Wall clock time and date at job start Tue Mar 31 2020 19:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47131 * 2 1 4 4 H 1.09001 * 110.54109 * 52.38416 * 3 2 1 5 5 C 1.54266 * 110.48488 * 289.77306 * 3 2 1 6 6 C 1.53879 * 106.59594 * 217.71083 * 5 3 2 7 7 C 1.54465 * 106.68754 * 0.15832 * 6 5 3 8 8 C 1.54888 * 104.10073 * 23.34204 * 7 6 5 9 9 H 1.08999 * 110.75581 * 80.70732 * 8 7 6 10 10 C 1.50699 * 110.75611 * 203.89628 * 8 7 6 11 11 O 1.21283 * 120.00134 * 116.06419 * 10 8 7 12 12 N 1.34778 * 119.99924 * 296.06394 * 10 8 7 13 13 C 1.46493 * 120.00049 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47321 * 179.97438 * 13 12 10 15 15 C 1.53510 * 114.17337 * 175.00036 * 14 13 12 16 16 N 1.47482 * 87.93436 * 139.67421 * 15 14 13 17 17 C 1.46901 * 110.99764 * 221.29834 * 16 15 14 18 18 C 1.50701 * 109.46921 * 169.99672 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46756 * 300.00019 * 25 23 21 29 29 C 1.47484 * 87.83324 * 332.98752 * 16 15 14 30 30 H 1.09000 * 109.47586 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47205 * 60.00536 * 1 2 3 32 32 H 1.09004 * 109.46879 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47360 * 239.99577 * 2 1 3 34 34 H 1.09004 * 109.46700 * 119.99603 * 2 1 3 35 35 H 1.08997 * 110.03283 * 336.99214 * 5 3 2 36 36 H 1.09002 * 110.03333 * 98.42592 * 5 3 2 37 37 H 1.09001 * 110.02929 * 119.28769 * 6 5 3 38 38 H 1.08998 * 110.02831 * 240.66486 * 6 5 3 39 39 H 1.08998 * 110.40026 * 264.75922 * 7 6 5 40 40 H 1.08995 * 110.65790 * 142.05295 * 7 6 5 41 41 H 0.96999 * 119.99506 * 359.97438 * 12 10 8 42 42 H 1.09011 * 109.47206 * 60.00018 * 13 12 10 43 43 H 1.08998 * 109.47548 * 299.99873 * 13 12 10 44 44 H 1.09000 * 113.25471 * 42.05042 * 14 13 12 45 45 H 1.08999 * 113.47482 * 24.90332 * 15 14 13 46 46 H 1.09004 * 113.52961 * 254.44912 * 15 14 13 47 47 H 1.09002 * 109.47401 * 49.99700 * 17 16 15 48 48 H 1.09001 * 109.46874 * 289.99713 * 17 16 15 49 49 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 51 51 H 1.09002 * 113.46980 * 141.77763 * 29 16 15 52 52 H 1.08997 * 113.47937 * 272.24324 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7590 2.1144 -1.3599 6 6 2.9738 3.0072 -1.6683 7 6 3.9550 2.8448 -0.4865 8 6 3.5835 1.4718 0.1265 9 1 4.0333 0.6594 -0.4442 10 6 4.0022 1.4016 1.5725 11 8 3.1641 1.2872 2.4417 12 7 5.3080 1.4659 1.8998 13 6 5.7151 1.3971 3.3053 14 6 7.2393 1.4911 3.4001 15 6 7.7773 1.5514 4.8365 16 7 8.8664 0.6533 4.4095 17 6 9.1381 -0.3672 5.4307 18 6 10.0734 -1.4056 4.8668 19 8 10.4745 -1.3051 3.7265 20 7 10.4649 -2.4453 5.6298 21 6 11.3162 -3.3897 5.1169 22 1 11.6727 -3.3007 4.1013 23 6 11.7194 -4.4618 5.9033 24 7 11.2852 -4.5704 7.1389 25 14 12.8799 -5.7482 5.2048 26 1 14.1535 -5.0995 4.8023 27 1 13.1549 -6.7796 6.2372 28 1 12.2541 -6.3879 4.0197 29 6 7.9557 0.1336 3.3723 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6466 1.3562 -2.1349 36 1 0.8558 2.7214 -1.2970 37 1 3.4507 2.6823 -2.5930 38 1 2.6599 4.0473 -1.7559 39 1 3.8064 3.6410 0.2429 40 1 4.9858 2.8380 -0.8407 41 1 5.9783 1.5570 1.2046 42 1 5.3824 0.4517 3.7342 43 1 5.2650 2.2237 3.8549 44 1 7.6667 2.2385 2.7317 45 1 7.1074 1.1032 5.5703 46 1 8.1221 2.5427 5.1308 47 1 8.2032 -0.8428 5.7269 48 1 9.5982 0.1024 6.3001 49 1 10.1444 -2.5254 6.5418 50 1 11.5670 -5.3187 7.6880 51 1 8.4518 -0.0763 2.4247 52 1 7.3334 -0.6929 3.7153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713918395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:13 Heat of formation + Delta-G solvation = -87.512079 kcal Electronic energy + Delta-G solvation = -28884.491696 eV Core-core repulsion = 24882.764769 eV Total energy + Delta-G solvation = -4001.726927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64239 -41.02687 -39.62657 -38.56931 -36.05516 -35.76458 -34.07217 -33.34359 -32.27535 -30.46959 -28.52668 -28.36055 -26.91166 -26.63810 -24.35076 -23.54369 -22.49532 -21.29000 -21.02692 -20.59929 -20.32453 -19.90844 -18.32869 -17.85350 -17.31409 -16.72572 -16.58610 -16.51078 -16.39438 -16.07358 -15.81273 -15.53843 -15.21211 -15.04084 -14.87693 -14.39191 -14.24937 -14.07682 -13.83525 -13.68131 -13.53478 -13.43073 -13.10756 -12.95431 -12.87495 -12.75171 -12.46659 -12.36853 -12.16408 -12.14447 -12.03008 -11.85463 -11.61339 -11.56750 -11.47914 -11.45081 -11.31732 -11.22414 -10.73617 -10.36346 -10.08857 -10.04362 -9.78642 -8.48629 -5.97835 1.38048 1.39885 1.51096 1.66090 2.01947 2.19731 2.27537 2.85184 3.17239 3.24362 3.42669 3.48254 3.64568 3.71405 3.76984 4.09589 4.16322 4.20267 4.27914 4.30656 4.31524 4.38746 4.47194 4.48733 4.50063 4.50374 4.58173 4.62357 4.69799 4.70811 4.73657 4.83221 4.84258 4.87261 4.95038 5.05774 5.15300 5.18983 5.23061 5.25713 5.31422 5.34233 5.38742 5.40213 5.46942 5.49689 5.58371 5.88544 6.06293 6.56968 6.57588 7.09881 7.27368 7.52868 8.08404 8.68519 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.001842 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.503303 B =15195.214875 C =15858.730463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.062 0.938 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.109 4.109 8 C -0.112 4.112 9 H 0.116 0.884 10 C 0.516 3.484 11 O -0.583 6.583 12 N -0.718 5.718 13 C 0.137 3.863 14 C -0.103 4.103 15 C 0.010 3.990 16 N -0.472 5.472 17 C 0.021 3.979 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.011 3.989 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.414 0.586 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.067 0.933 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.399 15.932 -13.859 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.080 0.920 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.133 4.133 9 H 0.134 0.866 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.370 5.370 13 C 0.013 3.987 14 C -0.122 4.122 15 C -0.119 4.119 16 N -0.195 5.195 17 C -0.111 4.111 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.251 0.749 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.093 0.907 48 H 0.128 0.872 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.986 16.013 -13.974 28.499 hybrid contribution 0.175 -1.471 0.744 1.657 sum -18.811 14.543 -13.230 27.210 Atomic orbital electron populations 1.21733 0.95236 1.01720 1.01840 1.21535 0.96635 0.95887 1.01250 1.21822 0.92509 0.96486 0.98214 0.91984 1.22226 0.98616 0.98947 0.95666 1.22155 0.95239 1.00340 0.98126 1.22374 1.00981 0.93728 0.97617 1.22454 0.98168 1.01615 0.91036 0.86621 1.21067 0.81997 0.74594 0.91977 1.90679 1.52252 1.51018 1.52323 1.45984 1.07718 1.74180 1.09143 1.21220 0.93010 1.01751 0.82756 1.22870 0.93042 0.97473 0.98770 1.23934 0.91985 0.99834 0.96174 1.68825 1.30550 1.12246 1.07855 1.22386 0.98732 0.93142 0.96807 1.20735 0.85749 0.84093 0.86703 1.90481 1.61194 1.78202 1.20558 1.41952 1.42658 1.21703 1.14859 1.19619 1.24137 1.03227 0.99392 0.90328 1.26071 0.99647 1.00041 0.95648 1.69670 1.45542 1.32781 1.08118 0.84975 0.78104 0.77263 0.77915 1.19663 1.19435 1.19655 1.23781 0.93558 0.96665 0.97776 0.93785 0.91437 0.92633 0.90921 0.94206 0.90621 0.91436 0.90326 0.91015 0.91995 0.89045 0.74929 0.92869 0.90574 0.85815 0.89912 0.87505 0.90682 0.87230 0.77049 0.91268 0.91467 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.79 71.98 0.70 -1.46 16 2 C -0.12 -1.90 5.32 30.59 0.16 -1.74 16 3 C -0.07 -1.12 1.92 -9.72 -0.02 -1.14 16 4 H 0.06 1.28 7.48 -2.39 -0.02 1.27 16 5 C -0.12 -1.24 5.69 31.32 0.18 -1.06 16 6 C -0.12 -1.04 6.81 31.39 0.21 -0.83 16 7 C -0.11 -1.12 6.27 31.74 0.20 -0.92 16 8 C -0.11 -1.61 2.70 -10.25 -0.03 -1.64 16 9 H 0.12 1.39 8.06 -2.39 -0.02 1.37 16 10 C 0.52 10.73 7.14 87.66 0.63 11.36 16 11 O -0.58 -17.13 15.65 -3.04 -0.05 -17.18 16 12 N -0.72 -12.31 5.53 -463.06 -2.56 -14.88 16 13 C 0.14 2.61 5.58 86.38 0.48 3.09 16 14 C -0.10 -1.98 4.09 -10.45 -0.04 -2.03 16 15 C 0.01 0.20 7.29 83.57 0.61 0.81 16 16 N -0.47 -14.90 6.06 -932.44 -5.65 -20.56 16 17 C 0.02 0.73 5.31 85.56 0.45 1.19 16 18 C 0.44 21.32 7.62 87.66 0.67 21.99 16 19 O -0.62 -34.65 15.34 -3.07 -0.05 -34.70 16 20 N -0.57 -29.99 5.29 -306.98 -1.62 -31.61 16 21 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 C 0.01 0.33 6.28 83.57 0.53 0.85 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.78 7.62 -2.39 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.99 7.95 -2.39 -0.02 0.97 16 34 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 35 H 0.08 0.68 7.71 -2.39 -0.02 0.67 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.75 8.04 -2.39 -0.02 0.73 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.41 5.08 8.47 -92.71 -0.79 4.29 16 42 H 0.05 1.21 7.81 -2.38 -0.02 1.20 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 1.57 7.73 -2.39 -0.02 1.55 16 46 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 2.32 7.56 -2.39 -0.02 2.30 16 48 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 52 H 0.06 1.77 7.43 -2.39 -0.02 1.76 16 Total: -1.00 -74.22 415.61 -2.21 -76.44 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.61 Total: 37.29 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.01 Total: 9.79 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -9.56 Total: -116.90 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.09 Total: -51.87 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.22 -2.21 -76.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713918395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.077 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds