Wall clock time and date at job start Tue Mar 31 2020 20:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47580 * 2 1 4 4 H 1.09005 * 109.47263 * 305.00024 * 3 2 1 5 5 C 1.53000 * 109.47283 * 185.00119 * 3 2 1 6 6 N 1.46508 * 109.46810 * 184.99913 * 5 3 2 7 7 C 1.34776 * 119.99362 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00537 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99523 * 179.97438 * 7 6 5 10 10 C 1.53000 * 110.43529 * 179.35289 * 9 7 6 11 11 C 1.54890 * 110.75732 * 179.97438 * 10 9 7 12 12 C 1.54264 * 104.19433 * 203.74520 * 11 10 9 13 13 C 1.53875 * 106.60219 * 23.61291 * 12 11 10 14 14 C 1.54269 * 106.59543 * 359.97438 * 13 12 11 15 15 C 1.54622 * 110.48933 * 301.89879 * 9 7 6 16 16 C 1.54480 * 101.76747 * 93.88021 * 15 9 7 17 17 N 1.46768 * 105.46997 * 25.41341 * 16 15 9 18 18 C 1.34418 * 111.30316 * 342.98652 * 17 16 15 19 19 O 1.21277 * 124.94078 * 180.44160 * 18 17 16 20 20 N 1.46498 * 109.47155 * 64.99655 * 3 2 1 21 21 C 1.36938 * 120.00535 * 275.00648 * 20 3 2 22 22 H 1.08001 * 119.99715 * 359.97438 * 21 20 3 23 23 C 1.38807 * 120.00273 * 179.97438 * 21 20 3 24 24 N 1.31619 * 119.99988 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00221 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47188 * 60.00000 * 25 23 21 27 27 H 1.48501 * 109.47336 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47190 * 299.99781 * 25 23 21 29 29 H 1.09003 * 109.46754 * 300.00004 * 1 2 3 30 30 H 1.08997 * 109.46680 * 59.99689 * 1 2 3 31 31 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46754 * 239.99996 * 2 1 3 33 33 H 1.09000 * 109.47122 * 120.00557 * 2 1 3 34 34 H 1.08996 * 109.46833 * 304.99702 * 5 3 2 35 35 H 1.09001 * 109.47159 * 65.00331 * 5 3 2 36 36 H 0.96994 * 120.00036 * 359.97438 * 6 5 3 37 37 H 1.09000 * 110.67188 * 303.44388 * 10 9 7 38 38 H 1.08999 * 110.48620 * 322.42432 * 11 10 9 39 39 H 1.08997 * 110.48296 * 85.06913 * 11 10 9 40 40 H 1.08999 * 110.03546 * 264.32838 * 12 11 10 41 41 H 1.09003 * 110.03461 * 142.89633 * 12 11 10 42 42 H 1.08998 * 110.03494 * 240.71524 * 13 12 11 43 43 H 1.08994 * 110.07431 * 119.30381 * 13 12 11 44 44 H 1.09006 * 110.48331 * 217.71272 * 14 13 12 45 45 H 1.08992 * 110.60206 * 95.12445 * 14 13 12 46 46 H 1.09000 * 110.97101 * 211.99565 * 15 9 7 47 47 H 1.08999 * 110.97009 * 335.72733 * 15 9 7 48 48 H 1.09000 * 110.25025 * 144.41588 * 16 15 9 49 49 H 1.09000 * 110.24550 * 266.32890 * 16 15 9 50 50 H 0.97001 * 124.34364 * 162.98523 * 17 16 15 51 51 H 0.97010 * 119.99837 * 95.00207 * 20 3 2 52 52 H 0.97008 * 120.00172 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8418 5 6 3.5650 1.4442 -0.1258 6 7 4.0632 2.8167 -0.0060 7 6 5.3859 3.0627 -0.0859 8 8 6.1636 2.1480 -0.2574 9 6 5.8984 4.4746 0.0367 10 6 7.4245 4.5000 -0.0692 11 6 7.9594 5.9483 0.0553 12 6 9.3285 5.9082 -0.6544 13 6 9.2800 4.7250 -1.6369 14 6 7.8832 4.0869 -1.4896 15 6 5.2655 5.3763 -1.0482 16 6 4.0540 5.9708 -0.2964 17 7 4.4159 5.9276 1.1253 18 6 5.4453 5.0908 1.3420 19 8 5.9385 4.8625 2.4261 20 7 1.6526 2.0974 1.2518 21 6 0.4158 2.6735 1.3688 22 1 -0.2739 2.6452 0.5381 23 6 0.0484 3.2936 2.5551 24 7 0.8886 3.3276 3.5676 25 14 -1.6385 4.0800 2.7145 26 1 -2.6869 3.0485 2.5094 27 1 -1.7836 4.6699 4.0696 28 1 -1.7862 5.1463 1.6916 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9955 0.8310 0.6659 35 1 3.8500 1.0376 -1.0961 36 1 3.4412 3.5482 0.1308 37 1 7.8734 3.8529 0.6843 38 1 7.2898 6.6467 -0.4467 39 1 8.0809 6.2213 1.1035 40 1 10.1232 5.7549 0.0757 41 1 9.4948 6.8383 -1.1980 42 1 10.0511 3.9974 -1.3836 43 1 9.4229 5.0801 -2.6575 44 1 7.9492 3.0018 -1.5691 45 1 7.1996 4.4826 -2.2406 46 1 5.9570 6.1608 -1.3556 47 1 4.9419 4.7862 -1.9057 48 1 3.8829 7.0002 -0.6110 49 1 3.1641 5.3683 -0.4789 50 1 3.9695 6.4374 1.8193 51 1 2.2721 2.1231 1.9978 52 1 1.7648 2.9196 3.4847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714083391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:15 Heat of formation + Delta-G solvation = -77.294291 kcal Electronic energy + Delta-G solvation = -31897.201131 eV Core-core repulsion = 27895.917281 eV Total energy + Delta-G solvation = -4001.283850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54166 -38.75754 -37.88733 -36.78641 -36.27201 -33.84258 -32.64750 -32.21657 -29.65923 -28.84997 -28.75111 -28.01820 -26.30943 -23.78149 -23.06024 -22.54040 -21.54781 -20.43481 -20.27543 -20.05842 -18.79805 -17.66282 -17.39724 -17.20932 -16.14463 -15.82963 -15.34888 -15.17518 -15.02446 -14.57414 -14.36592 -14.15631 -13.94053 -13.74718 -13.65531 -13.45070 -13.28777 -13.21424 -12.78321 -12.68074 -12.09357 -12.01422 -11.72490 -11.67299 -11.30997 -11.16730 -11.12126 -11.10162 -11.02199 -10.84920 -10.63789 -10.52054 -10.46663 -10.39834 -10.16141 -9.93237 -9.86042 -9.46285 -9.24906 -9.08109 -8.99738 -8.78119 -7.14095 -6.14718 -3.17394 2.44790 2.78075 3.29257 3.42630 3.44002 3.47609 3.65397 4.16860 4.21074 4.39164 4.58451 4.61316 4.70023 4.75022 4.76078 5.03926 5.25252 5.28619 5.31909 5.33033 5.39181 5.46902 5.49341 5.50956 5.58023 5.58583 5.69830 5.74160 5.79303 5.84967 5.85770 5.86762 5.92432 6.01730 6.04326 6.15979 6.27262 6.32369 6.38754 6.43386 6.46858 6.51691 6.75093 6.78528 6.90946 7.02797 7.17826 7.73458 7.74039 8.26274 8.38140 8.67827 9.12658 9.99729 10.14993 11.31450 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.003801 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.220964 B = 7364.712266 C = 8557.238968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.111 3.889 6 N -0.712 5.712 7 C 0.533 3.467 8 O -0.532 6.532 9 C -0.105 4.105 10 C -0.053 4.053 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.124 4.124 14 C -0.117 4.117 15 C -0.127 4.127 16 C 0.094 3.906 17 N -0.723 5.723 18 C 0.535 3.465 19 O -0.513 6.513 20 N -0.732 5.732 21 C -0.331 4.331 22 H 0.067 0.933 23 C -0.041 4.041 24 N -0.937 5.937 25 Si 1.075 2.925 26 H -0.296 1.296 27 H -0.286 1.286 28 H -0.296 1.296 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.418 0.582 51 H 0.368 0.632 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 6.230 -13.776 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.072 0.928 5 C -0.013 4.013 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.409 6.409 9 C -0.112 4.112 10 C -0.072 4.072 11 C -0.164 4.164 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.154 4.154 15 C -0.165 4.165 16 C -0.031 4.031 17 N -0.379 5.379 18 C 0.318 3.682 19 O -0.387 6.387 20 N -0.376 5.376 21 C -0.462 4.462 22 H 0.085 0.915 23 C -0.240 4.240 24 N -0.582 5.582 25 Si 0.906 3.094 26 H -0.223 1.223 27 H -0.212 1.212 28 H -0.224 1.224 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.258 0.742 51 H 0.201 0.799 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.212 6.228 -12.536 17.327 hybrid contribution 0.425 -0.405 -0.458 0.745 sum 10.637 5.822 -12.994 17.773 Atomic orbital electron populations 1.21760 0.95525 0.99628 1.03333 1.22059 0.97148 0.98206 0.99999 1.20493 0.89649 0.92856 0.91100 0.92799 1.21750 0.95787 0.82422 1.01327 1.46088 1.06907 1.10995 1.72419 1.19666 0.82639 0.89108 0.76909 1.90659 1.55868 1.45300 1.49082 1.21627 0.99017 0.94400 0.96203 1.21727 0.89174 0.97176 0.99132 1.22569 0.96687 0.96166 1.01022 1.22088 0.97249 0.98354 0.98198 1.22127 0.97655 0.97318 0.99036 1.22441 0.95800 1.01819 0.95361 1.22908 0.97082 0.99233 0.97280 1.22191 0.97741 1.02693 0.80508 1.46119 1.35013 1.46662 1.10141 1.20189 0.79792 0.78830 0.89358 1.90770 1.58465 1.62034 1.27472 1.42482 1.16840 1.67030 1.11262 1.19961 0.92611 1.32684 1.00946 0.91512 1.25679 1.05562 1.00443 0.92283 1.70875 1.08367 1.46988 1.31965 0.83311 0.74461 0.75867 0.75764 1.22304 1.21155 1.22376 0.89597 0.94118 0.94862 0.93760 0.92683 0.91829 0.91488 0.75493 0.89043 0.91217 0.91336 0.91872 0.91952 0.91882 0.91996 0.90208 0.91732 0.88138 0.88728 0.89382 0.90327 0.74210 0.79886 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.17 3.09 2.59 -67.93 -0.18 2.91 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 6 N -0.71 -11.76 5.19 -60.29 -0.31 -12.08 16 7 C 0.53 8.84 6.30 -10.98 -0.07 8.77 16 8 O -0.53 -10.04 14.69 5.56 0.08 -9.96 16 9 C -0.11 -1.45 0.41 -155.67 -0.06 -1.51 16 10 C -0.05 -0.69 1.81 -88.64 -0.16 -0.85 16 11 C -0.13 -1.37 5.43 -25.07 -0.14 -1.51 16 12 C -0.12 -1.11 6.80 -25.61 -0.17 -1.28 16 13 C -0.12 -1.15 6.80 -25.61 -0.17 -1.32 16 14 C -0.12 -1.30 5.50 -25.08 -0.14 -1.44 16 15 C -0.13 -1.23 4.50 -25.10 -0.11 -1.34 16 16 C 0.09 0.94 6.98 -3.12 -0.02 0.91 16 17 N -0.72 -9.58 6.24 -59.20 -0.37 -9.95 16 18 C 0.53 8.68 6.21 -10.86 -0.07 8.62 16 19 O -0.51 -10.57 17.87 5.56 0.10 -10.47 16 20 N -0.73 -16.47 4.50 -53.43 -0.24 -16.71 16 21 C -0.33 -8.28 7.75 -15.06 -0.12 -8.40 16 22 H 0.07 1.65 7.32 -52.49 -0.38 1.26 16 23 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 24 N -0.94 -27.58 13.70 55.49 0.76 -26.82 16 25 Si 1.07 24.42 29.92 -169.99 -5.09 19.33 16 26 H -0.30 -6.51 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.30 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.41 6.81 5.69 -40.82 -0.23 6.58 16 37 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 38 H 0.07 0.65 5.78 -51.93 -0.30 0.35 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.05 7.14 -51.93 -0.37 0.67 16 45 H 0.06 0.64 6.68 -51.93 -0.35 0.29 16 46 H 0.10 0.78 5.64 -51.93 -0.29 0.49 16 47 H 0.09 0.83 7.86 -51.93 -0.41 0.43 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.86 6.86 -51.93 -0.36 0.51 16 50 H 0.42 5.44 8.96 -40.82 -0.37 5.07 16 51 H 0.37 9.10 6.63 -40.82 -0.27 8.83 16 52 H 0.26 7.63 6.78 -40.82 -0.28 7.36 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -31.99 395.23 -9.07 -41.06 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -8.62 Total: 20.10 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.34 Total: -0.46 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.16 Total: -65.57 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.18 Total: -20.43 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.09 Total: 19.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.99 -9.07 -41.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714083391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.233 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds