Wall clock time and date at job start Tue Mar 31 2020 20:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 H 1.08999 * 109.46879 * 55.00006 * 3 2 1 5 5 C 1.53002 * 109.47247 * 174.99893 * 3 2 1 6 6 N 1.46497 * 109.47275 * 174.99734 * 5 3 2 7 7 C 1.34773 * 120.00270 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99727 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00002 * 180.02562 * 7 6 5 10 10 C 1.53001 * 110.43364 * 174.80459 * 9 7 6 11 11 C 1.54888 * 110.75908 * 295.46312 * 10 9 7 12 12 C 1.54264 * 104.19928 * 203.74381 * 11 10 9 13 13 C 1.53869 * 106.63900 * 23.58303 * 12 11 10 14 14 C 1.54372 * 106.54998 * 0.04170 * 13 12 11 15 15 C 1.54633 * 110.60110 * 52.18889 * 9 7 6 16 16 C 1.54477 * 101.76336 * 266.06368 * 15 9 7 17 17 N 1.46756 * 105.47326 * 334.58181 * 16 15 9 18 18 C 1.34419 * 111.30179 * 17.01910 * 17 16 15 19 19 O 1.21287 * 124.93790 * 179.55936 * 18 17 16 20 20 N 1.46495 * 109.47088 * 295.00094 * 3 2 1 21 21 C 1.36937 * 119.99856 * 84.99633 * 20 3 2 22 22 H 1.07999 * 120.00119 * 0.02562 * 21 20 3 23 23 C 1.38819 * 119.99721 * 179.97438 * 21 20 3 24 24 N 1.31616 * 120.00401 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99610 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47440 * 59.99941 * 25 23 21 27 27 H 1.48496 * 109.47013 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47054 * 299.99711 * 25 23 21 29 29 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46517 * 299.99921 * 1 2 3 31 31 H 1.08995 * 109.47141 * 59.99934 * 1 2 3 32 32 H 1.09002 * 109.47258 * 240.00098 * 2 1 3 33 33 H 1.09007 * 109.47342 * 120.00405 * 2 1 3 34 34 H 1.09005 * 109.46500 * 55.00098 * 5 3 2 35 35 H 1.08995 * 109.47082 * 295.00694 * 5 3 2 36 36 H 0.97006 * 119.99445 * 0.02562 * 6 5 3 37 37 H 1.08999 * 110.81602 * 58.80298 * 10 9 7 38 38 H 1.09003 * 110.48454 * 85.06404 * 11 10 9 39 39 H 1.09001 * 110.48556 * 322.42157 * 11 10 9 40 40 H 1.08998 * 110.03394 * 142.89206 * 12 11 10 41 41 H 1.09003 * 110.03377 * 264.27932 * 12 11 10 42 42 H 1.09003 * 110.03674 * 119.31070 * 13 12 11 43 43 H 1.09003 * 110.03818 * 240.73936 * 13 12 11 44 44 H 1.09001 * 110.46774 * 217.68826 * 14 13 12 45 45 H 1.08998 * 110.51363 * 95.03716 * 14 13 12 46 46 H 1.09000 * 110.96742 * 24.18189 * 15 9 7 47 47 H 1.09005 * 110.97116 * 147.94011 * 15 9 7 48 48 H 1.09001 * 110.24503 * 215.57981 * 16 15 9 49 49 H 1.09000 * 110.24316 * 93.58333 * 16 15 9 50 50 H 0.97007 * 124.34909 * 196.99675 * 17 16 15 51 51 H 0.97005 * 120.00304 * 265.00262 * 20 3 2 52 52 H 0.96997 * 120.00276 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3859 3.0628 0.0858 8 8 6.1636 2.1480 0.2564 9 6 5.8983 4.4746 -0.0369 10 6 7.4072 4.5188 0.2129 11 6 7.7346 4.1084 1.6701 12 6 9.1032 4.7631 1.9492 13 6 9.2307 5.9491 0.9772 14 6 7.9331 5.9740 0.1414 15 6 5.1591 5.4093 0.9484 16 6 4.0233 5.9666 0.0619 17 7 4.5213 5.8756 -1.3155 18 6 5.5708 5.0401 -1.4012 19 8 6.1678 4.7773 -2.4238 20 7 1.6525 2.0975 -1.2518 21 6 0.4157 2.6734 -1.3687 22 1 -0.2739 2.6452 -0.5380 23 6 0.0487 3.2946 -2.5547 24 7 0.8896 3.3303 -3.5666 25 14 -1.6383 4.0809 -2.7140 26 1 -1.7865 5.1463 -1.6902 27 1 -1.7826 4.6729 -4.0682 28 1 -2.6867 3.0490 -2.5100 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9954 0.8310 -0.6660 35 1 3.8499 1.0375 1.0960 36 1 3.4411 3.5483 -0.1309 37 1 7.9360 3.8817 -0.4960 38 1 7.8062 3.0239 1.7540 39 1 6.9797 4.4958 2.3543 40 1 9.1442 5.1182 2.9789 41 1 9.9039 4.0456 1.7698 42 1 9.3336 6.8798 1.5352 43 1 10.0927 5.8068 0.3255 44 1 8.1495 6.2510 -0.8904 45 1 7.2102 6.6627 0.5787 46 1 4.7562 4.8476 1.7912 47 1 5.8139 6.2099 1.2925 48 1 3.8177 7.0052 0.3209 49 1 3.1233 5.3628 0.1783 50 1 4.1417 6.3565 -2.0677 51 1 2.2720 2.1231 -1.9978 52 1 0.6333 3.7646 -4.3951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714083389.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:08 Heat of formation + Delta-G solvation = -99.546668 kcal Electronic energy + Delta-G solvation = -31841.403190 eV Core-core repulsion = 27839.154404 eV Total energy + Delta-G solvation = -4002.248785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.63058 -40.04195 -38.86666 -38.15134 -37.42836 -35.21979 -34.13580 -33.20178 -31.49468 -29.75089 -29.64002 -29.51310 -27.39403 -25.61167 -24.35856 -23.62824 -22.64400 -21.66471 -21.35727 -20.97811 -19.93748 -19.19505 -18.61852 -18.25752 -17.32098 -16.99385 -16.75287 -16.37926 -16.15264 -15.84003 -15.62275 -15.31605 -15.18065 -14.96969 -14.83814 -14.63679 -14.55289 -14.14646 -14.04429 -13.80649 -13.59515 -12.97369 -12.86527 -12.78985 -12.73283 -12.58196 -12.37823 -12.14811 -12.12616 -12.04987 -11.99852 -11.90267 -11.85252 -11.64070 -11.49792 -11.32266 -11.16403 -11.07014 -10.89026 -10.69179 -10.11799 -10.07828 -8.97612 -7.84705 -5.13507 1.18882 1.50649 1.53257 1.58329 1.58537 2.14756 2.35983 2.60793 3.21175 3.26479 3.45454 3.49874 3.72856 3.83170 3.88885 3.93041 3.93648 3.95072 4.17619 4.36333 4.41672 4.47649 4.54816 4.55913 4.62194 4.69279 4.70284 4.72749 4.77486 4.83980 4.86406 4.89652 4.96725 5.08783 5.09079 5.12613 5.16620 5.21282 5.27052 5.36902 5.44210 5.46531 5.55876 5.57625 5.62567 5.72897 5.76866 5.92036 6.32415 6.48261 7.08883 7.14884 7.40400 8.11683 8.37098 9.37272 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003797 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.847723 B = 7372.942433 C = 8571.358044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.707 5.707 7 C 0.527 3.473 8 O -0.563 6.563 9 C -0.101 4.101 10 C -0.058 4.058 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.117 4.117 14 C -0.122 4.122 15 C -0.119 4.119 16 C 0.089 3.911 17 N -0.715 5.715 18 C 0.525 3.475 19 O -0.574 6.574 20 N -0.729 5.729 21 C -0.216 4.216 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.958 3.042 26 H -0.272 1.272 27 H -0.309 1.309 28 H -0.285 1.285 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.409 0.591 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.072 0.928 50 H 0.417 0.583 51 H 0.367 0.633 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 7.859 17.089 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.086 0.914 5 C -0.006 4.006 6 N -0.360 5.360 7 C 0.313 3.687 8 O -0.442 6.442 9 C -0.108 4.108 10 C -0.077 4.077 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.156 4.156 16 C -0.035 4.035 17 N -0.368 5.368 18 C 0.310 3.690 19 O -0.453 6.453 20 N -0.369 5.369 21 C -0.348 4.348 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.198 1.198 27 H -0.236 1.236 28 H -0.212 1.212 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.131 0.869 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.090 0.910 50 H 0.256 0.744 51 H 0.199 0.801 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.178 7.077 16.849 20.918 hybrid contribution -1.255 0.348 -2.057 2.435 sum 8.922 7.425 14.792 18.803 Atomic orbital electron populations 1.21686 0.95742 1.00559 1.01923 1.22000 0.96797 0.97419 1.00891 1.20733 0.90496 0.93365 0.89714 0.91424 1.21659 0.94784 0.82585 1.01586 1.46095 1.06957 1.10891 1.72037 1.20170 0.82368 0.90096 0.76113 1.90643 1.56510 1.46546 1.50452 1.21607 0.99976 0.93388 0.95825 1.21710 0.89061 0.98123 0.98815 1.22399 0.98286 1.00394 0.93811 1.22117 0.96267 0.97024 1.00334 1.22108 0.96455 0.99419 0.97516 1.22599 0.98650 0.94753 0.99961 1.23098 0.96654 0.99051 0.96806 1.22501 0.96710 1.05165 0.79079 1.46229 1.31707 1.46089 1.12784 1.20665 0.80102 0.78627 0.89589 1.90720 1.55902 1.62804 1.35865 1.42613 1.15850 1.66159 1.12240 1.19465 0.92367 1.25345 0.97587 0.89819 1.25366 1.00719 1.03518 0.96582 1.69836 1.36843 1.50831 1.04297 0.85441 0.81080 0.78611 0.75962 1.19802 1.23581 1.21210 0.93058 0.92722 0.93399 0.94219 0.90459 0.94102 0.89266 0.75289 0.93305 0.92810 0.89522 0.89567 0.92576 0.89406 0.92488 0.93524 0.88694 0.86879 0.85131 0.85315 0.91019 0.74350 0.80122 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.18 71.98 0.66 -3.96 16 2 C -0.13 -4.16 5.61 30.59 0.17 -3.99 16 3 C 0.17 5.69 2.59 44.99 0.12 5.81 16 4 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.71 -23.06 5.21 -463.07 -2.41 -25.47 16 7 C 0.53 17.76 6.23 87.66 0.55 18.31 16 8 O -0.56 -22.13 14.78 -3.03 -0.04 -22.18 16 9 C -0.10 -2.77 0.41 -52.94 -0.02 -2.79 16 10 C -0.06 -1.51 1.79 -9.50 -0.02 -1.53 16 11 C -0.11 -2.35 5.50 31.67 0.17 -2.18 16 12 C -0.12 -1.97 6.80 31.32 0.21 -1.76 16 13 C -0.12 -1.88 6.81 31.35 0.21 -1.67 16 14 C -0.12 -2.47 5.50 31.71 0.17 -2.30 16 15 C -0.12 -1.94 4.48 31.65 0.14 -1.80 16 16 C 0.09 1.58 7.03 86.83 0.61 2.19 16 17 N -0.71 -18.82 6.24 -459.83 -2.87 -21.69 16 18 C 0.53 17.68 6.49 87.89 0.57 18.26 16 19 O -0.57 -25.37 17.87 -3.05 -0.05 -25.42 16 20 N -0.73 -32.44 4.51 -322.94 -1.46 -33.90 16 21 C -0.22 -10.44 7.75 84.04 0.65 -9.79 16 22 H 0.08 3.82 7.32 -2.91 -0.02 3.80 16 23 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 24 N -0.97 -56.41 13.06 21.65 0.28 -56.13 16 25 Si 0.96 43.07 29.55 68.60 2.03 45.10 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.92 5.99 -2.39 -0.01 1.91 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.41 13.17 5.57 -92.70 -0.52 12.65 16 37 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.05 1.42 7.18 -2.39 -0.02 1.40 16 39 H 0.09 1.43 6.84 -2.39 -0.02 1.41 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.42 5.63 -2.39 -0.01 1.41 16 46 H 0.11 1.53 7.87 -2.39 -0.02 1.51 16 47 H 0.13 1.39 5.57 -2.38 -0.01 1.37 16 48 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 1.46 6.64 -2.39 -0.02 1.45 16 50 H 0.42 10.94 8.96 -92.70 -0.83 10.11 16 51 H 0.37 19.03 7.80 -92.70 -0.72 18.31 16 52 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -72.38 396.99 -0.52 -72.90 By element: Atomic # 1 Polarization: 53.98 SS G_CDS: -1.12 Total: 52.86 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.12 Total: 13.94 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -6.45 Total: -137.19 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.10 Total: -47.60 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.38 -0.52 -72.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714083389.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.648 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds