Wall clock time and date at job start Tue Mar 31 2020 19:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09008 * 115.55113 * 29.42177 * 3 2 1 5 5 C 1.52999 * 117.50360 * 243.74683 * 3 2 1 6 6 C 1.53002 * 117.50114 * 175.08540 * 3 2 1 7 7 H 1.08998 * 117.50090 * 359.97438 * 6 3 2 8 8 C 1.50707 * 117.49894 * 214.97968 * 6 3 2 9 9 O 1.21275 * 119.99833 * 0.02562 * 8 6 3 10 10 N 1.34778 * 119.99952 * 180.02562 * 8 6 3 11 11 C 1.46923 * 120.62774 * 0.02562 * 10 8 6 12 12 C 1.53196 * 108.77451 * 233.58487 * 11 10 8 13 13 C 1.53039 * 109.31537 * 305.36707 * 12 11 10 14 14 C 1.53046 * 109.53705 * 61.36223 * 13 12 11 15 15 H 1.09002 * 109.49320 * 58.58737 * 14 13 12 16 16 C 1.53001 * 109.49838 * 178.68641 * 14 13 12 17 17 N 1.46896 * 109.47037 * 295.00080 * 16 14 13 18 18 C 1.46896 * 111.00098 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47387 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00003 * 0.02562 * 19 18 17 21 21 N 1.34778 * 120.00210 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00065 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99839 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00327 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00055 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99597 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47058 * 89.99636 * 26 24 22 28 28 H 1.48498 * 109.46930 * 209.99693 * 26 24 22 29 29 H 1.48502 * 109.47080 * 329.99805 * 26 24 22 30 30 C 1.46923 * 120.63131 * 179.72334 * 10 8 6 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 1.09001 * 117.49798 * 359.97438 * 5 3 2 37 37 H 1.09003 * 117.49878 * 145.01349 * 5 3 2 38 38 H 1.09006 * 109.59283 * 353.36963 * 11 10 8 39 39 H 1.09001 * 109.58827 * 113.80293 * 11 10 8 40 40 H 1.09009 * 109.49678 * 65.32107 * 12 11 10 41 41 H 1.09001 * 109.50111 * 185.41176 * 12 11 10 42 42 H 1.08995 * 109.46124 * 181.38075 * 13 12 11 43 43 H 1.08996 * 109.45762 * 301.36118 * 13 12 11 44 44 H 1.08994 * 109.47027 * 55.00107 * 16 14 13 45 45 H 1.09000 * 109.46880 * 174.99917 * 16 14 13 46 46 H 1.00898 * 111.00439 * 56.03968 * 17 16 14 47 47 H 1.08992 * 109.47393 * 299.99929 * 18 17 16 48 48 H 1.09000 * 109.46991 * 60.00146 * 18 17 16 49 49 H 0.96994 * 119.99755 * 0.02562 * 21 19 18 50 50 H 0.97002 * 119.99495 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.58237 * 246.20351 * 30 10 8 52 52 H 1.08999 * 109.58586 * 6.62166 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3892 2.1713 0.4831 5 6 2.8415 1.9084 -1.2171 6 6 3.5504 1.6577 0.1163 7 1 4.1806 0.7717 0.1932 8 6 4.0242 2.8615 0.8894 9 8 3.2179 3.6156 1.3913 10 7 5.3440 3.0999 1.0229 11 6 6.3327 2.1956 0.4201 12 6 7.3170 1.7474 1.5051 13 6 7.9222 2.9804 2.1801 14 6 6.8112 3.7977 2.8435 15 1 6.2903 3.1782 3.5736 16 6 7.4209 5.0126 3.5459 17 7 8.2812 4.5606 4.6475 18 6 8.8856 5.7028 5.3461 19 6 9.7587 5.2011 6.4673 20 8 9.8671 4.0093 6.6647 21 7 10.4190 6.0767 7.2507 22 6 11.2137 5.6203 8.2704 23 1 11.3102 4.5590 8.4461 24 6 11.8949 6.5229 9.0777 25 7 12.6562 6.0854 10.0554 26 14 11.7274 8.3585 8.7741 27 1 10.5893 8.8894 9.5666 28 1 12.9790 9.0443 9.1844 29 1 11.4807 8.6009 7.3299 30 6 5.8212 4.2725 1.7685 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.0058 1.1872 -2.0177 37 1 2.7181 2.9438 -1.5346 38 1 5.8259 1.3247 0.0043 39 1 6.8725 2.7185 -0.3695 40 1 6.7913 1.1472 2.2478 41 1 8.1113 1.1536 1.0529 42 1 8.6412 2.6645 2.9359 43 1 8.4263 3.5929 1.4326 44 1 8.0143 5.5847 2.8327 45 1 6.6235 5.6413 3.9420 46 1 8.9900 3.9241 4.3151 47 1 9.4893 6.2793 4.6452 48 1 8.0986 6.3366 5.7547 49 1 10.3320 7.0298 7.0930 50 1 13.1315 6.7156 10.6192 51 1 6.3201 4.9609 1.0864 52 1 4.9766 4.7725 2.2426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714080103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:04 Heat of formation + Delta-G solvation = -80.868384 kcal Electronic energy + Delta-G solvation = -28720.948389 eV Core-core repulsion = 24719.509555 eV Total energy + Delta-G solvation = -4001.438834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49167 -40.34630 -39.33470 -37.84435 -36.80386 -35.92603 -33.90525 -33.68034 -32.90913 -32.45394 -29.06271 -27.10270 -26.63904 -25.23796 -24.66746 -23.82088 -23.12477 -21.50571 -21.32838 -20.99925 -20.26414 -19.81139 -18.37726 -17.80146 -17.18285 -17.07742 -16.70502 -16.44877 -15.90256 -15.74343 -15.50488 -15.41298 -15.23182 -15.04015 -14.97778 -14.68962 -14.43226 -14.28822 -14.04234 -13.93891 -13.47342 -13.38863 -13.22260 -13.07802 -12.98536 -12.87111 -12.79426 -12.42175 -12.20344 -12.10705 -11.98741 -11.94582 -11.81960 -11.68438 -11.52909 -11.32828 -11.24947 -10.91380 -10.76775 -10.45549 -10.26097 -9.67172 -9.32648 -8.42383 -6.03500 1.29503 1.35298 1.43194 1.43994 1.92009 1.93959 2.22257 2.72003 2.83723 3.13895 3.40362 3.41151 3.71143 3.73255 3.83666 3.85817 3.94277 4.07330 4.11778 4.19244 4.25719 4.29259 4.38319 4.42494 4.47497 4.50219 4.53510 4.56766 4.57102 4.70599 4.77698 4.80879 4.84328 4.87073 4.92872 4.99394 5.11574 5.15530 5.15871 5.22526 5.27439 5.29192 5.42484 5.48542 5.51348 5.52372 5.89371 6.04154 6.36237 6.40532 6.58669 6.86605 7.12572 7.38266 7.94742 8.75248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.001663 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.127918 B =16828.812701 C =16900.750656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.128 4.128 4 H 0.089 0.911 5 C -0.128 4.128 6 C -0.196 4.196 7 H 0.149 0.851 8 C 0.535 3.465 9 O -0.592 6.592 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.089 4.089 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.689 5.689 18 C 0.062 3.938 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.590 5.590 22 C -0.331 4.331 23 H 0.055 0.945 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.230 1.230 30 C 0.121 3.879 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.345 0.655 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.087 0.913 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 -5.698 -30.622 36.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.147 4.147 4 H 0.107 0.893 5 C -0.166 4.166 6 C -0.217 4.217 7 H 0.166 0.834 8 C 0.325 3.675 9 O -0.473 6.473 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.109 4.109 15 H 0.074 0.926 16 C -0.060 4.060 17 N -0.323 5.323 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.073 0.927 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.199 1.199 29 H -0.154 1.154 30 C -0.002 4.002 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.165 0.835 47 H 0.097 0.903 48 H 0.129 0.871 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.105 0.895 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.155 -6.130 -29.619 35.801 hybrid contribution 1.064 1.221 0.505 1.697 sum -18.090 -4.909 -29.114 34.626 Atomic orbital electron populations 1.21750 0.95161 1.02207 1.01723 1.21148 0.96320 0.92293 1.02953 1.22480 0.90953 0.99367 1.01914 0.89309 1.23199 0.99931 1.03349 0.90089 1.22397 0.98038 0.98353 1.02913 0.83385 1.20307 0.81824 0.85971 0.79426 1.90664 1.54834 1.50822 1.51006 1.48129 1.05539 1.26927 1.53059 1.22055 0.89896 0.94156 0.95461 1.21905 0.99311 0.97519 0.98246 1.21608 0.97014 0.97128 0.99849 1.21457 0.96421 0.96820 0.96207 0.92551 1.21944 0.96448 0.96344 0.91245 1.60048 1.26490 1.16103 1.29643 1.21628 0.97498 0.93771 0.94174 1.20998 0.83350 0.86358 0.85745 1.90540 1.67381 1.18223 1.73806 1.42025 1.43315 1.08354 1.29487 1.19019 1.24011 0.94423 1.08563 0.92719 1.26114 0.95127 1.05220 0.94795 1.69805 1.30363 1.37802 1.19443 0.85360 0.79131 0.76174 0.80818 1.18325 1.19894 1.15361 1.21619 0.97359 0.87558 0.93711 0.92256 0.93722 0.91533 0.91686 0.89644 0.84772 0.89334 0.87420 0.89269 0.92759 0.88415 0.92483 0.90241 0.92906 0.90662 0.83452 0.90259 0.87087 0.77439 0.91117 0.89461 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 71.98 0.71 -0.78 16 2 C -0.09 -0.87 6.21 30.59 0.19 -0.68 16 3 C -0.13 -1.80 5.25 -10.80 -0.06 -1.86 16 4 H 0.09 1.78 7.60 -2.38 -0.02 1.76 16 5 C -0.13 -1.30 9.88 30.62 0.30 -1.00 16 6 C -0.20 -2.67 4.85 -11.51 -0.06 -2.72 16 7 H 0.15 1.26 6.57 -2.39 -0.02 1.25 16 8 C 0.53 11.47 7.48 87.66 0.66 12.12 16 9 O -0.59 -18.16 15.67 -3.01 -0.05 -18.21 16 10 N -0.61 -10.49 2.97 -817.98 -2.43 -12.91 16 11 C 0.11 1.07 6.34 86.36 0.55 1.62 16 12 C -0.13 -1.65 6.08 30.67 0.19 -1.47 16 13 C -0.12 -1.95 4.97 30.62 0.15 -1.80 16 14 C -0.09 -1.79 2.56 -10.55 -0.03 -1.82 16 15 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 16 C 0.07 1.47 5.15 86.30 0.44 1.92 16 17 N -0.69 -20.55 6.12 -517.97 -3.17 -23.73 16 18 C 0.06 1.91 6.17 85.56 0.53 2.43 16 19 C 0.45 20.50 7.82 87.66 0.69 21.19 16 20 O -0.61 -34.63 15.78 -3.07 -0.05 -34.68 16 21 N -0.59 -28.14 5.09 -306.98 -1.56 -29.70 16 22 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 23 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.93 -56.61 13.96 21.66 0.30 -56.31 16 26 Si 0.97 38.97 27.74 68.60 1.90 40.87 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.23 -7.77 6.52 99.48 0.65 -7.13 16 30 C 0.12 2.25 5.75 86.52 0.50 2.75 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.50 7.88 -2.39 -0.02 0.48 16 36 H 0.13 0.57 8.03 -2.39 -0.02 0.55 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 0.65 5.51 -2.38 -0.01 0.63 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 1.17 6.62 -2.39 -0.02 1.16 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.35 10.77 6.66 -89.70 -0.60 10.18 16 47 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 49 H 0.39 15.33 5.76 -92.71 -0.53 14.80 16 50 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 51 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.07 1.67 7.00 -2.39 -0.02 1.65 16 Total: -1.00 -83.57 411.55 0.76 -82.81 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.27 Total: 41.03 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.08 Total: 10.84 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.86 Total: -122.65 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.10 Total: -52.89 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -83.57 0.76 -82.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714080103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.939 kcal (2) G-P(sol) polarization free energy of solvation -83.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds