Wall clock time and date at job start Tue Mar 31 2020 20:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.09001 * 115.55140 * 29.33203 * 3 2 1 5 5 C 1.53005 * 117.51689 * 243.63016 * 3 2 1 6 6 C 1.52994 * 60.00022 * 252.51646 * 5 3 2 7 7 H 1.09008 * 117.51787 * 107.48134 * 6 5 3 8 8 C 1.50702 * 117.50334 * 252.50625 * 6 5 3 9 9 O 1.21282 * 119.99532 * 68.62200 * 8 6 5 10 10 N 1.34776 * 120.00206 * 248.62552 * 8 6 5 11 11 C 1.46498 * 119.99647 * 180.02562 * 10 8 6 12 12 H 1.08999 * 109.47287 * 324.99759 * 11 10 8 13 13 C 1.52994 * 109.47385 * 85.00082 * 11 10 8 14 14 C 1.52999 * 109.47077 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47524 * 299.99909 * 14 13 11 16 16 H 1.08999 * 109.46908 * 300.00189 * 15 14 13 17 17 N 1.46896 * 109.47458 * 180.02562 * 15 14 13 18 18 C 1.46899 * 111.00338 * 84.99712 * 17 15 14 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47459 * 59.99812 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47211 * 300.00250 * 26 24 22 30 30 C 1.53001 * 109.46678 * 59.99772 * 15 14 13 31 31 C 1.52999 * 109.47486 * 299.99986 * 30 15 14 32 32 H 1.09003 * 109.46763 * 299.99622 * 1 2 3 33 33 H 1.08997 * 109.47255 * 59.99607 * 1 2 3 34 34 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46808 * 239.99830 * 2 1 3 36 36 H 1.09003 * 109.47383 * 119.99973 * 2 1 3 37 37 H 1.09005 * 117.49470 * 145.02695 * 5 3 2 38 38 H 1.09000 * 117.49978 * 0.02562 * 5 3 2 39 39 H 0.96993 * 119.99643 * 0.02562 * 10 8 6 40 40 H 1.08996 * 109.46918 * 299.99695 * 13 11 10 41 41 H 1.08999 * 109.47171 * 59.99606 * 13 11 10 42 42 H 1.09009 * 109.46979 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.47080 * 60.00385 * 14 13 11 44 44 H 1.00900 * 110.99693 * 321.04239 * 17 15 14 45 45 H 1.09003 * 109.46477 * 60.00383 * 18 17 15 46 46 H 1.08993 * 109.47002 * 300.00709 * 18 17 15 47 47 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 48 48 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 49 49 H 1.08999 * 109.47110 * 60.00541 * 30 15 14 50 50 H 1.09008 * 109.47052 * 180.02562 * 30 15 14 51 51 H 1.08998 * 109.46854 * 179.97438 * 31 30 15 52 52 H 1.08991 * 109.47282 * 300.00097 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8438 1.9080 -1.2158 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7719 0.1960 8 6 4.0229 2.8617 0.8917 9 8 3.2159 3.6162 1.3921 10 7 5.3425 3.0999 1.0274 11 6 5.8020 4.2698 1.7800 12 1 5.1097 5.0971 1.6239 13 6 5.8599 3.9274 3.2700 14 6 6.3404 5.1491 4.0557 15 6 7.7344 5.5517 3.5705 16 1 8.4264 4.7241 3.7266 17 7 8.1960 6.7243 4.3254 18 6 8.8219 6.3221 5.5920 19 6 9.2823 7.5487 6.3366 20 8 9.1059 8.6497 5.8592 21 7 9.8891 7.4224 7.5334 22 6 10.3130 8.5380 8.2082 23 1 10.1566 9.5183 7.7828 24 6 10.9438 8.4074 9.4393 25 7 11.1345 7.2146 9.9567 26 14 11.5207 9.9275 10.3591 27 1 10.3573 10.8054 10.6434 28 1 12.1584 9.5206 11.6370 29 1 12.5057 10.6650 9.5277 30 6 7.6765 5.8941 2.0804 31 6 7.1961 4.6723 1.2946 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.7210 2.9434 -1.5338 38 1 3.0091 1.1867 -2.0161 39 1 5.9878 2.4967 0.6269 40 1 4.8668 3.6402 3.6155 41 1 6.5522 3.1001 3.4260 42 1 6.3820 4.9049 5.1173 43 1 5.6483 5.9766 3.8997 44 1 7.4391 7.3719 4.4857 45 1 9.6782 5.6797 5.3862 46 1 8.0976 5.7787 6.1987 47 1 10.0299 6.5419 7.9153 48 1 11.5745 7.1234 10.8163 49 1 6.9845 6.7216 1.9244 50 1 8.6698 6.1805 1.7346 51 1 7.1545 4.9165 0.2332 52 1 7.8881 3.8449 1.4506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715188974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:58 Heat of formation + Delta-G solvation = -77.459780 kcal Electronic energy + Delta-G solvation = -28395.427704 eV Core-core repulsion = 24394.136678 eV Total energy + Delta-G solvation = -4001.291026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56518 -39.11369 -38.09020 -37.27122 -35.36282 -33.92503 -33.02403 -32.40529 -31.18873 -30.92777 -28.91830 -26.19190 -24.82874 -24.17676 -23.64540 -22.87006 -21.53992 -20.90545 -20.60753 -19.99688 -19.13725 -17.87588 -17.59280 -16.65477 -16.23395 -15.57633 -15.30387 -15.17500 -14.79186 -14.72083 -14.60928 -14.51812 -14.20864 -14.00891 -13.75072 -13.27409 -13.10751 -12.97241 -12.86856 -12.74540 -12.56570 -12.36928 -12.08221 -11.81136 -11.69939 -11.54091 -11.48704 -11.35032 -11.28406 -11.25035 -11.00417 -10.74031 -10.58983 -10.50614 -10.44838 -10.42501 -10.19217 -10.00991 -9.47830 -9.29200 -8.42227 -7.98952 -7.92293 -6.39609 -3.80379 2.19504 2.78332 3.21820 3.27180 3.31833 3.39029 3.93714 4.08720 4.15923 4.30022 4.32351 4.36290 4.47493 4.59994 4.70406 4.74865 4.87925 4.91782 4.97894 5.01859 5.08587 5.19663 5.20977 5.24467 5.28513 5.32155 5.33389 5.39077 5.45115 5.53718 5.61027 5.63858 5.64201 5.70260 5.80379 5.83247 5.90345 5.93323 5.98417 6.01893 6.07567 6.18461 6.28324 6.29708 6.34288 7.21549 7.29891 7.56997 7.72174 7.95930 8.08587 8.63809 9.20061 9.56794 10.08554 10.78102 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.001533 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.223115 B =18258.852165 C =18735.036325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.122 0.878 8 C 0.542 3.458 9 O -0.539 6.539 10 N -0.723 5.723 11 C 0.144 3.856 12 H 0.088 0.912 13 C -0.122 4.122 14 C -0.149 4.149 15 C 0.087 3.913 16 H 0.076 0.924 17 N -0.664 5.664 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 C -0.102 4.102 31 C -0.123 4.123 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.350 0.650 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.069 0.931 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 -18.349 -21.771 32.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.140 0.860 8 C 0.328 3.672 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.040 3.960 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.188 4.188 15 C -0.024 4.024 16 H 0.094 0.906 17 N -0.295 5.295 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.141 4.141 31 C -0.162 4.162 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.170 0.830 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.689 -17.035 -21.858 31.364 hybrid contribution 0.109 -0.509 1.235 1.340 sum -14.580 -17.544 -20.623 30.752 Atomic orbital electron populations 1.21743 0.95078 1.01722 1.02234 1.21159 0.96402 0.93541 1.02142 1.22493 0.91296 0.98818 1.00992 0.86385 1.23105 1.02027 1.03200 0.90268 1.22327 0.97923 0.98968 1.02218 0.85966 1.19679 0.82345 0.85513 0.79627 1.90714 1.53920 1.48444 1.48462 1.46043 1.06895 1.28806 1.55565 1.21078 0.96139 0.87950 0.90834 0.89384 1.21826 1.01683 0.98295 0.94327 1.22291 0.98297 0.98211 1.00043 1.21641 0.93895 0.93077 0.93769 0.90553 1.60187 1.35786 1.13657 1.19834 1.21696 0.99111 0.96910 0.90470 1.19845 0.84412 0.90065 0.83072 1.90521 1.60549 1.27300 1.68367 1.41861 1.51683 1.09796 1.16752 1.19664 1.34411 0.88323 1.00565 0.87987 1.25252 0.97445 0.98060 0.97144 1.69606 1.43302 1.22093 1.19389 0.85918 0.79018 0.80945 0.78335 1.19931 1.20992 1.19892 1.21425 1.02346 0.96578 0.93745 1.21803 0.94955 0.99249 1.00169 0.92423 0.92494 0.92562 0.91660 0.91385 0.88280 0.87789 0.76648 0.91651 0.91799 0.91550 0.91416 0.83042 0.89724 0.93927 0.77485 0.91860 0.91549 0.90446 0.91234 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.87 37.16 0.37 -0.38 16 2 C -0.10 -0.49 6.22 -26.73 -0.17 -0.66 16 3 C -0.12 -0.81 5.25 -90.62 -0.48 -1.28 16 4 H 0.12 1.05 7.60 -51.93 -0.39 0.66 16 5 C -0.15 -0.86 9.88 -26.73 -0.26 -1.12 16 6 C -0.19 -1.30 5.91 -91.77 -0.54 -1.85 16 7 H 0.12 0.57 8.14 -51.92 -0.42 0.15 16 8 C 0.54 5.31 7.58 -10.98 -0.08 5.22 16 9 O -0.54 -7.55 15.92 5.56 0.09 -7.46 16 10 N -0.72 -5.62 5.08 -53.81 -0.27 -5.90 16 11 C 0.14 1.33 2.45 -67.93 -0.17 1.16 16 12 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 13 C -0.12 -1.23 5.49 -26.73 -0.15 -1.38 16 14 C -0.15 -1.69 5.17 -26.73 -0.14 -1.83 16 15 C 0.09 1.04 2.47 -67.72 -0.17 0.88 16 16 H 0.08 0.89 7.80 -51.93 -0.40 0.49 16 17 N -0.66 -10.71 5.87 -108.00 -0.63 -11.34 16 18 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 19 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 20 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 21 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 22 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 26 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 C -0.10 -1.07 5.53 -26.73 -0.15 -1.22 16 31 C -0.12 -0.98 5.39 -26.73 -0.14 -1.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.27 7.88 -51.93 -0.41 -0.14 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.41 8.03 -51.93 -0.42 -0.01 16 39 H 0.40 1.99 8.60 -40.82 -0.35 1.64 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.80 7.45 -51.92 -0.39 0.41 16 43 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 44 H 0.35 5.95 8.17 -39.29 -0.32 5.62 16 45 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 46 H 0.04 0.69 7.43 -51.93 -0.39 0.31 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 419.84 15.07 6.33 6.33 Total: -1.00 -33.32 419.84 -10.40 -43.72 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -9.21 Total: 13.30 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.43 Total: -0.35 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.24 Total: -55.78 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.18 Total: -23.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.32 -10.40 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715188974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.737 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds