Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 H 1.09002 * 109.47224 * 305.61713 * 3 2 1 5 5 C 1.53000 * 109.47437 * 65.62227 * 3 2 1 6 6 N 1.46491 * 109.47094 * 174.99982 * 5 3 2 7 7 C 1.34778 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21275 * 120.00220 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99912 * 180.02562 * 7 6 5 10 10 C 1.55924 * 115.91875 * 297.93360 * 9 7 6 11 11 C 1.54589 * 104.64396 * 199.97106 * 10 9 7 12 12 C 1.55931 * 104.64041 * 359.97438 * 11 10 9 13 13 C 1.55920 * 105.23309 * 289.53422 * 12 11 10 14 14 C 1.55920 * 115.92309 * 62.05871 * 9 7 6 15 15 C 1.56949 * 100.65024 * 33.78408 * 12 11 10 16 16 N 1.46901 * 109.46626 * 185.62296 * 3 2 1 17 17 C 1.46898 * 111.00002 * 86.26407 * 16 3 2 18 18 C 1.50708 * 109.47143 * 174.55178 * 17 16 3 19 19 O 1.21289 * 119.99816 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00136 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99995 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00288 * 0.02562 * 21 20 18 23 23 C 1.38959 * 120.00044 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99540 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99917 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47480 * 59.99823 * 25 23 21 27 27 H 1.48504 * 109.46786 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46916 * 299.99417 * 25 23 21 29 29 H 1.08997 * 109.47337 * 174.37998 * 1 2 3 30 30 H 1.09007 * 109.46877 * 54.37983 * 1 2 3 31 31 H 1.09003 * 109.47178 * 294.38249 * 1 2 3 32 32 H 1.08999 * 109.47273 * 119.99598 * 2 1 3 33 33 H 1.08994 * 109.47132 * 239.99870 * 2 1 3 34 34 H 1.08994 * 109.46988 * 295.00034 * 5 3 2 35 35 H 1.09003 * 109.46848 * 54.99742 * 5 3 2 36 36 H 0.97006 * 120.00478 * 359.97438 * 6 5 3 37 37 H 1.08996 * 110.40566 * 318.75813 * 10 9 7 38 38 H 1.08996 * 110.40440 * 81.18012 * 10 9 7 39 39 H 1.08998 * 110.40211 * 241.21542 * 11 10 9 40 40 H 1.08992 * 110.50427 * 118.83737 * 11 10 9 41 41 H 1.09006 * 115.92153 * 160.02978 * 12 11 10 42 42 H 1.09004 * 110.40410 * 189.26037 * 13 12 11 43 43 H 1.09006 * 110.40530 * 311.55957 * 13 12 11 44 44 H 1.09004 * 110.40568 * 278.82065 * 14 9 7 45 45 H 1.09008 * 110.40421 * 41.24051 * 14 9 7 46 46 H 1.09001 * 112.02573 * 189.69535 * 15 12 11 47 47 H 1.09000 * 112.03237 * 63.16985 * 15 12 11 48 48 H 1.00893 * 111.00318 * 322.30468 * 16 3 2 49 49 H 1.09001 * 109.47095 * 294.54855 * 17 16 3 50 50 H 1.09000 * 109.47264 * 54.55633 * 17 16 3 51 51 H 0.97007 * 119.99948 * 0.02562 * 20 18 17 52 52 H 0.97003 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8354 5 6 1.6487 2.1219 1.3139 6 7 2.2380 3.4621 1.3651 7 6 2.0269 4.2505 2.4376 8 8 1.3486 3.8508 3.3600 9 6 2.6327 5.6295 2.4900 10 6 4.1905 5.6909 2.4648 11 6 4.5359 7.0860 3.0341 12 6 3.1541 7.7363 3.3490 13 6 2.5165 8.0371 1.9583 14 6 2.1656 6.6218 1.3817 15 6 2.3297 6.4718 3.7788 16 7 3.5027 1.4447 -0.1357 17 6 3.9003 1.4008 -1.5492 18 6 5.3974 1.5391 -1.6544 19 8 6.0670 1.6625 -0.6507 20 7 5.9920 1.5256 -2.8638 21 6 7.3539 1.6508 -2.9595 22 1 7.9503 1.7599 -2.0657 23 6 7.9669 1.6374 -4.2064 24 7 7.2413 1.5042 -5.2938 25 14 9.8226 1.8073 -4.3367 26 1 10.4745 0.6920 -3.6045 27 1 10.2245 1.7638 -5.7657 28 1 10.2439 3.1020 -3.7438 29 1 -0.3634 -1.0227 -0.1006 30 1 -0.3633 0.5986 -0.8354 31 1 -0.3634 0.4243 0.9360 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 0.5632 2.1998 1.3733 35 1 2.0169 1.5307 2.1523 36 1 2.7809 3.7818 0.6274 37 1 4.6120 4.9082 3.0955 38 1 4.5581 5.5958 1.4431 39 1 5.0732 7.6768 2.2922 40 1 5.1278 6.9910 3.9443 41 1 3.1679 8.5655 4.0564 42 1 1.6173 8.6420 2.0754 43 1 3.2336 8.5448 1.3132 44 1 2.7139 6.4437 0.4565 45 1 1.0929 6.5259 1.2132 46 1 1.2673 6.6924 3.8826 47 1 2.7351 6.0051 4.6765 48 1 3.9148 0.6815 0.3797 49 1 3.5918 0.4501 -1.9841 50 1 3.4213 2.2190 -2.0869 51 1 5.4563 1.4272 -3.6666 52 1 7.6692 1.4944 -6.1643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714082030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = -109.732114 kcal Electronic energy + Delta-G solvation = -30037.104312 eV Core-core repulsion = 26034.413852 eV Total energy + Delta-G solvation = -4002.690460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.68472 -40.27146 -39.65031 -38.35760 -35.95862 -35.04631 -33.61683 -33.15475 -31.33354 -31.04481 -29.27972 -28.59370 -27.59085 -25.81753 -24.44602 -23.15666 -22.79930 -21.82675 -21.07006 -20.46539 -19.91464 -19.76670 -18.19485 -17.69841 -17.21825 -16.75159 -16.62581 -16.32976 -16.28231 -15.92861 -15.80147 -15.69920 -15.22546 -14.99285 -14.58051 -14.37872 -13.92027 -13.75774 -13.57206 -13.52004 -13.43191 -13.30157 -13.19408 -12.91601 -12.69328 -12.58892 -12.53953 -12.40982 -12.20041 -12.12584 -12.09474 -12.00283 -11.87278 -11.79656 -11.60034 -11.47528 -11.26308 -10.89814 -10.75687 -10.31723 -9.98898 -9.98467 -9.31636 -8.44965 -5.92998 1.40324 1.42493 1.52695 1.60385 2.09567 2.27190 2.30624 2.88419 3.22878 3.34101 3.48619 3.55114 3.56775 3.79767 3.90973 4.05768 4.19016 4.20193 4.23220 4.34336 4.35935 4.37893 4.46836 4.50650 4.53882 4.56486 4.56796 4.61041 4.67520 4.75876 4.83094 4.83749 4.92913 5.01944 5.06727 5.13289 5.14160 5.18007 5.20722 5.22239 5.32794 5.36495 5.36911 5.42703 5.44570 5.53872 5.89444 6.10444 6.34915 6.61891 6.63158 7.15543 7.27436 7.60168 8.15960 8.72112 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.003064 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.696025 B = 9137.098779 C =11589.422603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.098 0.902 5 C 0.135 3.865 6 N -0.702 5.702 7 C 0.537 3.463 8 O -0.588 6.588 9 C -0.108 4.108 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.095 4.095 13 C -0.114 4.114 14 C -0.105 4.105 15 C -0.097 4.097 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.345 0.655 49 H 0.067 0.933 50 H 0.108 0.892 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 8.338 9.402 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.116 0.884 5 C 0.010 3.990 6 N -0.352 5.352 7 C 0.324 3.676 8 O -0.469 6.469 9 C -0.111 4.111 10 C -0.144 4.144 11 C -0.154 4.154 12 C -0.113 4.113 13 C -0.151 4.151 14 C -0.142 4.142 15 C -0.135 4.135 16 N -0.304 5.304 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.164 0.836 49 H 0.085 0.915 50 H 0.126 0.874 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.504 8.793 10.509 19.953 hybrid contribution 0.916 -1.316 -1.100 1.945 sum -13.588 7.476 9.409 18.140 Atomic orbital electron populations 1.21749 0.94008 1.02464 1.02336 1.22161 0.97926 0.95918 1.02663 1.21925 0.86999 0.96261 0.97522 0.88370 1.21391 0.97742 0.82530 0.97308 1.45835 1.52464 1.15794 1.21103 1.20207 0.79426 0.86546 0.81409 1.90634 1.41870 1.76052 1.38349 1.22913 0.97013 0.91025 1.00129 1.22527 0.92000 0.98443 1.01477 1.22612 0.97294 0.94465 1.01066 1.23605 0.93876 0.96639 0.97159 1.22979 1.01240 0.95195 0.95686 1.22947 1.00992 0.94021 0.96281 1.23351 1.00245 0.94969 0.94949 1.60058 1.08013 1.52775 1.09533 1.21568 0.91091 1.02880 0.91057 1.20906 0.91124 0.82175 0.83102 1.90509 1.67092 1.56020 1.37083 1.41920 1.07301 1.64577 1.07363 1.19598 0.83710 1.49066 0.93807 0.90441 1.25971 1.04499 0.96478 0.94169 1.69657 1.37867 1.50135 0.98471 0.85053 0.77295 0.78907 0.77500 1.19865 1.19590 1.19716 0.91986 0.91826 0.92432 0.91682 0.91297 0.90379 0.93230 0.75272 0.93330 0.91390 0.90480 0.91337 0.86164 0.90310 0.90459 0.90818 0.91421 0.91088 0.92214 0.83600 0.91506 0.87382 0.77024 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.54 71.98 0.69 -1.46 16 2 C -0.15 -2.59 5.38 30.60 0.16 -2.42 16 3 C 0.08 1.69 2.21 44.92 0.10 1.79 16 4 H 0.10 1.78 7.69 -2.39 -0.02 1.76 16 5 C 0.13 3.11 5.02 86.38 0.43 3.54 16 6 N -0.70 -17.73 5.39 -463.08 -2.50 -20.22 16 7 C 0.54 15.19 7.20 87.66 0.63 15.82 16 8 O -0.59 -20.57 16.51 -3.01 -0.05 -20.62 16 9 C -0.11 -2.47 1.27 -49.53 -0.06 -2.53 16 10 C -0.11 -2.47 5.88 32.15 0.19 -2.28 16 11 C -0.12 -2.11 6.23 32.15 0.20 -1.91 16 12 C -0.09 -1.48 5.14 -7.38 -0.04 -1.51 16 13 C -0.11 -1.65 6.33 32.94 0.21 -1.44 16 14 C -0.10 -1.90 5.98 32.94 0.20 -1.71 16 15 C -0.10 -2.04 5.63 33.35 0.19 -1.85 16 16 N -0.67 -18.60 5.23 -495.55 -2.59 -21.19 16 17 C 0.07 2.01 5.99 85.56 0.51 2.52 16 18 C 0.44 19.66 7.83 87.66 0.69 20.35 16 19 O -0.62 -32.96 15.90 -3.06 -0.05 -33.01 16 20 N -0.57 -28.22 5.29 -306.98 -1.62 -29.84 16 21 C -0.33 -18.41 9.68 84.04 0.81 -17.59 16 22 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -48.63 13.05 21.67 0.28 -48.35 16 25 Si 0.99 42.24 29.55 68.60 2.03 44.26 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.85 6.98 -2.39 -0.02 0.83 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.24 7.52 -2.39 -0.02 1.22 16 34 H 0.08 1.69 6.96 -2.39 -0.02 1.67 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 10.17 8.14 -92.70 -0.75 9.42 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.65 7.87 -2.39 -0.02 1.63 16 39 H 0.08 1.27 7.87 -2.39 -0.02 1.26 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.08 1.03 7.88 -2.38 -0.02 1.01 16 44 H 0.07 1.32 7.87 -2.39 -0.02 1.30 16 45 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.35 10.47 8.36 -89.70 -0.75 9.72 16 49 H 0.07 1.78 7.56 -2.39 -0.02 1.76 16 50 H 0.11 2.84 7.92 -2.39 -0.02 2.82 16 51 H 0.40 18.45 7.90 -92.70 -0.73 17.72 16 52 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -68.66 412.62 -0.42 -69.08 By element: Atomic # 1 Polarization: 52.02 SS G_CDS: -1.30 Total: 50.72 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.38 Total: 9.18 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.42 Total: -119.61 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.10 Total: -53.64 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -68.66 -0.42 -69.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714082030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.649 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds