Wall clock time and date at job start Tue Mar 31 2020 20:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.47185 * 2 1 4 4 H 1.09003 * 109.47088 * 302.96709 * 3 2 1 5 5 C 1.52997 * 109.47089 * 182.96193 * 3 2 1 6 6 N 1.46496 * 109.46871 * 184.99797 * 5 3 2 7 7 C 1.34782 * 119.99750 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.55932 * 115.92128 * 62.06129 * 9 7 6 11 11 C 1.58473 * 103.90421 * 160.56771 * 10 9 7 12 12 C 1.55925 * 103.90825 * 0.02562 * 11 10 9 13 13 C 1.55925 * 104.49838 * 70.54494 * 12 11 10 14 14 C 1.54577 * 104.64328 * 288.91459 * 13 12 11 15 15 C 1.56951 * 116.22456 * 181.04794 * 9 7 6 16 16 N 1.46895 * 109.46827 * 62.96467 * 3 2 1 17 17 C 1.46900 * 111.00238 * 65.52263 * 16 3 2 18 18 C 1.50699 * 109.47325 * 182.18106 * 17 16 3 19 19 O 1.21289 * 120.00396 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00058 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00430 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99924 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00771 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99299 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47194 * 60.00391 * 25 23 21 27 27 H 1.48501 * 109.47005 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47397 * 299.99842 * 25 23 21 29 29 H 1.09000 * 109.47068 * 54.77604 * 1 2 3 30 30 H 1.08997 * 109.47070 * 174.77495 * 1 2 3 31 31 H 1.09006 * 109.47155 * 294.77639 * 1 2 3 32 32 H 1.08998 * 109.47677 * 240.00455 * 2 1 3 33 33 H 1.08999 * 109.47216 * 119.99702 * 2 1 3 34 34 H 1.08998 * 109.47515 * 305.00186 * 5 3 2 35 35 H 1.09000 * 109.46676 * 65.00451 * 5 3 2 36 36 H 0.96998 * 120.00085 * 0.02562 * 6 5 3 37 37 H 1.08997 * 110.40304 * 278.81982 * 10 9 7 38 38 H 1.09007 * 110.39884 * 41.24085 * 10 9 7 39 39 H 1.08998 * 110.52786 * 241.56375 * 11 10 9 40 40 H 1.08999 * 111.08201 * 118.71586 * 11 10 9 41 41 H 1.08998 * 115.92245 * 199.42909 * 12 11 10 42 42 H 1.08998 * 110.40318 * 170.12308 * 13 12 11 43 43 H 1.09000 * 110.50106 * 47.75144 * 13 12 11 44 44 H 1.09003 * 110.40207 * 241.20565 * 14 13 12 45 45 H 1.08999 * 110.50419 * 118.84064 * 14 13 12 46 46 H 1.09005 * 112.02933 * 297.12696 * 15 9 7 47 47 H 1.09007 * 112.02491 * 63.64645 * 15 9 7 48 48 H 1.00904 * 111.00189 * 189.47818 * 16 3 2 49 49 H 1.08994 * 109.47257 * 302.18283 * 17 16 3 50 50 H 1.08998 * 109.47086 * 62.18038 * 17 16 3 51 51 H 0.97006 * 120.00173 * 0.02562 * 20 18 17 52 52 H 0.97004 * 119.99736 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6339 1.9716 -0.8622 5 6 3.5682 1.4432 -0.0745 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0061 8 8 6.1698 2.1463 -0.1292 9 6 5.8953 4.4759 0.1302 10 6 5.5682 5.2027 1.4705 11 6 6.6171 6.3893 1.5260 12 6 7.4398 6.2242 0.2118 13 6 6.4486 6.6269 -0.9225 14 6 5.4256 5.4694 -0.9766 15 6 7.4514 4.6630 0.0473 16 7 1.6097 2.1140 1.2336 17 6 2.2439 1.5077 2.4118 18 6 1.7386 2.1858 3.6591 19 8 0.9295 3.0854 3.5751 20 7 2.1859 1.7927 4.8682 21 6 1.7260 2.4092 6.0030 22 1 1.0054 3.2103 5.9282 23 6 2.1867 2.0036 7.2496 24 7 3.0638 1.0293 7.3407 25 14 1.5604 2.8442 8.7957 26 1 0.0873 2.6793 8.8867 27 1 2.2010 2.2308 9.9868 28 1 1.8944 4.2901 8.7430 29 1 -0.3633 0.5927 -0.8395 30 1 -0.3633 -1.0234 -0.0936 31 1 -0.3634 0.4307 0.9331 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0299 36 1 3.4362 3.5500 0.1534 37 1 4.5522 5.5968 1.4509 38 1 5.6969 4.5227 2.3127 39 1 7.2654 6.2860 2.3961 40 1 6.1146 7.3565 1.5404 41 1 8.4116 6.7175 0.1928 42 1 6.9744 6.7142 -1.8733 43 1 5.9491 7.5643 -0.6779 44 1 5.4483 4.9876 -1.9541 45 1 4.4226 5.8358 -0.7578 46 1 7.9681 4.1574 0.8632 47 1 7.8472 4.3696 -0.9251 48 1 1.7982 3.1044 1.1910 49 1 1.9988 0.4464 2.4506 50 1 3.3251 1.6286 2.3450 51 1 2.8334 1.0735 4.9355 52 1 3.3851 0.7458 8.2110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714082029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:46 Heat of formation + Delta-G solvation = -81.303603 kcal Electronic energy + Delta-G solvation = -30628.527380 eV Core-core repulsion = 26627.069673 eV Total energy + Delta-G solvation = -4001.457707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88307 -39.24603 -38.27197 -37.17253 -34.09129 -33.86296 -31.96981 -31.18913 -30.51088 -30.31947 -28.29880 -27.85370 -26.48581 -24.30753 -23.64513 -22.46257 -21.72978 -20.39914 -19.75126 -19.20043 -18.97967 -17.91277 -17.35124 -16.80348 -16.03077 -15.72517 -15.44006 -15.20447 -15.02774 -14.83456 -14.39584 -14.25705 -13.96562 -13.72075 -13.46872 -13.16745 -13.01635 -12.76448 -12.68659 -12.42471 -12.15931 -11.97077 -11.90865 -11.68064 -11.51300 -11.44989 -11.33609 -11.21390 -11.16887 -11.06702 -11.01669 -10.86709 -10.59026 -10.58056 -10.44629 -10.21227 -10.18197 -9.78851 -9.49933 -9.17004 -8.49854 -8.09540 -7.96096 -6.41386 -3.82437 2.53526 3.03737 3.19556 3.25565 3.29586 3.90666 4.07065 4.08997 4.21167 4.29120 4.32378 4.63849 4.74210 4.86486 4.88551 4.90911 5.06846 5.11615 5.14636 5.19600 5.20720 5.26160 5.26802 5.36868 5.42960 5.52237 5.60107 5.61058 5.69040 5.73164 5.76977 5.80883 5.86021 5.87282 5.91628 5.95992 5.99539 6.01587 6.07406 6.08225 6.11418 6.22437 6.30640 6.32040 6.54547 7.13390 7.37117 7.54425 7.54814 8.05723 8.15019 8.61063 9.17739 9.54423 10.05684 10.76185 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008372 B = 0.003628 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.496555 B = 7715.628132 C =10084.540070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.088 0.912 5 C 0.079 3.921 6 N -0.725 5.725 7 C 0.546 3.454 8 O -0.537 6.537 9 C -0.106 4.106 10 C -0.108 4.108 11 C -0.117 4.117 12 C -0.107 4.107 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.093 4.093 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.344 0.656 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 5.754 -17.842 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.034 4.034 4 H 0.106 0.894 5 C -0.046 4.046 6 N -0.377 5.377 7 C 0.332 3.668 8 O -0.414 6.414 9 C -0.109 4.109 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.125 4.125 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.131 4.131 16 N -0.283 5.283 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.164 0.836 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.682 5.238 -17.749 19.359 hybrid contribution 0.718 0.483 0.891 1.242 sum 6.400 5.721 -16.858 18.918 Atomic orbital electron populations 1.21614 0.94601 1.00558 1.03083 1.21502 0.97347 0.94311 1.01978 1.21981 0.90344 0.97207 0.93891 0.89383 1.22203 0.96499 0.83263 1.02664 1.45952 1.07320 1.09649 1.74815 1.19776 0.81894 0.89699 0.75434 1.90694 1.55765 1.46068 1.48834 1.22954 0.98315 0.91260 0.98365 1.23244 0.99531 0.96720 0.95124 1.23250 0.97064 0.97848 0.97319 1.23576 0.97918 0.95820 0.95189 1.22600 0.96522 0.97782 0.98641 1.22584 0.99240 0.95161 0.97490 1.23321 0.92573 0.94893 1.02292 1.60218 1.60830 1.07367 0.99927 1.21772 0.96589 1.00010 0.90506 1.19786 0.86160 0.87071 0.84306 1.90515 1.36751 1.33060 1.86518 1.41857 1.39694 1.33739 1.04628 1.19637 1.23518 1.16693 0.83147 0.88014 1.25253 0.96546 0.96695 0.99344 1.69607 1.30633 1.27952 1.26005 0.85936 0.78974 0.79219 0.80194 1.19883 1.20974 1.19936 0.93219 0.93553 0.91017 0.91839 0.91470 0.90852 0.91226 0.76662 0.90885 0.90961 0.91428 0.91232 0.88167 0.91720 0.91319 0.91639 0.91046 0.90535 0.90960 0.83631 0.89358 0.93550 0.77530 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.71 37.15 0.36 -1.24 16 2 C -0.11 -1.22 5.29 -26.73 -0.14 -1.36 16 3 C 0.08 0.85 2.73 -67.71 -0.18 0.67 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.08 0.93 4.47 -4.05 -0.02 0.91 16 6 N -0.73 -8.40 5.31 -60.30 -0.32 -8.72 16 7 C 0.55 7.34 7.20 -10.98 -0.08 7.26 16 8 O -0.54 -9.18 16.51 5.56 0.09 -9.09 16 9 C -0.11 -1.16 1.26 -150.36 -0.19 -1.35 16 10 C -0.11 -1.19 6.07 -22.14 -0.13 -1.33 16 11 C -0.12 -1.09 6.41 -22.15 -0.14 -1.23 16 12 C -0.11 -0.90 5.14 -85.34 -0.44 -1.34 16 13 C -0.12 -0.90 6.20 -24.34 -0.15 -1.05 16 14 C -0.11 -0.92 5.86 -24.31 -0.14 -1.07 16 15 C -0.09 -0.98 5.68 -22.43 -0.13 -1.11 16 16 N -0.65 -9.42 5.37 -107.99 -0.58 -10.00 16 17 C 0.04 0.74 5.32 -4.98 -0.03 0.72 16 18 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 19 O -0.58 -15.34 15.83 5.55 0.09 -15.25 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.07 0.99 6.69 -51.93 -0.35 0.65 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.06 7.23 -40.82 -0.30 3.76 16 37 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.48 7.82 -51.93 -0.41 0.08 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.56 7.81 -51.93 -0.41 0.15 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.34 5.00 7.24 -39.29 -0.28 4.71 16 49 H 0.09 1.43 6.29 -51.93 -0.33 1.11 16 50 H 0.05 0.77 6.41 -51.93 -0.33 0.44 16 51 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 52 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -32.05 406.98 -9.54 -41.59 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -8.85 Total: 16.80 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.74 Total: 0.61 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.23 Total: -56.80 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.18 Total: -24.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.05 -9.54 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714082029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.712 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds