Wall clock time and date at job start Tue Mar 31 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 H 1.09002 * 109.46824 * 305.22842 * 3 2 1 5 5 C 1.52996 * 109.47264 * 185.22894 * 3 2 1 6 6 N 1.46498 * 109.47290 * 184.99787 * 5 3 2 7 7 C 1.34779 * 120.00087 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99832 * 179.97438 * 7 6 5 10 10 H 1.08992 * 115.57656 * 325.58523 * 9 7 6 11 11 C 1.52308 * 117.53579 * 111.43760 * 9 7 6 12 12 H 1.09006 * 115.91315 * 0.84290 * 11 9 7 13 13 C 1.52076 * 119.83561 * 217.19562 * 11 9 7 14 14 C 1.52871 * 110.51432 * 310.44382 * 13 11 9 15 15 C 1.53301 * 108.59023 * 305.11657 * 14 13 11 16 16 C 1.51043 * 108.39479 * 74.32971 * 15 14 13 17 17 C 1.52304 * 60.58691 * 107.40819 * 11 9 7 18 18 H 1.08999 * 117.29789 * 252.89630 * 17 11 9 19 19 N 1.46897 * 109.47204 * 65.22918 * 3 2 1 20 20 C 1.46899 * 111.00275 * 58.35178 * 19 3 2 21 21 C 1.50703 * 109.47371 * 174.48828 * 20 19 3 22 22 O 1.21297 * 119.99649 * 0.02562 * 21 20 19 23 23 N 1.34769 * 119.99951 * 179.72597 * 21 20 19 24 24 C 1.37108 * 120.00037 * 180.27667 * 23 21 20 25 25 H 1.08000 * 119.99777 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00101 * 180.02562 * 24 23 21 27 27 N 1.31410 * 119.99766 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 119.99809 * 180.02562 * 26 24 23 29 29 H 1.48503 * 109.47259 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47057 * 120.00268 * 28 26 24 31 31 H 1.48502 * 109.46996 * 239.99997 * 28 26 24 32 32 H 1.09000 * 109.47186 * 294.89257 * 1 2 3 33 33 H 1.08996 * 109.46682 * 54.89308 * 1 2 3 34 34 H 1.08995 * 109.46755 * 174.89119 * 1 2 3 35 35 H 1.08993 * 109.47493 * 239.99363 * 2 1 3 36 36 H 1.09000 * 109.46916 * 119.99812 * 2 1 3 37 37 H 1.09003 * 109.47020 * 305.00318 * 5 3 2 38 38 H 1.09006 * 109.47131 * 64.99710 * 5 3 2 39 39 H 0.96999 * 120.00247 * 0.02562 * 6 5 3 40 40 H 1.09000 * 109.26701 * 70.71187 * 13 11 9 41 41 H 1.08999 * 109.26223 * 190.18140 * 13 11 9 42 42 H 1.08999 * 109.61274 * 64.84456 * 14 13 11 43 43 H 1.08992 * 109.61538 * 185.38088 * 14 13 11 44 44 H 1.09003 * 109.61637 * 194.17573 * 15 14 13 45 45 H 1.09002 * 109.61737 * 314.52812 * 15 14 13 46 46 H 1.08998 * 109.13916 * 184.71849 * 16 15 14 47 47 H 1.08999 * 108.57205 * 65.72589 * 16 15 14 48 48 H 1.00904 * 110.99716 * 294.39756 * 19 3 2 49 49 H 1.09005 * 109.46506 * 54.49356 * 20 19 3 50 50 H 1.08999 * 109.47638 * 294.49200 * 20 19 3 51 51 H 0.97001 * 120.00408 * 0.28394 * 23 21 20 52 52 H 0.97001 * 119.99838 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5644 1.4445 -0.1315 6 7 4.0630 2.8168 -0.0118 7 6 5.3854 3.0631 -0.0963 8 8 6.1626 2.1486 -0.2719 9 6 5.8983 4.4748 0.0262 10 1 5.2517 5.2480 -0.3885 11 6 6.7070 4.8248 1.2685 12 1 6.8672 4.0122 1.9772 13 6 6.5508 6.1938 1.9121 14 6 6.6726 7.2970 0.8609 15 6 8.0012 7.1189 0.1173 16 6 7.8686 5.9423 -0.8204 17 6 7.4165 4.6901 -0.0724 18 1 8.0361 3.8061 -0.2235 19 7 1.6562 2.0976 1.2575 20 6 2.1971 1.3729 2.4152 21 6 1.8994 2.1447 3.6749 22 8 1.2956 3.1949 3.6143 23 7 2.2989 1.6650 4.8693 24 6 2.0231 2.3643 6.0159 25 1 1.4854 3.2994 5.9620 26 6 2.4353 1.8700 7.2473 27 7 3.0900 0.7325 7.3129 28 14 2.0589 2.8225 8.8095 29 1 1.3172 4.0625 8.4667 30 1 1.2313 1.9838 9.7133 31 1 3.3297 3.1787 9.4904 32 1 -0.3633 0.4326 0.9322 33 1 -0.3632 0.5910 -0.8407 34 1 -0.3633 -1.0236 -0.0915 35 1 1.8934 -0.5139 -0.8898 36 1 1.8933 -0.5138 0.8900 37 1 3.9979 0.8302 0.6577 38 1 3.8458 1.0391 -1.1034 39 1 3.4416 3.5482 0.1290 40 1 5.5726 6.2576 2.3888 41 1 7.3270 6.3276 2.6656 42 1 5.8453 7.2228 0.1551 43 1 6.6542 8.2713 1.3492 44 1 8.2260 8.0212 -0.4517 45 1 8.7998 6.9305 0.8348 46 1 8.8318 5.7523 -1.2939 47 1 7.1342 6.1901 -1.5868 48 1 0.6537 2.1907 1.3254 49 1 3.2758 1.2626 2.3031 50 1 1.7353 0.3874 2.4752 51 1 2.7816 0.8250 4.9178 52 1 3.3775 0.3872 8.1726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714067984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:05 Heat of formation + Delta-G solvation = -95.158939 kcal Electronic energy + Delta-G solvation = -30031.046909 eV Core-core repulsion = 26028.988389 eV Total energy + Delta-G solvation = -4002.058519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50309 -40.43074 -39.58436 -38.51543 -35.96319 -35.10248 -34.07509 -33.31694 -32.79544 -31.73167 -29.97905 -28.24961 -26.51936 -25.93012 -24.34798 -23.47059 -22.74888 -21.78811 -21.05964 -20.49247 -19.88396 -19.43891 -18.37019 -18.28368 -17.13105 -17.03137 -16.54307 -16.36207 -16.07222 -15.87558 -15.69138 -15.27376 -15.15431 -14.89144 -14.85446 -14.74105 -14.51046 -14.29947 -14.04745 -13.55810 -13.54164 -13.27477 -13.18778 -13.11817 -12.91149 -12.76254 -12.70427 -12.40842 -12.32191 -12.12183 -12.01772 -11.86785 -11.75425 -11.70187 -11.50854 -11.20733 -10.96860 -10.80375 -10.58903 -10.34958 -10.01815 -10.01216 -9.35029 -8.47079 -5.95925 1.35709 1.40725 1.48343 1.55062 2.05174 2.17286 2.28560 2.79929 2.92715 3.20126 3.49854 3.63228 3.70787 3.73681 3.77059 3.97434 4.00312 4.09521 4.15160 4.18660 4.26600 4.33226 4.36142 4.40036 4.45031 4.51454 4.56138 4.62503 4.69175 4.73140 4.78440 4.82054 4.91608 4.98796 5.05123 5.08667 5.10070 5.23556 5.25411 5.33186 5.36154 5.36422 5.40362 5.42570 5.48853 5.53564 5.86655 6.07432 6.39503 6.58834 6.60855 7.12221 7.26515 7.55834 8.10499 8.70722 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.003582 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.686678 B = 7814.250579 C =10701.855063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.114 0.886 5 C 0.125 3.875 6 N -0.703 5.703 7 C 0.534 3.466 8 O -0.591 6.591 9 C -0.189 4.189 10 H 0.143 0.857 11 C -0.114 4.114 12 H 0.075 0.925 13 C -0.090 4.090 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.086 4.086 17 C -0.104 4.104 18 H 0.096 0.904 19 N -0.663 5.663 20 C 0.064 3.936 21 C 0.442 3.558 22 O -0.616 6.616 23 N -0.577 5.577 24 C -0.330 4.330 25 H 0.081 0.919 26 C -0.015 4.015 27 N -0.923 5.923 28 Si 0.992 3.008 29 H -0.271 1.271 30 H -0.271 1.271 31 H -0.273 1.273 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.352 0.648 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.393 0.607 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 6.151 -18.606 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.131 0.869 5 C 0.001 3.999 6 N -0.353 5.353 7 C 0.322 3.678 8 O -0.473 6.473 9 C -0.210 4.210 10 H 0.161 0.839 11 C -0.133 4.133 12 H 0.094 0.906 13 C -0.127 4.127 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.123 4.123 17 C -0.122 4.122 18 H 0.114 0.886 19 N -0.296 5.296 20 C -0.069 4.069 21 C 0.229 3.771 22 O -0.502 6.502 23 N -0.214 5.214 24 C -0.460 4.460 25 H 0.099 0.901 26 C -0.214 4.214 27 N -0.564 5.564 28 Si 0.816 3.184 29 H -0.195 1.195 30 H -0.196 1.196 31 H -0.198 1.198 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.252 0.748 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.173 0.827 49 H 0.105 0.895 50 H 0.083 0.917 51 H 0.226 0.774 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.122 6.548 -18.635 20.405 hybrid contribution -0.788 -1.146 1.380 1.959 sum 4.334 5.402 -17.255 18.593 Atomic orbital electron populations 1.21739 0.94654 1.02579 1.01795 1.22176 0.97160 0.96920 1.03376 1.21964 0.93308 0.94508 0.92747 0.86858 1.21462 0.93681 0.83292 1.01476 1.45766 1.06972 1.10536 1.71998 1.20166 0.82313 0.90303 0.75057 1.90640 1.57181 1.47586 1.51885 1.22513 0.97035 0.94529 1.06889 0.83949 1.21854 1.01672 0.99402 0.90372 0.90648 1.20907 1.02126 0.91390 0.98312 1.21643 0.98318 0.98038 0.97735 1.21259 0.97349 0.98111 0.98663 1.20754 1.02202 0.91774 0.97569 1.22381 0.91094 1.00605 0.98160 0.88623 1.60138 1.18502 1.51189 0.99778 1.21498 1.01274 0.95269 0.88845 1.20803 0.83395 0.87499 0.85380 1.90484 1.46319 1.26090 1.87278 1.41969 1.51217 1.22854 1.05341 1.19707 1.35549 1.05826 0.84903 0.90112 1.26051 0.96152 0.97231 1.01964 1.69691 1.38795 1.20317 1.27615 0.84878 0.78240 0.78109 0.77180 1.19511 1.19602 1.19798 0.94109 0.91103 0.91753 0.89446 0.92347 0.93507 0.90264 0.74774 0.92105 0.90780 0.91431 0.90541 0.89877 0.91934 0.90381 0.90613 0.82722 0.89520 0.91667 0.77392 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.57 71.98 0.69 -1.86 16 2 C -0.16 -2.81 5.15 30.60 0.16 -2.65 16 3 C 0.08 1.71 2.70 44.91 0.12 1.83 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.13 3.00 4.72 86.38 0.41 3.40 16 6 N -0.70 -18.11 5.39 -463.05 -2.50 -20.60 16 7 C 0.53 15.77 7.61 87.66 0.67 16.44 16 8 O -0.59 -21.70 16.26 -3.04 -0.05 -21.75 16 9 C -0.19 -4.51 5.31 -11.55 -0.06 -4.58 16 10 H 0.14 2.74 7.26 -2.39 -0.02 2.73 16 11 C -0.11 -2.85 5.71 -11.56 -0.07 -2.91 16 12 H 0.08 2.28 8.14 -2.38 -0.02 2.27 16 13 C -0.09 -1.91 5.93 30.25 0.18 -1.73 16 14 C -0.12 -1.90 5.70 30.65 0.17 -1.73 16 15 C -0.12 -1.63 5.88 30.06 0.18 -1.45 16 16 C -0.09 -1.34 5.67 29.86 0.17 -1.17 16 17 C -0.10 -2.32 5.77 -10.90 -0.06 -2.38 16 18 H 0.10 2.52 7.67 -2.39 -0.02 2.50 16 19 N -0.66 -18.44 5.35 -495.58 -2.65 -21.10 16 20 C 0.06 2.16 5.33 85.56 0.46 2.62 16 21 C 0.44 20.83 7.83 87.66 0.69 21.51 16 22 O -0.62 -33.09 15.90 -3.08 -0.05 -33.13 16 23 N -0.58 -29.94 5.29 -306.98 -1.62 -31.57 16 24 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 25 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 26 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 27 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 28 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 31 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 32 H 0.04 0.83 7.16 -2.39 -0.02 0.81 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.22 6.22 -2.39 -0.01 1.21 16 37 H 0.05 1.33 6.59 -2.39 -0.02 1.31 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.42 10.03 8.14 -92.71 -0.75 9.27 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.03 7.10 -2.39 -0.02 1.01 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.93 8.05 -2.39 -0.02 0.91 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 48 H 0.35 10.02 7.40 -89.69 -0.66 9.36 16 49 H 0.09 2.99 6.18 -2.38 -0.01 2.98 16 50 H 0.07 2.01 6.48 -2.39 -0.02 2.00 16 51 H 0.39 19.81 7.90 -92.71 -0.73 19.07 16 52 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -70.52 409.41 -0.79 -71.31 By element: Atomic # 1 Polarization: 56.23 SS G_CDS: -1.20 Total: 55.03 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.98 Total: 6.99 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.49 Total: -123.69 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.10 Total: -54.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.52 -0.79 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714067984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.851 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds