 0.87917 1.20540 0.82165 0.75629 0.91102 1.90698 1.51088 1.48959 1.50900 1.46037 1.07683 1.74997 1.09113 1.21358 0.93527 1.02307 0.82141 1.23059 0.93256 0.99974 0.99003 1.23842 0.93370 0.99960 0.95378 1.68828 1.28162 1.12033 1.07534 1.22496 0.99443 0.94193 0.96203 1.19665 0.86133 0.83944 0.87359 1.90516 1.59785 1.77302 1.18768 1.41866 1.42424 1.21282 1.14516 1.19642 1.22161 1.01348 0.99755 0.88001 1.25267 0.98599 0.98712 0.95397 1.69606 1.45093 1.32151 1.07461 0.85911 0.80298 0.79686 0.78281 1.19880 1.20961 1.19922 1.23778 0.93472 0.94618 0.99145 0.92657 0.92873 0.92925 0.92196 0.91541 0.91505 0.91676 0.91551 0.91606 0.91139 0.90812 0.76368 0.91301 0.91207 0.87455 0.91206 0.89469 0.92669 0.89056 0.77487 0.91809 0.89132 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.79 37.16 0.36 -0.75 16 2 C -0.12 -0.96 5.32 -26.74 -0.14 -1.10 16 3 C -0.07 -0.57 1.92 -88.96 -0.17 -0.74 16 4 H 0.09 0.86 7.48 -51.93 -0.39 0.47 16 5 C -0.12 -0.75 5.69 -25.61 -0.15 -0.89 16 6 C -0.12 -0.68 6.81 -25.50 -0.17 -0.85 16 7 C -0.11 -0.69 6.27 -24.97 -0.16 -0.85 16 8 C -0.11 -0.88 2.70 -89.78 -0.24 -1.13 16 9 H 0.10 0.70 8.06 -51.93 -0.42 0.29 16 10 C 0.52 5.49 7.14 -10.99 -0.08 5.41 16 11 O -0.54 -7.74 15.65 5.55 0.09 -7.65 16 12 N -0.73 -6.64 5.53 -60.30 -0.33 -6.97 16 13 C 0.13 1.33 5.58 -4.05 -0.02 1.30 16 14 C -0.13 -1.42 4.09 -90.09 -0.37 -1.79 16 15 C 0.00 0.05 7.29 -7.55 -0.06 0.00 16 16 N -0.44 -7.25 6.06 -246.07 -1.49 -8.74 16 17 C 0.01 0.16 5.31 -4.97 -0.03 0.13 16 18 C 0.44 10.59 7.62 -10.98 -0.08 10.50 16 19 O -0.58 -15.80 15.34 5.55 0.09 -15.71 16 20 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 C 0.02 0.28 6.28 -7.54 -0.05 0.23 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.34 7.62 -51.93 -0.40 -0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 34 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 35 H 0.07 0.38 7.71 -51.93 -0.40 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.40 2.83 8.47 -40.82 -0.35 2.48 16 42 H 0.07 0.80 7.81 -51.92 -0.41 0.40 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 48 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 52 H 0.07 1.00 7.43 -51.93 -0.39 0.61 16 LS Contribution 415.61 15.07 6.26 6.26 Total: -1.00 -33.34 415.61 -10.60 -43.94 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -9.27 Total: 9.76 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.59 Total: 1.42 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.16 Total: -54.14 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.34 -10.60 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.146 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds