Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47187 * 2 1 4 4 H 1.09000 * 109.47516 * 55.37753 * 3 2 1 5 5 C 1.53002 * 109.47236 * 175.37329 * 3 2 1 6 6 N 1.46501 * 109.47576 * 174.99938 * 5 3 2 7 7 C 1.34777 * 120.00388 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00047 * 180.02562 * 7 6 5 10 10 H 1.09003 * 115.56507 * 34.31334 * 9 7 6 11 11 C 1.53001 * 117.50134 * 248.61997 * 9 7 6 12 12 C 1.53002 * 117.49709 * 179.97438 * 9 7 6 13 13 H 1.08997 * 117.49918 * 359.97438 * 12 9 7 14 14 C 1.53002 * 117.49706 * 214.97845 * 12 9 7 15 15 C 1.53777 * 113.61296 * 82.51070 * 14 12 9 16 16 C 1.53786 * 87.08212 * 139.97918 * 15 14 12 17 17 C 1.53777 * 87.07764 * 334.56565 * 16 15 14 18 18 N 1.46895 * 109.47357 * 295.37362 * 3 2 1 19 19 C 1.46900 * 111.00316 * 302.89030 * 18 3 2 20 20 C 1.50697 * 109.47172 * 185.63583 * 19 18 3 21 21 O 1.21294 * 120.00038 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00045 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00113 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00141 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00022 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00125 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99999 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47417 * 89.99744 * 27 25 23 29 29 H 1.48495 * 109.47343 * 209.99787 * 27 25 23 30 30 H 1.48503 * 109.47145 * 329.99663 * 27 25 23 31 31 H 1.08996 * 109.47147 * 178.72885 * 1 2 3 32 32 H 1.08995 * 109.47057 * 298.72959 * 1 2 3 33 33 H 1.09005 * 109.46714 * 58.73031 * 1 2 3 34 34 H 1.09000 * 109.47361 * 240.00009 * 2 1 3 35 35 H 1.08996 * 109.46908 * 120.00462 * 2 1 3 36 36 H 1.09001 * 109.46746 * 54.99901 * 5 3 2 37 37 H 1.08995 * 109.47500 * 295.00617 * 5 3 2 38 38 H 0.97006 * 119.99535 * 0.02562 * 6 5 3 39 39 H 1.08998 * 117.49680 * 145.02072 * 11 9 7 40 40 H 1.09004 * 117.49126 * 0.02562 * 11 9 7 41 41 H 1.08993 * 112.90919 * 311.24923 * 14 12 9 42 42 H 1.09005 * 113.61142 * 254.52350 * 15 14 12 43 43 H 1.09000 * 113.61930 * 25.42515 * 15 14 12 44 44 H 1.09001 * 113.61065 * 220.01791 * 16 15 14 45 45 H 1.09000 * 113.61558 * 89.11631 * 16 15 14 46 46 H 1.09009 * 113.61584 * 270.88338 * 17 16 15 47 47 H 1.08993 * 113.69096 * 139.99742 * 17 16 15 48 48 H 1.00899 * 110.99990 * 66.84197 * 18 3 2 49 49 H 1.09001 * 109.46724 * 305.63042 * 19 18 3 50 50 H 1.08995 * 109.47314 * 65.63285 * 19 18 3 51 51 H 0.97001 * 119.99607 * 0.02562 * 22 20 19 52 52 H 0.96996 * 119.99860 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6106 1.9797 0.8457 5 6 3.5656 1.4440 0.1164 6 7 4.0632 2.8167 -0.0035 7 6 5.3863 3.0627 0.0688 8 8 6.1651 2.1476 0.2335 9 6 5.8980 4.4747 -0.0539 10 1 5.2546 5.2466 0.3684 11 6 6.6968 4.8301 -1.3096 12 6 7.4103 4.6885 0.0370 13 1 8.0350 3.8078 0.1860 14 6 7.9033 5.9694 0.7132 15 6 7.9468 5.8782 2.2477 16 6 9.2723 6.6549 2.1777 17 6 9.4355 6.0930 0.7556 18 7 1.6437 2.1020 -1.2513 19 6 2.1483 1.3650 -2.4176 20 6 1.8430 2.1411 -3.6728 21 8 1.2617 3.2034 -3.6027 22 7 2.2157 1.6548 -4.8733 23 6 1.9375 2.3605 -6.0152 24 1 1.4199 3.3064 -5.9529 25 6 2.3213 1.8589 -7.2528 26 7 2.0542 2.5351 -8.3475 27 14 3.2159 0.2226 -7.3608 28 1 2.2253 -0.8749 -7.5011 29 1 4.1182 0.2286 -8.5401 30 1 4.0153 0.0131 -6.1269 31 1 -0.3633 -1.0274 -0.0228 32 1 -0.3633 0.4940 0.9011 33 1 -0.3633 0.5335 -0.8784 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.9912 0.8325 -0.6793 37 1 3.8566 1.0352 1.0839 38 1 3.4402 3.5486 -0.1349 39 1 6.5787 5.8357 -1.7132 40 1 6.8517 4.0426 -2.0471 41 1 7.4032 6.8642 0.3429 42 1 7.1446 6.4274 2.7406 43 1 8.0563 4.8603 2.6218 44 1 10.0262 6.2958 2.8783 45 1 9.1464 7.7372 2.2079 46 1 9.9522 5.1337 0.7217 47 1 9.8353 6.8143 0.0429 48 1 0.6421 2.2135 -1.2998 49 1 3.2263 1.2330 -2.3253 50 1 1.6656 0.3890 -2.4674 51 1 2.6802 0.8051 -4.9293 52 1 2.3218 2.1848 -9.2114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715075547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = -35.172639 kcal Electronic energy + Delta-G solvation = -29479.585060 eV Core-core repulsion = 25480.127742 eV Total energy + Delta-G solvation = -3999.457318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23862 -39.21863 -38.60019 -37.45044 -35.71986 -34.13316 -33.90105 -31.90874 -31.59116 -29.06379 -27.00585 -26.37680 -25.82712 -24.54289 -23.96416 -22.66980 -21.22067 -20.48881 -19.76265 -19.67796 -19.25789 -18.42133 -17.23111 -16.80031 -16.17679 -15.71500 -15.59805 -15.37550 -15.04934 -14.86236 -14.51662 -14.34877 -14.02057 -13.87653 -13.53510 -13.27954 -13.15866 -12.79771 -12.65460 -12.64824 -12.52399 -12.34258 -12.29510 -12.01444 -11.88621 -11.82425 -11.47747 -11.19838 -11.05013 -10.97394 -10.88848 -10.84830 -10.75961 -10.59570 -10.07670 -10.01317 -9.98275 -9.72030 -9.57278 -8.97071 -8.64221 -8.21467 -8.16549 -6.31718 -3.82951 2.56896 3.03171 3.06439 3.13968 3.15236 3.73038 3.73859 4.06705 4.10874 4.36236 4.43551 4.47870 4.54496 4.65254 4.72440 4.82629 4.86171 4.88261 4.96111 5.01872 5.11601 5.17740 5.20827 5.22977 5.34571 5.46723 5.48017 5.51769 5.55369 5.56388 5.64748 5.67664 5.69164 5.71081 5.75082 5.78772 5.81932 5.91132 5.94056 5.98710 6.00527 6.10613 6.13570 6.31593 6.50708 7.00645 7.46926 7.57623 7.65192 8.13862 8.32687 8.59315 8.94554 9.42190 9.82521 10.81408 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.002899 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.463772 B = 9655.761261 C =11843.920283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.091 0.909 5 C 0.127 3.873 6 N -0.709 5.709 7 C 0.542 3.458 8 O -0.553 6.553 9 C -0.185 4.185 10 H 0.121 0.879 11 C -0.144 4.144 12 C -0.109 4.109 13 H 0.116 0.884 14 C -0.082 4.082 15 C -0.134 4.134 16 C -0.145 4.145 17 C -0.133 4.133 18 N -0.658 5.658 19 C 0.041 3.959 20 C 0.452 3.548 21 O -0.564 6.564 22 N -0.591 5.591 23 C -0.304 4.304 24 H 0.119 0.881 25 C 0.042 3.958 26 N -0.881 5.881 27 Si 0.878 3.122 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.354 0.646 49 H 0.087 0.913 50 H 0.049 0.951 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 0.440 21.742 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.109 0.891 5 C 0.003 3.997 6 N -0.360 5.360 7 C 0.329 3.671 8 O -0.432 6.432 9 C -0.207 4.207 10 H 0.139 0.861 11 C -0.182 4.182 12 C -0.127 4.127 13 H 0.134 0.866 14 C -0.100 4.100 15 C -0.171 4.171 16 C -0.182 4.182 17 C -0.170 4.170 18 N -0.290 5.290 19 C -0.092 4.092 20 C 0.237 3.763 21 O -0.446 6.446 22 N -0.231 5.231 23 C -0.433 4.433 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.704 3.296 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.195 1.195 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.248 0.752 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.174 0.826 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.710 0.979 21.666 23.372 hybrid contribution -0.315 -1.849 -0.487 1.937 sum 8.395 -0.869 21.179 22.799 Atomic orbital electron populations 1.21763 0.95185 1.02036 1.02109 1.22213 0.96830 0.97951 1.03040 1.21922 0.94333 0.93533 0.93943 0.89114 1.21380 0.92834 0.83911 1.01611 1.45736 1.07177 1.09992 1.73126 1.19657 0.82168 0.89607 0.75686 1.90667 1.56211 1.46242 1.50050 1.22186 0.96207 0.95749 1.06515 0.86071 1.23049 1.01158 1.03456 0.90525 1.22365 0.91957 0.99346 0.99076 0.86635 1.22166 0.96379 0.96075 0.95412 1.22902 0.97557 1.00888 0.95794 1.22832 0.98022 0.99921 0.97450 1.22910 0.95675 1.01494 0.96929 1.60169 1.19605 1.49809 0.99463 1.21795 1.01288 0.95355 0.90730 1.19690 0.84870 0.87871 0.83833 1.90558 1.44629 1.23176 1.86221 1.42219 1.53263 1.21202 1.06404 1.19413 1.35903 1.05962 0.81978 0.86291 1.25028 0.97828 0.98143 0.95119 1.69617 1.46321 1.38260 0.97946 0.86700 0.80270 0.84082 0.78537 1.19660 1.20126 1.19486 0.92468 0.92478 0.92404 0.91127 0.91268 0.91615 0.91372 0.75182 0.87703 0.88160 0.89069 0.91625 0.89929 0.91564 0.90316 0.89947 0.91458 0.82571 0.89475 0.93321 0.79784 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.70 37.16 0.36 -0.99 16 2 C -0.16 -1.47 5.10 -26.73 -0.14 -1.60 16 3 C 0.07 0.75 2.70 -67.72 -0.18 0.57 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 5 C 0.13 1.47 4.76 -4.04 -0.02 1.45 16 6 N -0.71 -8.77 5.39 -60.30 -0.32 -9.10 16 7 C 0.54 7.53 7.61 -10.99 -0.08 7.45 16 8 O -0.55 -9.44 16.26 5.55 0.09 -9.35 16 9 C -0.19 -2.11 5.91 -91.77 -0.54 -2.65 16 10 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.14 -1.63 9.95 -26.71 -0.27 -1.90 16 12 C -0.11 -1.15 4.93 -90.59 -0.45 -1.60 16 13 H 0.12 1.41 7.66 -51.93 -0.40 1.01 16 14 C -0.08 -0.70 3.81 -89.81 -0.34 -1.04 16 15 C -0.13 -1.07 7.64 -25.92 -0.20 -1.27 16 16 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 17 C -0.13 -1.04 7.64 -25.92 -0.20 -1.24 16 18 N -0.66 -8.89 5.32 -108.00 -0.57 -9.47 16 19 C 0.04 0.65 5.31 -4.98 -0.03 0.62 16 20 C 0.45 10.00 7.83 -10.99 -0.09 9.92 16 21 O -0.56 -14.65 15.90 5.55 0.09 -14.56 16 22 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 23 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 24 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 25 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 26 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 27 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H -0.27 -5.54 6.52 56.52 0.37 -5.18 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.58 6.87 -51.93 -0.36 0.23 16 34 H 0.07 0.71 6.23 -51.93 -0.32 0.38 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.86 6.61 -51.93 -0.34 0.52 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.41 4.86 8.14 -40.82 -0.33 4.53 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 0.74 8.13 -51.93 -0.42 0.31 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.66 8.10 -51.92 -0.42 0.24 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.35 4.90 7.28 -39.29 -0.29 4.62 16 49 H 0.09 1.36 6.22 -51.93 -0.32 1.04 16 50 H 0.05 0.68 6.48 -51.93 -0.34 0.35 16 51 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 416.01 15.07 6.27 6.27 Total: -1.00 -33.21 416.01 -9.90 -43.11 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -8.83 Total: 18.51 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.62 Total: -1.19 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.18 Total: -57.63 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.21 -9.90 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715075547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.937 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds