Wall clock time and date at job start Tue Mar 31 2020 19:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09008 * 115.55113 * 29.42177 * 3 2 1 5 5 C 1.52999 * 117.50360 * 243.74683 * 3 2 1 6 6 C 1.53002 * 117.50114 * 175.08540 * 3 2 1 7 7 H 1.08998 * 117.50090 * 359.97438 * 6 3 2 8 8 C 1.50707 * 117.49894 * 214.97968 * 6 3 2 9 9 O 1.21275 * 119.99833 * 0.02562 * 8 6 3 10 10 N 1.34778 * 119.99952 * 180.02562 * 8 6 3 11 11 C 1.46923 * 120.62774 * 0.02562 * 10 8 6 12 12 C 1.53196 * 108.77451 * 233.58487 * 11 10 8 13 13 C 1.53039 * 109.31537 * 305.36707 * 12 11 10 14 14 C 1.53046 * 109.53705 * 61.36223 * 13 12 11 15 15 H 1.09002 * 109.49320 * 58.58737 * 14 13 12 16 16 C 1.53001 * 109.49838 * 178.68641 * 14 13 12 17 17 N 1.46896 * 109.47037 * 295.00080 * 16 14 13 18 18 C 1.46896 * 111.00098 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47387 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00003 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00210 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00065 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99839 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00327 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00055 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99597 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47058 * 89.99636 * 26 24 22 28 28 H 1.48498 * 109.46930 * 209.99693 * 26 24 22 29 29 H 1.48502 * 109.47080 * 329.99805 * 26 24 22 30 30 C 1.46923 * 120.63131 * 179.72334 * 10 8 6 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 1.09001 * 117.49798 * 359.97438 * 5 3 2 37 37 H 1.09003 * 117.49878 * 145.01349 * 5 3 2 38 38 H 1.09006 * 109.59283 * 353.36963 * 11 10 8 39 39 H 1.09001 * 109.58827 * 113.80293 * 11 10 8 40 40 H 1.09009 * 109.49678 * 65.32107 * 12 11 10 41 41 H 1.09001 * 109.50111 * 185.41176 * 12 11 10 42 42 H 1.08995 * 109.46124 * 181.38075 * 13 12 11 43 43 H 1.08996 * 109.45762 * 301.36118 * 13 12 11 44 44 H 1.08994 * 109.47027 * 55.00107 * 16 14 13 45 45 H 1.09000 * 109.46880 * 174.99917 * 16 14 13 46 46 H 1.00898 * 111.00439 * 56.03968 * 17 16 14 47 47 H 1.08992 * 109.47393 * 299.99929 * 18 17 16 48 48 H 1.09000 * 109.46991 * 60.00146 * 18 17 16 49 49 H 0.96994 * 119.99755 * 0.02562 * 21 19 18 50 50 H 0.97002 * 119.99495 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.58237 * 246.20351 * 30 10 8 52 52 H 1.08999 * 109.58586 * 6.62166 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3892 2.1713 0.4831 5 6 2.8415 1.9084 -1.2171 6 6 3.5504 1.6577 0.1163 7 1 4.1806 0.7717 0.1932 8 6 4.0242 2.8615 0.8894 9 8 3.2179 3.6156 1.3913 10 7 5.3440 3.0999 1.0229 11 6 6.3327 2.1956 0.4201 12 6 7.3170 1.7474 1.5051 13 6 7.9222 2.9804 2.1801 14 6 6.8112 3.7977 2.8435 15 1 6.2903 3.1782 3.5736 16 6 7.4209 5.0126 3.5459 17 7 8.2812 4.5606 4.6475 18 6 8.8856 5.7028 5.3461 19 6 9.7587 5.2011 6.4673 20 8 9.8671 4.0093 6.6647 21 7 10.4190 6.0767 7.2507 22 6 11.2137 5.6203 8.2704 23 1 11.3102 4.5590 8.4461 24 6 11.8949 6.5229 9.0777 25 7 12.6562 6.0854 10.0554 26 14 11.7274 8.3585 8.7741 27 1 10.5893 8.8894 9.5666 28 1 12.9790 9.0443 9.1844 29 1 11.4807 8.6009 7.3299 30 6 5.8212 4.2725 1.7685 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.0058 1.1872 -2.0177 37 1 2.7181 2.9438 -1.5346 38 1 5.8259 1.3247 0.0043 39 1 6.8725 2.7185 -0.3695 40 1 6.7913 1.1472 2.2478 41 1 8.1113 1.1536 1.0529 42 1 8.6412 2.6645 2.9359 43 1 8.4263 3.5929 1.4326 44 1 8.0143 5.5847 2.8327 45 1 6.6235 5.6413 3.9420 46 1 8.9900 3.9241 4.3151 47 1 9.4893 6.2793 4.6452 48 1 8.0986 6.3366 5.7547 49 1 10.3320 7.0298 7.0930 50 1 13.1315 6.7156 10.6192 51 1 6.3201 4.9609 1.0864 52 1 4.9766 4.7725 2.2426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714080103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:05 Heat of formation + Delta-G solvation = -56.150131 kcal Electronic energy + Delta-G solvation = -28719.876525 eV Core-core repulsion = 24719.509555 eV Total energy + Delta-G solvation = -4000.366970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74294 -38.82781 -38.29125 -37.10455 -35.68344 -33.95772 -32.92394 -32.40486 -31.76421 -31.56672 -27.73163 -26.26673 -25.36339 -24.33105 -23.80900 -22.94300 -22.34150 -20.95889 -20.25277 -19.36361 -19.11799 -18.34277 -17.63743 -16.48857 -16.09029 -15.75206 -15.64753 -15.13676 -14.95827 -14.85059 -14.71043 -14.50773 -14.25692 -14.15001 -13.66863 -13.49730 -13.21780 -13.15570 -12.88785 -12.83385 -12.64668 -12.53804 -12.39628 -11.96907 -11.90078 -11.78748 -11.70042 -11.46272 -11.41908 -11.16865 -11.03327 -10.89576 -10.70053 -10.59141 -10.56344 -10.38552 -9.99617 -9.96633 -9.56795 -8.92430 -8.57548 -8.18835 -8.12594 -6.30709 -3.82085 2.19402 2.61706 3.02744 3.07624 3.15425 3.39801 3.74827 4.00234 4.08551 4.12021 4.28786 4.31100 4.42389 4.56707 4.61069 4.67368 4.76324 4.78841 4.90508 4.95063 4.97870 5.00429 5.09866 5.19017 5.21782 5.22664 5.33172 5.38305 5.42564 5.44832 5.49051 5.53272 5.56828 5.63731 5.66723 5.67416 5.73303 5.80294 5.83499 5.89616 5.94760 5.96315 6.04622 6.16476 6.26958 7.09079 7.11385 7.58007 7.59729 7.90935 8.15031 8.60431 8.95462 9.43016 9.83436 10.82439 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.001663 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.127918 B =16828.812701 C =16900.750656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.125 0.875 8 C 0.545 3.455 9 O -0.542 6.542 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.098 4.098 15 H 0.087 0.913 16 C 0.066 3.934 17 N -0.668 5.668 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 C 0.117 3.883 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.350 0.650 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.067 0.933 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 -7.263 -27.009 33.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.214 4.214 7 H 0.143 0.857 8 C 0.334 3.666 9 O -0.419 6.419 10 N -0.339 5.339 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.118 4.118 15 H 0.105 0.895 16 C -0.064 4.064 17 N -0.301 5.301 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.005 4.005 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.851 -7.685 -25.967 32.995 hybrid contribution 0.972 1.840 -0.657 2.183 sum -17.879 -5.844 -26.624 32.598 Atomic orbital electron populations 1.21741 0.95082 1.01723 1.02193 1.21158 0.96393 0.93517 1.02193 1.22500 0.91357 0.98839 1.00858 0.86410 1.23111 1.02057 1.03130 0.90244 1.22350 0.97736 0.99059 1.02245 0.85737 1.19662 0.81734 0.85531 0.79723 1.90691 1.53497 1.48913 1.48784 1.47984 1.05336 1.26864 1.53711 1.21823 0.90509 0.93648 0.95622 1.21919 0.98716 0.98320 0.98358 1.21623 0.97880 0.96309 0.99948 1.21598 0.96119 0.97395 0.96682 0.89472 1.21901 0.96894 0.95775 0.91856 1.60068 1.26263 1.16074 1.27714 1.21705 0.97660 0.93232 0.95911 1.19720 0.84242 0.87110 0.85358 1.90561 1.66018 1.15704 1.72399 1.42205 1.43482 1.07173 1.30167 1.19437 1.21424 0.96740 1.05810 0.86294 1.25034 0.96594 0.98496 0.96008 1.69624 1.29312 1.35059 1.18155 0.86667 0.78823 0.85364 0.78496 1.19585 1.20195 1.19548 1.21715 0.98354 0.86956 0.93513 0.92544 0.92413 0.92553 0.91315 0.91660 0.87778 0.88344 0.89590 0.91250 0.91158 0.90488 0.90612 0.91950 0.95336 0.90783 0.82985 0.93801 0.89439 0.79685 0.91626 0.91492 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.87 37.16 0.37 -0.43 16 2 C -0.10 -0.53 6.21 -26.74 -0.17 -0.70 16 3 C -0.12 -0.86 5.25 -90.62 -0.48 -1.33 16 4 H 0.12 1.10 7.60 -51.92 -0.39 0.70 16 5 C -0.15 -0.91 9.88 -26.69 -0.26 -1.17 16 6 C -0.19 -1.46 4.85 -91.73 -0.44 -1.90 16 7 H 0.12 0.72 6.57 -51.93 -0.34 0.38 16 8 C 0.55 5.92 7.48 -10.98 -0.08 5.84 16 9 O -0.54 -7.94 15.67 5.56 0.09 -7.85 16 10 N -0.61 -5.64 2.97 -172.48 -0.51 -6.15 16 11 C 0.11 0.70 6.34 -3.71 -0.02 0.67 16 12 C -0.13 -0.98 6.08 -26.61 -0.16 -1.14 16 13 C -0.12 -1.08 4.97 -26.69 -0.13 -1.21 16 14 C -0.10 -1.02 2.56 -90.25 -0.23 -1.25 16 15 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.07 0.76 5.15 -3.83 -0.02 0.74 16 17 N -0.67 -10.32 6.12 -115.07 -0.70 -11.02 16 18 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 19 C 0.45 10.31 7.82 -10.99 -0.09 10.22 16 20 O -0.56 -15.29 15.78 5.55 0.09 -15.20 16 21 N -0.59 -14.19 5.09 -10.96 -0.06 -14.25 16 22 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 23 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 26 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 30 C 0.12 1.15 5.75 -3.47 -0.02 1.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.29 7.88 -51.93 -0.41 -0.12 16 36 H 0.10 0.43 8.03 -51.93 -0.42 0.02 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.42 5.51 -51.93 -0.29 0.13 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.80 6.62 -51.93 -0.34 0.45 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.35 5.51 6.66 -39.29 -0.26 5.25 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -34.70 411.55 -9.80 -44.50 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.95 Total: 11.70 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.02 Total: 2.41 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.50 Total: -56.51 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.17 Total: -23.05 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.70 -9.80 -44.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714080103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds