Wall clock time and date at job start Tue Mar 31 2020 19:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99525 * 2 1 4 4 C 1.53003 * 109.47263 * 239.99870 * 3 2 1 5 5 O 1.42894 * 109.47768 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.47224 * 120.00313 * 3 2 1 7 7 C 1.50697 * 109.47540 * 180.02562 * 6 3 2 8 8 O 1.21286 * 119.99664 * 359.97438 * 7 6 3 9 9 N 1.34771 * 120.00062 * 180.02562 * 7 6 3 10 10 C 1.47080 * 120.88062 * 179.97438 * 9 7 6 11 11 C 1.53241 * 108.52251 * 231.19921 * 10 9 7 12 12 N 1.46898 * 109.33875 * 306.17363 * 11 10 9 13 13 C 1.46899 * 110.99680 * 187.25254 * 12 11 10 14 14 H 1.09001 * 110.92225 * 51.09873 * 13 12 11 15 15 C 1.55165 * 111.00428 * 174.99974 * 13 12 11 16 16 C 1.54327 * 102.94078 * 153.57383 * 15 13 12 17 17 N 1.47022 * 107.27336 * 337.80587 * 16 15 13 18 18 C 1.36936 * 125.64736 * 178.97248 * 17 16 15 19 19 H 1.07994 * 119.99970 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99724 * 359.97438 * 18 17 16 21 21 N 1.31612 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99602 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46977 * 89.99693 * 22 20 18 24 24 H 1.48499 * 109.47044 * 209.99715 * 22 20 18 25 25 H 1.48500 * 109.47141 * 330.00049 * 22 20 18 26 26 C 1.47425 * 108.70334 * 358.94217 * 17 16 15 27 27 C 1.46894 * 111.27387 * 63.10371 * 12 11 10 28 28 C 1.47081 * 120.88395 * 0.02562 * 9 7 6 29 29 H 1.07995 * 119.99962 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00158 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00323 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.46869 * 300.00650 * 4 3 2 33 33 H 1.08998 * 109.46761 * 60.00110 * 4 3 2 34 34 H 1.09000 * 109.47301 * 180.02562 * 4 3 2 35 35 H 0.96701 * 114.00012 * 59.99588 * 5 3 2 36 36 H 1.08999 * 109.46957 * 59.99062 * 6 3 2 37 37 H 1.09002 * 109.46573 * 299.99655 * 6 3 2 38 38 H 1.09006 * 109.62461 * 111.49185 * 10 9 7 39 39 H 1.09001 * 109.79029 * 351.01011 * 10 9 7 40 40 H 1.08999 * 109.49352 * 186.20919 * 11 10 9 41 41 H 1.08996 * 109.51100 * 66.14280 * 11 10 9 42 42 H 1.08993 * 110.71917 * 35.21114 * 15 13 12 43 43 H 1.09002 * 110.71751 * 271.93685 * 15 13 12 44 44 H 1.08997 * 109.87800 * 97.22770 * 16 15 13 45 45 H 1.08998 * 109.87662 * 218.38556 * 16 15 13 46 46 H 0.97002 * 120.00251 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.36855 * 142.96531 * 26 17 16 48 48 H 1.08999 * 110.36490 * 265.17846 * 26 17 16 49 49 H 1.09007 * 109.49280 * 56.84924 * 27 12 11 50 50 H 1.08996 * 109.49783 * 176.93642 * 27 12 11 51 51 H 1.09003 * 109.63099 * 248.51097 * 28 9 7 52 52 H 1.09000 * 109.62553 * 8.89343 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9431 1.3863 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6960 2.6917 1.2496 8 8 3.5444 3.4794 0.3400 9 7 4.5387 2.9833 2.2602 10 6 5.2837 4.2513 2.2798 11 6 6.7669 3.9410 2.5079 12 7 6.9114 3.1168 3.7153 13 6 8.3269 2.9407 4.0661 14 1 8.8411 3.9011 4.1036 15 6 8.4764 2.1772 5.4086 16 6 9.8601 1.5073 5.2730 17 7 10.1629 1.4178 3.8371 18 6 11.3095 0.9024 3.2940 19 1 11.4368 0.8811 2.2218 20 6 12.3079 0.4073 4.1216 21 7 12.1529 0.4337 5.4282 22 14 13.8716 -0.2964 3.3805 23 1 14.8777 0.7853 3.2287 24 1 14.4112 -1.3525 4.2742 25 1 13.5690 -0.8812 2.0495 26 6 9.0275 1.9740 3.0789 27 6 6.2427 1.8185 3.5575 28 6 4.7386 2.0415 3.3721 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 3.6514 0.5577 -1.2492 33 1 2.3164 1.3285 -2.1392 34 1 3.4883 2.3301 -1.2490 35 1 0.5438 2.4030 0.7659 36 1 3.6514 0.5578 1.2492 37 1 2.3164 1.3285 2.1392 38 1 4.9128 4.8813 3.0884 39 1 5.1596 4.7670 1.3276 40 1 7.3180 4.8727 2.6354 41 1 7.1619 3.3994 1.6485 42 1 7.6933 1.4266 5.5146 43 1 8.4642 2.8703 6.2499 44 1 10.6155 2.1124 5.7743 45 1 9.8327 0.5088 5.7092 46 1 12.8507 0.0881 6.0066 47 1 9.3852 2.5181 2.2048 48 1 8.3466 1.1782 2.7771 49 1 6.6446 1.3062 2.6833 50 1 6.4136 1.2109 4.4462 51 1 4.3152 2.4586 4.2859 52 1 4.2508 1.0943 3.1418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716832768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:02 Heat of formation + Delta-G solvation = -10.598522 kcal Electronic energy + Delta-G solvation = -30614.833208 eV Core-core repulsion = 26616.441504 eV Total energy + Delta-G solvation = -3998.391704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64935 -39.24791 -38.02718 -36.47793 -34.22111 -33.30266 -32.22273 -31.67177 -30.98046 -29.34841 -28.69211 -27.47035 -25.79116 -24.22177 -23.88725 -23.06114 -21.56480 -20.17002 -19.95816 -19.71976 -18.57372 -17.47892 -17.06950 -16.90121 -16.07406 -15.88387 -15.77142 -15.23343 -14.94791 -14.74549 -14.56973 -14.46586 -14.01881 -13.71935 -13.39967 -13.08892 -12.94338 -12.63762 -12.52234 -12.49237 -12.40660 -12.07440 -11.95418 -11.81224 -11.74880 -11.45308 -11.34353 -11.20047 -11.07970 -10.87040 -10.82093 -10.64314 -10.43397 -10.13295 -10.06496 -9.80958 -9.76679 -9.72218 -9.62244 -8.79597 -8.63284 -8.07037 -6.84694 -5.74658 -3.08431 1.83459 2.53377 2.83474 3.37302 3.42449 3.44189 3.92763 3.98382 4.22973 4.40760 4.47561 4.65683 4.66553 4.84032 4.89175 4.92507 5.08264 5.15720 5.19368 5.27145 5.35280 5.37545 5.46223 5.46473 5.48984 5.57710 5.63959 5.66143 5.72715 5.76821 5.79585 5.84198 5.93258 6.04488 6.11681 6.21294 6.24716 6.34570 6.38034 6.40989 6.48972 6.59515 6.68002 7.20703 7.24444 7.36045 7.42413 7.52535 7.59492 7.79453 8.10770 8.22466 9.18689 9.78718 10.44326 11.36771 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.002411 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.533675 B =11612.050663 C =12232.567268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.165 4.165 7 C 0.516 3.484 8 O -0.522 6.522 9 N -0.614 5.614 10 C 0.119 3.881 11 C 0.040 3.960 12 N -0.525 5.525 13 C 0.069 3.931 14 H 0.089 0.911 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.602 5.602 18 C -0.229 4.229 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.108 3.892 27 C 0.032 3.968 28 C 0.112 3.888 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.367 0.633 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.252 0.748 47 H 0.032 0.968 48 H 0.020 0.980 49 H 0.047 0.953 50 H 0.094 0.906 51 H 0.076 0.924 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.483 1.914 -4.791 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.136 3.864 4 C -0.205 4.205 5 O -0.343 6.343 6 C -0.206 4.206 7 C 0.304 3.696 8 O -0.398 6.398 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.089 4.089 12 N -0.249 5.249 13 C -0.039 4.039 14 H 0.107 0.893 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.020 4.020 27 C -0.097 4.097 28 C -0.011 4.011 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.214 0.786 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.038 0.962 49 H 0.065 0.935 50 H 0.112 0.888 51 H 0.094 0.906 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.287 2.633 -5.385 23.079 hybrid contribution 1.124 -1.239 -0.262 1.693 sum -21.163 1.394 -5.647 21.948 Atomic orbital electron populations 1.23866 0.96019 1.02383 0.99552 1.23632 0.96775 0.98842 1.01232 1.19859 0.87948 0.84024 0.94569 1.21945 0.98863 1.04407 0.95247 1.86731 1.50063 1.48933 1.48549 1.22425 1.00416 0.97146 1.00567 1.20392 0.79351 0.88356 0.81456 1.90671 1.64184 1.50123 1.34865 1.48231 1.43667 1.20003 1.22983 1.21682 0.90359 0.85326 1.02981 1.22453 0.95839 0.98644 0.91921 1.62150 1.14139 1.14874 1.33692 1.22984 0.85452 0.98990 0.96514 0.89313 1.22988 1.00011 0.98723 0.95646 1.21179 0.89907 0.98481 0.85240 1.44382 1.15534 1.71572 1.01425 1.19041 0.92449 1.32811 0.91480 0.90639 1.24798 0.98652 1.01405 0.95521 1.69959 1.33708 1.51570 1.01639 0.86124 0.83275 0.78488 0.77906 1.21558 1.21616 1.20742 1.22163 0.90789 0.94463 0.94628 1.22576 0.92667 0.92084 1.02360 1.21899 0.96708 0.92861 0.89653 0.88204 0.87745 0.86551 0.91796 0.92205 0.88771 0.78585 0.87920 0.88718 0.90984 0.88916 0.89603 0.94185 0.92124 0.91814 0.93513 0.93951 0.93722 0.94922 0.96239 0.93476 0.88766 0.90600 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 13.93 29.01 0.40 -0.78 16 2 C -0.19 -1.36 8.77 -36.03 -0.32 -1.68 16 3 C 0.18 1.62 0.94 -91.77 -0.09 1.53 16 4 C -0.15 -1.56 8.51 37.16 0.32 -1.24 16 5 O -0.54 -5.56 10.84 -53.50 -0.58 -6.14 16 6 C -0.17 -1.37 3.30 -27.88 -0.09 -1.46 16 7 C 0.52 5.98 7.27 -10.99 -0.08 5.90 16 8 O -0.52 -7.78 12.42 -12.72 -0.16 -7.94 16 9 N -0.61 -6.74 3.01 -172.49 -0.52 -7.26 16 10 C 0.12 1.36 6.59 -3.60 -0.02 1.33 16 11 C 0.04 0.50 5.39 -3.70 -0.02 0.48 16 12 N -0.52 -7.13 4.66 -223.81 -1.04 -8.17 16 13 C 0.07 1.17 3.11 -65.56 -0.20 0.96 16 14 H 0.09 1.54 8.05 -51.93 -0.42 1.12 16 15 C -0.14 -2.41 6.46 -24.89 -0.16 -2.57 16 16 C 0.18 4.19 5.37 -3.06 -0.02 4.17 16 17 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 18 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.83 10.31 55.49 0.57 -26.26 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.11 2.18 6.03 -2.53 -0.02 2.16 16 27 C 0.03 0.39 4.73 -3.73 -0.02 0.37 16 28 C 0.11 1.05 6.50 -3.63 -0.02 1.03 16 29 H 0.10 0.54 8.06 -52.49 -0.42 0.11 16 30 H 0.10 0.66 6.41 -52.49 -0.34 0.32 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.24 5.51 -51.93 -0.29 0.96 16 35 H 0.37 2.49 8.05 45.56 0.37 2.86 16 36 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 37 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.12 7.07 -51.93 -0.37 0.76 16 40 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 41 H 0.04 0.56 7.82 -51.93 -0.41 0.15 16 42 H 0.06 1.00 5.80 -51.93 -0.30 0.70 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 45 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.02 0.40 5.63 -51.93 -0.29 0.11 16 49 H 0.05 0.66 6.30 -51.92 -0.33 0.33 16 50 H 0.09 1.18 5.82 -51.93 -0.30 0.88 16 51 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.08 0.60 6.02 -51.93 -0.31 0.29 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -32.93 390.36 -9.95 -42.88 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.91 Total: 2.42 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.59 Total: 3.37 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -1.57 Total: -57.46 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.74 Total: -14.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.93 -9.95 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716832768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.278 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds