Wall clock time and date at job start Tue Mar 31 2020 20:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47580 * 2 1 4 4 H 1.09005 * 109.47263 * 305.00024 * 3 2 1 5 5 C 1.53000 * 109.47283 * 185.00119 * 3 2 1 6 6 N 1.46508 * 109.46810 * 184.99913 * 5 3 2 7 7 C 1.34776 * 119.99362 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00537 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99523 * 179.97438 * 7 6 5 10 10 C 1.53000 * 110.43529 * 179.35289 * 9 7 6 11 11 C 1.54890 * 110.75732 * 179.97438 * 10 9 7 12 12 C 1.54264 * 104.19433 * 203.74520 * 11 10 9 13 13 C 1.53875 * 106.60219 * 23.61291 * 12 11 10 14 14 C 1.54269 * 106.59543 * 359.97438 * 13 12 11 15 15 C 1.54622 * 110.48933 * 301.89879 * 9 7 6 16 16 C 1.54480 * 101.76747 * 93.88021 * 15 9 7 17 17 N 1.46768 * 105.46997 * 25.41341 * 16 15 9 18 18 C 1.34418 * 111.30316 * 342.98652 * 17 16 15 19 19 O 1.21277 * 124.94078 * 180.44160 * 18 17 16 20 20 N 1.46498 * 109.47155 * 64.99655 * 3 2 1 21 21 C 1.36938 * 120.00535 * 275.00648 * 20 3 2 22 22 H 1.08001 * 119.99715 * 359.97438 * 21 20 3 23 23 C 1.38807 * 120.00273 * 179.97438 * 21 20 3 24 24 N 1.31619 * 119.99988 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00221 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47188 * 60.00000 * 25 23 21 27 27 H 1.48501 * 109.47336 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47190 * 299.99781 * 25 23 21 29 29 H 1.09003 * 109.46754 * 300.00004 * 1 2 3 30 30 H 1.08997 * 109.46680 * 59.99689 * 1 2 3 31 31 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46754 * 239.99996 * 2 1 3 33 33 H 1.09000 * 109.47122 * 120.00557 * 2 1 3 34 34 H 1.08996 * 109.46833 * 304.99702 * 5 3 2 35 35 H 1.09001 * 109.47159 * 65.00331 * 5 3 2 36 36 H 0.96994 * 120.00036 * 359.97438 * 6 5 3 37 37 H 1.09000 * 110.67188 * 303.44388 * 10 9 7 38 38 H 1.08999 * 110.48620 * 322.42432 * 11 10 9 39 39 H 1.08997 * 110.48296 * 85.06913 * 11 10 9 40 40 H 1.08999 * 110.03546 * 264.32838 * 12 11 10 41 41 H 1.09003 * 110.03461 * 142.89633 * 12 11 10 42 42 H 1.08998 * 110.03494 * 240.71524 * 13 12 11 43 43 H 1.08994 * 110.07431 * 119.30381 * 13 12 11 44 44 H 1.09006 * 110.48331 * 217.71272 * 14 13 12 45 45 H 1.08992 * 110.60206 * 95.12445 * 14 13 12 46 46 H 1.09000 * 110.97101 * 211.99565 * 15 9 7 47 47 H 1.08999 * 110.97009 * 335.72733 * 15 9 7 48 48 H 1.09000 * 110.25025 * 144.41588 * 16 15 9 49 49 H 1.09000 * 110.24550 * 266.32890 * 16 15 9 50 50 H 0.97001 * 124.34364 * 162.98523 * 17 16 15 51 51 H 0.97010 * 119.99837 * 95.00207 * 20 3 2 52 52 H 0.97008 * 120.00172 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8418 5 6 3.5650 1.4442 -0.1258 6 7 4.0632 2.8167 -0.0060 7 6 5.3859 3.0627 -0.0859 8 8 6.1636 2.1480 -0.2574 9 6 5.8984 4.4746 0.0367 10 6 7.4245 4.5000 -0.0692 11 6 7.9594 5.9483 0.0553 12 6 9.3285 5.9082 -0.6544 13 6 9.2800 4.7250 -1.6369 14 6 7.8832 4.0869 -1.4896 15 6 5.2655 5.3763 -1.0482 16 6 4.0540 5.9708 -0.2964 17 7 4.4159 5.9276 1.1253 18 6 5.4453 5.0908 1.3420 19 8 5.9385 4.8625 2.4261 20 7 1.6526 2.0974 1.2518 21 6 0.4158 2.6735 1.3688 22 1 -0.2739 2.6452 0.5381 23 6 0.0484 3.2936 2.5551 24 7 0.8886 3.3276 3.5676 25 14 -1.6385 4.0800 2.7145 26 1 -2.6869 3.0485 2.5094 27 1 -1.7836 4.6699 4.0696 28 1 -1.7862 5.1463 1.6916 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9955 0.8310 0.6659 35 1 3.8500 1.0376 -1.0961 36 1 3.4412 3.5482 0.1308 37 1 7.8734 3.8529 0.6843 38 1 7.2898 6.6467 -0.4467 39 1 8.0809 6.2213 1.1035 40 1 10.1232 5.7549 0.0757 41 1 9.4948 6.8383 -1.1980 42 1 10.0511 3.9974 -1.3836 43 1 9.4229 5.0801 -2.6575 44 1 7.9492 3.0018 -1.5691 45 1 7.1996 4.4826 -2.2406 46 1 5.9570 6.1608 -1.3556 47 1 4.9419 4.7862 -1.9057 48 1 3.8829 7.0002 -0.6110 49 1 3.1641 5.3683 -0.4789 50 1 3.9695 6.4374 1.8193 51 1 2.2721 2.1231 1.9978 52 1 1.7648 2.9196 3.4847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714083391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:14 Heat of formation + Delta-G solvation = -100.594783 kcal Electronic energy + Delta-G solvation = -31898.211517 eV Core-core repulsion = 27895.917281 eV Total energy + Delta-G solvation = -4002.294235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.69119 -40.12172 -38.94004 -38.29047 -37.47581 -35.42867 -34.32882 -33.25415 -31.35350 -29.78816 -29.62474 -29.51128 -27.40123 -25.52001 -24.46523 -23.67662 -22.72537 -21.81632 -21.42005 -21.00509 -19.98233 -19.40617 -18.74597 -18.34972 -17.40184 -16.88795 -16.73955 -16.63607 -16.24743 -15.89263 -15.62630 -15.47485 -15.30799 -15.08622 -14.90176 -14.71653 -14.67998 -14.20944 -14.11456 -13.78314 -13.57879 -13.22696 -12.91008 -12.75329 -12.61846 -12.56757 -12.18485 -12.11960 -12.09446 -12.03011 -12.01211 -11.91209 -11.83725 -11.58295 -11.53719 -11.19861 -11.19105 -11.11710 -10.90490 -10.74010 -10.18624 -10.16757 -9.08827 -8.25992 -5.22619 1.14343 1.50156 1.61190 1.69687 1.85233 2.05923 2.29514 2.75266 3.14772 3.22456 3.40713 3.50038 3.66611 3.72241 3.78580 3.81917 3.89005 3.90752 4.13424 4.24311 4.36597 4.38256 4.46145 4.51684 4.58285 4.61830 4.66323 4.67678 4.72943 4.74655 4.80769 4.85233 4.92554 4.99032 5.03272 5.04944 5.12628 5.14202 5.23833 5.31834 5.37318 5.42484 5.45953 5.54709 5.64061 5.71554 5.72963 5.86673 6.38195 6.54564 7.00558 7.08383 7.12401 8.02426 8.17987 9.22720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.003801 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.220964 B = 7364.712266 C = 8557.238968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.171 3.829 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.710 5.710 7 C 0.527 3.473 8 O -0.560 6.560 9 C -0.101 4.101 10 C -0.057 4.057 11 C -0.122 4.122 12 C -0.117 4.117 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.117 4.117 16 C 0.089 3.911 17 N -0.716 5.716 18 C 0.524 3.476 19 O -0.573 6.573 20 N -0.740 5.740 21 C -0.304 4.304 22 H 0.076 0.924 23 C -0.103 4.103 24 N -0.978 5.978 25 Si 1.119 2.881 26 H -0.284 1.284 27 H -0.305 1.305 28 H -0.271 1.271 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.112 0.888 48 H 0.130 0.870 49 H 0.072 0.928 50 H 0.417 0.583 51 H 0.353 0.647 52 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 7.666 -17.762 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.083 0.917 5 C -0.007 4.007 6 N -0.362 5.362 7 C 0.313 3.687 8 O -0.438 6.438 9 C -0.108 4.108 10 C -0.077 4.077 11 C -0.159 4.159 12 C -0.155 4.155 13 C -0.157 4.157 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.034 4.034 17 N -0.370 5.370 18 C 0.309 3.691 19 O -0.451 6.451 20 N -0.382 5.382 21 C -0.435 4.435 22 H 0.094 0.906 23 C -0.294 4.294 24 N -0.626 5.626 25 Si 0.945 3.055 26 H -0.211 1.211 27 H -0.232 1.232 28 H -0.197 1.197 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.245 0.755 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.149 0.851 47 H 0.130 0.870 48 H 0.148 0.852 49 H 0.090 0.910 50 H 0.257 0.743 51 H 0.184 0.816 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.464 7.660 -16.623 20.605 hybrid contribution 0.636 -0.966 0.735 1.370 sum 10.100 6.694 -15.888 19.981 Atomic orbital electron populations 1.21675 0.95653 1.00575 1.01892 1.21993 0.96907 0.97260 1.00904 1.20663 0.90506 0.93299 0.89277 0.91697 1.21671 0.94647 0.82614 1.01734 1.46095 1.07054 1.10782 1.72291 1.20200 0.82270 0.90202 0.76046 1.90645 1.56390 1.46477 1.50312 1.21632 0.99667 0.93090 0.96440 1.21710 0.88569 0.98133 0.99273 1.22552 0.98232 0.94806 1.00300 1.22089 0.95835 0.99486 0.98085 1.22120 0.96094 0.97076 1.00443 1.22402 0.97556 1.00508 0.94374 1.23058 0.97010 0.99140 0.96173 1.22505 0.97456 1.05198 0.78280 1.46268 1.33625 1.45202 1.11923 1.20698 0.80058 0.78970 0.89415 1.90727 1.60524 1.64132 1.29751 1.42647 1.15909 1.67375 1.12290 1.20225 0.93022 1.29868 1.00367 0.90609 1.26864 1.07931 1.02082 0.92554 1.71010 1.08322 1.49761 1.33556 0.82724 0.71502 0.75960 0.75269 1.21096 1.23220 1.19711 0.93497 0.92815 0.92906 0.90305 0.94296 0.94032 0.89109 0.75504 0.93391 0.88832 0.93600 0.92496 0.89383 0.92556 0.89499 0.92738 0.89472 0.85147 0.86962 0.85173 0.91018 0.74307 0.81599 0.95175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.18 71.98 0.66 -4.05 16 2 C -0.13 -4.24 5.61 30.59 0.17 -4.07 16 3 C 0.17 6.02 2.59 44.99 0.12 6.14 16 4 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16 5 C 0.12 3.91 5.23 86.38 0.45 4.36 16 6 N -0.71 -23.34 5.19 -463.05 -2.40 -25.75 16 7 C 0.53 17.67 6.30 87.66 0.55 18.22 16 8 O -0.56 -21.69 14.69 -3.02 -0.04 -21.73 16 9 C -0.10 -2.76 0.41 -52.94 -0.02 -2.78 16 10 C -0.06 -1.50 1.81 -9.51 -0.02 -1.52 16 11 C -0.12 -2.49 5.43 31.67 0.17 -2.32 16 12 C -0.12 -1.90 6.80 31.32 0.21 -1.69 16 13 C -0.12 -1.97 6.80 31.32 0.21 -1.75 16 14 C -0.11 -2.33 5.50 31.66 0.17 -2.15 16 15 C -0.12 -1.88 4.50 31.65 0.14 -1.74 16 16 C 0.09 1.53 6.98 86.83 0.61 2.13 16 17 N -0.72 -18.66 6.24 -459.80 -2.87 -21.52 16 18 C 0.52 17.53 6.21 87.90 0.55 18.07 16 19 O -0.57 -25.30 17.87 -3.02 -0.05 -25.36 16 20 N -0.74 -33.50 4.50 -322.95 -1.45 -34.96 16 21 C -0.30 -15.05 7.75 84.03 0.65 -14.40 16 22 H 0.08 3.60 7.32 -2.91 -0.02 3.58 16 23 C -0.10 -5.57 5.50 84.86 0.47 -5.10 16 24 N -0.98 -59.48 13.70 21.65 0.30 -59.18 16 25 Si 1.12 49.15 29.92 68.60 2.05 51.20 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.31 -14.32 7.11 99.48 0.71 -13.62 16 28 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 29 H 0.05 1.94 5.99 -2.39 -0.01 1.92 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.41 13.43 5.69 -92.71 -0.53 12.90 16 37 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 38 H 0.09 1.43 5.78 -2.39 -0.01 1.42 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.43 7.14 -2.38 -0.02 1.41 16 45 H 0.09 1.42 6.68 -2.39 -0.02 1.40 16 46 H 0.13 1.37 5.64 -2.39 -0.01 1.35 16 47 H 0.11 1.51 7.86 -2.39 -0.02 1.49 16 48 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.39 6.86 -2.39 -0.02 1.37 16 50 H 0.42 10.91 8.96 -92.71 -0.83 10.08 16 51 H 0.35 18.14 6.63 -92.70 -0.61 17.53 16 52 H 0.24 14.89 6.78 -92.70 -0.63 14.26 16 Total: -1.00 -74.88 395.23 -0.26 -75.14 By element: Atomic # 1 Polarization: 55.68 SS G_CDS: -0.88 Total: 54.80 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.10 Total: 7.36 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -6.43 Total: -141.41 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -0.10 Total: -47.09 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Total: -74.88 -0.26 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714083391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.458 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds