Wall clock time and date at job start Tue Mar 31 2020 19:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99694 * 2 1 4 4 C 1.53001 * 109.46832 * 119.99937 * 3 2 1 5 5 O 1.42903 * 109.47206 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47301 * 239.99962 * 3 2 1 7 7 C 1.50703 * 109.47123 * 60.03400 * 6 3 2 8 8 O 1.21281 * 119.99860 * 354.63005 * 7 6 3 9 9 N 1.34776 * 120.00035 * 174.62859 * 7 6 3 10 10 C 1.47079 * 120.87933 * 180.02562 * 9 7 6 11 11 C 1.53246 * 108.51972 * 231.20437 * 10 9 7 12 12 N 1.46901 * 109.33738 * 306.17169 * 11 10 9 13 13 C 1.46899 * 110.99894 * 187.25625 * 12 11 10 14 14 H 1.09007 * 110.63874 * 298.30519 * 13 12 11 15 15 C 1.55160 * 110.71860 * 174.97547 * 13 12 11 16 16 C 1.54912 * 101.57760 * 206.12957 * 15 13 12 17 17 N 1.47421 * 104.83166 * 37.01179 * 16 15 13 18 18 C 1.36935 * 125.64979 * 155.89540 * 17 16 15 19 19 H 1.08010 * 119.99939 * 354.68998 * 18 17 16 20 20 C 1.38808 * 120.00563 * 174.69521 * 18 17 16 21 21 N 1.31627 * 119.99930 * 5.52226 * 20 18 17 22 22 Si 1.86796 * 120.00554 * 185.52445 * 20 18 17 23 23 H 1.48507 * 109.47006 * 94.99273 * 22 20 18 24 24 H 1.48496 * 109.47612 * 214.99283 * 22 20 18 25 25 H 1.48502 * 109.47266 * 334.99529 * 22 20 18 26 26 C 1.47020 * 108.70490 * 335.86392 * 17 16 15 27 27 C 1.46894 * 111.27088 * 63.10214 * 12 11 10 28 28 C 1.47076 * 120.87998 * 0.02562 * 9 7 6 29 29 H 1.08003 * 120.00612 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00217 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.00189 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47094 * 184.91245 * 4 3 2 33 33 H 1.09004 * 109.47296 * 304.91239 * 4 3 2 34 34 H 1.09001 * 109.47175 * 64.91344 * 4 3 2 35 35 H 0.96701 * 114.00032 * 299.99914 * 5 3 2 36 36 H 1.08998 * 109.47423 * 300.03792 * 6 3 2 37 37 H 1.08998 * 109.47393 * 180.02562 * 6 3 2 38 38 H 1.09002 * 109.63263 * 111.49459 * 10 9 7 39 39 H 1.09002 * 109.63065 * 350.90820 * 10 9 7 40 40 H 1.08999 * 109.49648 * 186.20962 * 11 10 9 41 41 H 1.09004 * 109.49146 * 66.12667 * 11 10 9 42 42 H 1.09000 * 111.00490 * 88.06172 * 15 13 12 43 43 H 1.08997 * 111.00710 * 324.20189 * 15 13 12 44 44 H 1.08993 * 110.36953 * 278.16964 * 16 15 13 45 45 H 1.09004 * 110.36633 * 155.84432 * 16 15 13 46 46 H 0.96994 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.87856 * 120.47704 * 26 17 16 48 48 H 1.09000 * 109.88991 * 241.48882 * 26 17 16 49 49 H 1.08997 * 109.49803 * 56.85837 * 27 12 11 50 50 H 1.09009 * 109.49427 * 176.93911 * 27 12 11 51 51 H 1.09007 * 109.62933 * 248.50125 * 28 9 7 52 52 H 1.08989 * 109.63248 * 9.08639 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9430 1.3863 -1.2492 7 6 2.0766 1.3073 -2.4797 8 8 0.8867 1.0994 -2.3711 9 7 2.6240 1.4676 -3.7008 10 6 1.7965 1.3949 -4.9145 11 6 2.4485 0.4090 -5.8898 12 7 3.8469 0.7994 -6.1138 13 6 4.4579 -0.0159 -7.1721 14 1 4.4674 -1.0685 -6.8891 15 6 5.8919 0.4837 -7.4909 16 6 6.0616 0.0241 -8.9605 17 7 4.7342 0.2171 -9.5720 18 6 4.4891 0.3976 -10.9071 19 1 5.3127 0.4924 -11.5994 20 6 3.1822 0.4588 -11.3709 21 7 2.1801 0.4527 -10.5175 22 14 2.8455 0.5497 -13.2060 23 1 2.5929 -0.8162 -13.7312 24 1 1.6538 1.4017 -13.4491 25 1 4.0222 1.1358 -13.8967 26 6 3.7169 0.1828 -8.5111 27 6 4.6275 0.7211 -4.8720 28 6 4.0647 1.7201 -3.8549 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 3.4208 2.3649 1.2944 33 1 2.3275 1.2411 2.1371 34 1 3.7075 0.6104 1.2064 35 1 0.5432 2.4034 -0.7642 36 1 3.6510 0.5575 -1.2496 37 1 3.4883 2.3301 -1.2490 38 1 1.7358 2.3805 -5.3760 39 1 0.7966 1.0465 -4.6556 40 1 1.9101 0.4249 -6.8374 41 1 2.4144 -0.5958 -5.4684 42 1 6.6259 0.0031 -6.8441 43 1 5.9543 1.5689 -7.4113 44 1 6.3478 -1.0269 -8.9987 45 1 6.8055 0.6393 -9.4669 46 1 1.2668 0.4951 -10.8415 47 1 3.1671 1.1239 -8.4943 48 1 3.0292 -0.6451 -8.6833 49 1 4.5632 -0.2879 -4.4648 50 1 5.6695 0.9635 -5.0814 51 1 4.2219 2.7370 -4.2148 52 1 4.5645 1.5868 -2.8956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716832770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:08 Heat of formation + Delta-G solvation = -18.715014 kcal Electronic energy + Delta-G solvation = -30688.236543 eV Core-core repulsion = 26689.492881 eV Total energy + Delta-G solvation = -3998.743662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67947 -39.05347 -37.78891 -36.49708 -34.21086 -33.15011 -32.26211 -31.63130 -31.06473 -29.27407 -28.59191 -27.52475 -25.99099 -24.19511 -23.54380 -22.68062 -21.43192 -20.07472 -19.85766 -19.57822 -18.96072 -17.54128 -17.00488 -16.74804 -16.35163 -15.89359 -15.49813 -15.00477 -14.92975 -14.74587 -14.55979 -14.15707 -14.03892 -13.66767 -13.32345 -13.17293 -12.85644 -12.69215 -12.44907 -12.38767 -12.36577 -12.14620 -11.87660 -11.84722 -11.63422 -11.53013 -11.34418 -11.19711 -11.13681 -10.90416 -10.79096 -10.44762 -10.29415 -10.12303 -10.06389 -9.99791 -9.82222 -9.64075 -9.23261 -8.77748 -8.60612 -8.01814 -6.82428 -5.72482 -3.04643 2.25800 2.47303 2.84079 3.40179 3.45388 3.47462 4.02655 4.04880 4.23707 4.46798 4.51195 4.56628 4.82003 4.93332 5.00790 5.09394 5.11830 5.18703 5.24023 5.27607 5.35306 5.42437 5.45589 5.49058 5.51625 5.53680 5.65064 5.66948 5.79211 5.83001 5.85746 5.86232 5.90114 6.01056 6.09324 6.18421 6.32927 6.44843 6.50444 6.51718 6.64493 6.71121 6.86800 7.15667 7.28615 7.30853 7.53311 7.58356 7.70531 7.86129 8.02682 8.25950 9.21812 9.82310 10.48535 11.39795 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.002394 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.849554 B =11694.448431 C =12485.904065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.191 4.191 3 C 0.178 3.822 4 C -0.134 4.134 5 O -0.562 6.562 6 C -0.166 4.166 7 C 0.515 3.485 8 O -0.542 6.542 9 N -0.609 5.609 10 C 0.117 3.883 11 C 0.042 3.958 12 N -0.521 5.521 13 C 0.056 3.944 14 H 0.037 0.963 15 C -0.122 4.122 16 C 0.134 3.866 17 N -0.605 5.605 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.190 3.810 27 C 0.039 3.961 28 C 0.111 3.889 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.386 0.614 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.030 0.970 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.040 0.960 46 H 0.252 0.748 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.032 0.968 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 0.961 22.165 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.209 4.209 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.207 4.207 7 C 0.304 3.696 8 O -0.421 6.421 9 N -0.342 5.342 10 C -0.005 4.005 11 C -0.087 4.087 12 N -0.246 5.246 13 C -0.053 4.053 14 H 0.055 0.945 15 C -0.161 4.161 16 C 0.007 3.993 17 N -0.332 5.332 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.065 3.935 27 C -0.090 4.090 28 C -0.012 4.012 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.034 0.966 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.106 0.894 51 H 0.098 0.902 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.287 1.510 22.454 22.743 hybrid contribution -0.334 -1.136 -1.432 1.858 sum 2.953 0.374 21.022 21.232 Atomic orbital electron populations 1.23619 0.95964 1.01665 0.97285 1.23205 0.96828 0.97683 1.03216 1.19804 0.88108 0.85335 0.93102 1.21708 0.98714 1.02582 0.96153 1.86429 1.50935 1.48770 1.51058 1.22467 0.99806 1.05019 0.93370 1.20587 0.88651 0.75969 0.84388 1.90649 1.15871 1.49491 1.86095 1.48263 1.09312 1.70447 1.06158 1.21783 0.94789 1.00587 0.83320 1.22498 0.89982 0.95814 1.00383 1.61965 1.01489 1.55313 1.05844 1.23043 0.95666 0.93057 0.93519 0.94512 1.22788 0.94726 1.01240 0.97318 1.21541 0.89716 0.96961 0.91039 1.44411 1.00302 1.85277 1.03242 1.19063 0.92099 1.42678 0.81702 0.90411 1.24805 0.95533 1.02242 0.97845 1.69950 0.98100 1.56941 1.31800 0.86111 0.77505 0.77401 0.84818 1.21710 1.21760 1.20670 1.21118 0.89742 1.01224 0.81422 1.22455 0.98670 0.97286 0.90554 1.21913 0.79840 1.00260 0.99204 0.88094 0.88935 0.87504 0.91581 0.91517 0.91062 0.76202 0.88017 0.88101 0.90481 0.88827 0.87831 0.95127 0.92727 0.90683 0.96599 0.94182 0.93794 0.92565 0.94054 0.95027 0.89387 0.90218 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 12.60 29.01 0.37 -1.22 16 2 C -0.19 -1.93 7.47 -36.02 -0.27 -2.20 16 3 C 0.18 1.67 1.08 -91.77 -0.10 1.57 16 4 C -0.13 -0.98 8.82 37.16 0.33 -0.65 16 5 O -0.56 -6.42 11.92 -51.78 -0.62 -7.04 16 6 C -0.17 -1.40 3.34 -27.88 -0.09 -1.50 16 7 C 0.52 5.96 7.20 -10.98 -0.08 5.88 16 8 O -0.54 -7.56 11.41 -10.99 -0.13 -7.68 16 9 N -0.61 -7.09 3.01 -172.44 -0.52 -7.61 16 10 C 0.12 1.58 6.60 -3.60 -0.02 1.56 16 11 C 0.04 0.64 5.45 -3.70 -0.02 0.62 16 12 N -0.52 -8.01 4.45 -224.13 -1.00 -9.01 16 13 C 0.06 1.00 2.65 -65.88 -0.17 0.83 16 14 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 15 C -0.12 -2.04 5.38 -24.58 -0.13 -2.17 16 16 C 0.13 2.72 7.23 -2.53 -0.02 2.70 16 17 N -0.61 -15.35 3.39 -170.07 -0.58 -15.93 16 18 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 21 N -0.92 -26.63 10.34 55.49 0.57 -26.05 16 22 Si 0.91 22.04 29.56 -169.99 -5.02 17.01 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.19 4.48 3.84 -3.07 -0.01 4.47 16 27 C 0.04 0.46 5.47 -3.69 -0.02 0.44 16 28 C 0.11 1.07 6.46 -3.59 -0.02 1.05 16 29 H 0.10 1.12 6.41 -52.48 -0.34 0.79 16 30 H 0.09 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.11 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.39 4.52 5.79 45.56 0.26 4.78 16 36 H 0.10 0.68 7.90 -51.93 -0.41 0.27 16 37 H 0.10 0.72 7.73 -51.93 -0.40 0.32 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.31 7.06 -51.93 -0.37 0.94 16 40 H 0.10 1.83 6.78 -51.93 -0.35 1.48 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.48 7.09 -51.92 -0.37 1.12 16 48 H 0.04 1.10 7.36 -51.93 -0.38 0.71 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.94 6.80 -51.92 -0.35 0.58 16 51 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 52 H 0.08 0.56 6.05 -51.94 -0.31 0.25 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -31.47 393.48 -10.35 -41.83 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.48 Total: 3.94 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.52 Total: 4.61 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.52 Total: -58.59 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.74 Total: -14.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.47 -10.35 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716832770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.111 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds