Wall clock time and date at job start Tue Mar 31 2020 19:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 H 1.08999 * 115.54960 * 29.32592 * 3 2 1 5 5 C 1.53001 * 117.49930 * 243.62170 * 3 2 1 6 6 C 1.53002 * 117.49961 * 174.99640 * 3 2 1 7 7 H 1.08994 * 117.49985 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.49552 * 214.97881 * 6 3 2 9 9 O 1.21276 * 120.00249 * 359.97438 * 8 6 3 10 10 N 1.34781 * 119.99805 * 180.02562 * 8 6 3 11 11 C 1.46497 * 119.99975 * 174.74583 * 10 8 6 12 12 C 1.53008 * 110.43114 * 301.21018 * 11 10 8 13 13 N 1.46894 * 109.47137 * 305.40314 * 12 11 10 14 14 C 1.46903 * 111.00011 * 175.47321 * 13 12 11 15 15 C 1.50695 * 109.47503 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99948 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00320 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00261 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00194 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00112 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99981 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46842 * 90.00820 * 22 20 18 24 24 H 1.48502 * 109.46978 * 210.00738 * 22 20 18 25 25 H 1.48499 * 109.47211 * 330.00755 * 22 20 18 26 26 C 1.54889 * 110.48220 * 178.53119 * 11 10 8 27 27 C 1.54886 * 102.75035 * 279.25805 * 26 11 10 28 28 C 1.54269 * 104.19636 * 322.06441 * 27 26 11 29 29 C 1.53879 * 106.59678 * 23.60610 * 28 27 26 30 30 H 1.08991 * 109.47080 * 300.00196 * 1 2 3 31 31 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 60.00562 * 1 2 3 33 33 H 1.09008 * 109.47022 * 120.00106 * 2 1 3 34 34 H 1.09002 * 109.47269 * 239.99337 * 2 1 3 35 35 H 1.08991 * 117.49852 * 359.97438 * 5 3 2 36 36 H 1.08996 * 117.49698 * 145.01968 * 5 3 2 37 37 H 0.97005 * 119.99284 * 354.74141 * 10 8 6 38 38 H 1.08993 * 109.46695 * 65.40541 * 12 11 10 39 39 H 1.08995 * 109.46657 * 185.40448 * 12 11 10 40 40 H 1.00900 * 111.00588 * 51.51351 * 13 12 11 41 41 H 1.09005 * 109.46635 * 299.99889 * 14 13 12 42 42 H 1.08996 * 109.47288 * 59.99276 * 14 13 12 43 43 H 0.97006 * 120.00042 * 359.97438 * 17 15 14 44 44 H 0.97004 * 120.00057 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.75989 * 37.58105 * 26 11 10 46 46 H 1.09005 * 110.75441 * 160.94805 * 26 11 10 47 47 H 1.08991 * 110.49148 * 203.38115 * 27 26 11 48 48 H 1.09006 * 110.59792 * 80.79324 * 27 26 11 49 49 H 1.09003 * 110.03065 * 264.32513 * 28 27 26 50 50 H 1.08998 * 110.07416 * 142.91107 * 28 27 26 51 51 H 1.09001 * 110.02991 * 240.71896 * 29 28 27 52 52 H 1.08996 * 110.07474 * 119.31302 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4816 5 6 2.8441 1.9075 -1.2158 6 6 3.5503 1.6578 0.1184 7 1 4.1804 0.7718 0.1958 8 6 4.0229 2.8619 0.8915 9 8 3.2158 3.6169 1.3911 10 7 5.3425 3.1004 1.0269 11 6 5.8016 4.3298 1.6781 12 6 5.2715 5.5578 0.9352 13 7 5.6506 5.4744 -0.4815 14 6 5.0672 6.5831 -1.2487 15 6 5.4765 6.4640 -2.6941 16 8 6.1849 5.5460 -3.0502 17 7 5.0554 7.3773 -3.5913 18 6 5.4282 7.2692 -4.9062 19 1 6.0589 6.4519 -5.2232 20 6 4.9936 8.2106 -5.8312 21 7 4.2257 9.2048 -5.4455 22 14 5.5010 8.0628 -7.6229 23 1 4.4996 7.2466 -8.3551 24 1 5.5754 9.4163 -8.2295 25 1 6.8311 7.4083 -7.7083 26 6 7.3486 4.3609 1.7480 27 6 7.6534 3.4677 2.9761 28 6 6.5329 3.8095 3.9799 29 6 5.3556 4.3576 3.1545 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.0100 1.1857 -2.0155 36 1 2.7214 2.9426 -1.5343 37 1 5.9881 2.4579 0.6932 38 1 4.1854 5.5924 1.0193 39 1 5.6988 6.4598 1.3732 40 1 5.3859 4.5838 -0.8750 41 1 3.9804 6.5438 -1.1748 42 1 5.4246 7.5310 -0.8464 43 1 4.4885 8.1113 -3.3067 44 1 3.9226 9.8622 -6.0912 45 1 7.7848 3.9363 0.8437 46 1 7.7076 5.3771 1.9109 47 1 8.6290 3.7145 3.3947 48 1 7.6122 2.4132 2.7030 49 1 6.8800 4.5663 4.6834 50 1 6.2262 2.9126 4.5179 51 1 5.1313 5.3804 3.4575 52 1 4.4772 3.7270 3.2912 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715102940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:00 Heat of formation + Delta-G solvation = -89.791562 kcal Electronic energy + Delta-G solvation = -30175.826415 eV Core-core repulsion = 26174.000643 eV Total energy + Delta-G solvation = -4001.825772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66108 -40.16224 -39.48322 -37.66816 -36.47145 -35.73210 -34.37213 -33.28392 -32.89651 -30.69578 -29.69514 -28.13467 -26.23046 -25.50169 -24.61535 -24.01577 -21.83948 -21.44277 -21.20311 -20.96929 -20.34750 -19.88998 -18.29354 -18.00023 -17.18169 -17.03379 -16.49245 -16.19844 -16.07464 -15.95068 -15.65484 -15.51050 -15.21996 -15.08144 -15.06051 -14.84575 -14.22199 -14.00713 -13.53629 -13.52083 -13.41878 -13.21372 -13.06388 -13.03103 -12.85193 -12.53937 -12.43728 -12.35422 -12.20476 -12.12334 -12.10632 -11.95614 -11.93757 -11.76370 -11.51996 -11.31916 -11.21764 -11.01210 -10.65429 -10.41963 -10.03947 -10.02384 -9.35483 -8.47876 -5.97231 1.37273 1.40959 1.47777 1.54334 2.01367 2.11552 2.27910 2.83733 2.86927 3.18753 3.40245 3.58049 3.66418 3.73775 3.79100 3.82947 3.89589 4.14472 4.22531 4.25071 4.28479 4.37407 4.45611 4.46307 4.52277 4.55768 4.59412 4.64178 4.67261 4.76087 4.79416 4.84324 4.89949 4.93387 4.96226 5.11530 5.12591 5.13912 5.18836 5.27120 5.28019 5.35822 5.39264 5.47121 5.50251 5.66519 5.81753 6.03831 6.29737 6.57074 6.59619 7.09944 7.26783 7.52682 8.07078 8.69728 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008838 B = 0.003113 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.432609 B = 8993.695817 C =11356.477753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.152 4.152 6 C -0.189 4.189 7 H 0.151 0.849 8 C 0.538 3.462 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.177 3.823 12 C 0.053 3.947 13 N -0.662 5.662 14 C 0.062 3.938 15 C 0.442 3.558 16 O -0.617 6.617 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.081 0.919 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.995 3.005 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.121 4.121 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.027 0.973 39 H 0.088 0.912 40 H 0.339 0.661 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -16.108 17.783 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.133 4.133 4 H 0.111 0.889 5 C -0.190 4.190 6 C -0.209 4.209 7 H 0.169 0.831 8 C 0.326 3.674 9 O -0.453 6.453 10 N -0.354 5.354 11 C 0.091 3.909 12 C -0.077 4.077 13 N -0.294 5.294 14 C -0.071 4.071 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.099 0.901 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.155 4.155 29 C -0.161 4.161 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.249 0.751 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.158 0.842 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.228 0.772 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.160 -15.678 17.889 23.787 hybrid contribution -0.999 0.405 -1.059 1.511 sum -0.839 -15.273 16.830 22.743 Atomic orbital electron populations 1.21750 0.95085 1.02336 1.01642 1.21156 0.96348 0.91973 1.03097 1.22450 0.90903 0.99542 1.00397 0.88933 1.23084 1.02470 1.02377 0.91038 1.22417 0.98174 0.98967 1.01388 0.83129 1.20082 0.82393 0.85900 0.79074 1.90651 1.55033 1.50018 1.49626 1.45913 1.06638 1.22838 1.59981 1.21182 0.95557 0.82650 0.91503 1.22411 0.98357 0.98949 0.87950 1.60167 1.62490 1.05033 1.01671 1.21545 0.97367 0.97531 0.90646 1.20650 0.84212 0.83956 0.88297 1.90470 1.42385 1.36141 1.81300 1.41936 1.45856 1.25440 1.07742 1.19691 1.30510 1.11539 0.84547 0.90067 1.26093 0.96185 0.94652 1.04446 1.69687 1.35030 1.14213 1.37353 0.84897 0.78711 0.77931 0.76621 1.19573 1.19567 1.19521 1.22633 0.91252 1.01701 0.99083 1.22386 0.98896 0.99659 0.94692 1.22103 0.94479 1.01063 0.97815 1.22407 0.98859 1.01811 0.92975 0.93137 0.91158 0.93101 0.90503 0.90399 0.85859 0.91221 0.75107 0.95430 0.89405 0.84245 0.93444 0.87768 0.77179 0.91284 0.90835 0.89850 0.90117 0.91000 0.90782 0.91598 0.91259 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.87 71.98 0.71 -1.47 16 2 C -0.09 -1.30 6.21 30.59 0.19 -1.11 16 3 C -0.11 -2.35 5.25 -10.79 -0.06 -2.41 16 4 H 0.09 2.37 7.60 -2.39 -0.02 2.35 16 5 C -0.15 -3.42 9.88 30.60 0.30 -3.11 16 6 C -0.19 -3.82 5.91 -11.54 -0.07 -3.89 16 7 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 8 C 0.54 13.71 6.70 87.66 0.59 14.29 16 9 O -0.57 -18.75 13.16 -3.02 -0.04 -18.79 16 10 N -0.70 -15.08 4.19 -418.08 -1.75 -16.83 16 11 C 0.18 3.97 0.53 4.68 0.00 3.97 16 12 C 0.05 1.50 4.28 86.31 0.37 1.87 16 13 N -0.66 -22.55 6.00 -517.95 -3.11 -25.66 16 14 C 0.06 2.36 6.16 85.55 0.53 2.88 16 15 C 0.44 21.84 7.82 87.66 0.69 22.53 16 16 O -0.62 -34.49 15.78 -3.07 -0.05 -34.54 16 17 N -0.57 -30.40 5.29 -306.99 -1.62 -32.03 16 18 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 19 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16 22 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.11 -2.06 5.70 31.88 0.18 -1.88 16 27 C -0.12 -1.67 6.79 31.67 0.22 -1.46 16 28 C -0.12 -1.78 6.80 31.32 0.21 -1.57 16 29 C -0.12 -2.53 5.67 31.32 0.18 -2.36 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.98 7.88 -2.39 -0.02 0.96 16 35 H 0.12 2.28 8.03 -2.39 -0.02 2.26 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 7.02 8.49 -92.70 -0.79 6.24 16 38 H 0.03 0.90 6.50 -2.39 -0.02 0.89 16 39 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 40 H 0.34 12.32 7.36 -89.69 -0.66 11.66 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 43 H 0.39 20.16 7.90 -92.70 -0.73 19.43 16 44 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 46 H 0.08 1.62 8.01 -2.38 -0.02 1.60 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.07 1.45 7.84 -2.39 -0.02 1.43 16 52 H 0.06 1.43 6.48 -2.39 -0.02 1.41 16 Total: -1.00 -70.63 416.49 -0.19 -70.82 By element: Atomic # 1 Polarization: 55.89 SS G_CDS: -1.25 Total: 54.65 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.32 Total: 7.56 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.20 Total: -125.01 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.09 Total: -53.33 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.63 -0.19 -70.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715102940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.969 kcal (2) G-P(sol) polarization free energy of solvation -70.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds