Wall clock time and date at job start Tue Mar 31 2020 19:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99694 * 2 1 4 4 C 1.53001 * 109.46832 * 119.99937 * 3 2 1 5 5 O 1.42903 * 109.47206 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47301 * 239.99962 * 3 2 1 7 7 C 1.50703 * 109.47123 * 60.03400 * 6 3 2 8 8 O 1.21281 * 119.99860 * 354.63005 * 7 6 3 9 9 N 1.34776 * 120.00035 * 174.62859 * 7 6 3 10 10 C 1.47079 * 120.87933 * 180.02562 * 9 7 6 11 11 C 1.53246 * 108.51972 * 231.20437 * 10 9 7 12 12 N 1.46901 * 109.33738 * 306.17169 * 11 10 9 13 13 C 1.46899 * 110.99894 * 187.25625 * 12 11 10 14 14 H 1.09007 * 110.63874 * 298.30519 * 13 12 11 15 15 C 1.55160 * 110.71860 * 174.97547 * 13 12 11 16 16 C 1.54912 * 101.57760 * 206.12957 * 15 13 12 17 17 N 1.47421 * 104.83166 * 37.01179 * 16 15 13 18 18 C 1.36935 * 125.64979 * 155.89540 * 17 16 15 19 19 H 1.08010 * 119.99939 * 354.68998 * 18 17 16 20 20 C 1.38808 * 120.00563 * 174.69521 * 18 17 16 21 21 N 1.31627 * 119.99930 * 5.52226 * 20 18 17 22 22 Si 1.86796 * 120.00554 * 185.52445 * 20 18 17 23 23 H 1.48507 * 109.47006 * 94.99273 * 22 20 18 24 24 H 1.48496 * 109.47612 * 214.99283 * 22 20 18 25 25 H 1.48502 * 109.47266 * 334.99529 * 22 20 18 26 26 C 1.47020 * 108.70490 * 335.86392 * 17 16 15 27 27 C 1.46894 * 111.27088 * 63.10214 * 12 11 10 28 28 C 1.47076 * 120.87998 * 0.02562 * 9 7 6 29 29 H 1.08003 * 120.00612 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00217 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.00189 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47094 * 184.91245 * 4 3 2 33 33 H 1.09004 * 109.47296 * 304.91239 * 4 3 2 34 34 H 1.09001 * 109.47175 * 64.91344 * 4 3 2 35 35 H 0.96701 * 114.00032 * 299.99914 * 5 3 2 36 36 H 1.08998 * 109.47423 * 300.03792 * 6 3 2 37 37 H 1.08998 * 109.47393 * 180.02562 * 6 3 2 38 38 H 1.09002 * 109.63263 * 111.49459 * 10 9 7 39 39 H 1.09002 * 109.63065 * 350.90820 * 10 9 7 40 40 H 1.08999 * 109.49648 * 186.20962 * 11 10 9 41 41 H 1.09004 * 109.49146 * 66.12667 * 11 10 9 42 42 H 1.09000 * 111.00490 * 88.06172 * 15 13 12 43 43 H 1.08997 * 111.00710 * 324.20189 * 15 13 12 44 44 H 1.08993 * 110.36953 * 278.16964 * 16 15 13 45 45 H 1.09004 * 110.36633 * 155.84432 * 16 15 13 46 46 H 0.96994 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.87856 * 120.47704 * 26 17 16 48 48 H 1.09000 * 109.88991 * 241.48882 * 26 17 16 49 49 H 1.08997 * 109.49803 * 56.85837 * 27 12 11 50 50 H 1.09009 * 109.49427 * 176.93911 * 27 12 11 51 51 H 1.09007 * 109.62933 * 248.50125 * 28 9 7 52 52 H 1.08989 * 109.63248 * 9.08639 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9430 1.3863 -1.2492 7 6 2.0766 1.3073 -2.4797 8 8 0.8867 1.0994 -2.3711 9 7 2.6240 1.4676 -3.7008 10 6 1.7965 1.3949 -4.9145 11 6 2.4485 0.4090 -5.8898 12 7 3.8469 0.7994 -6.1138 13 6 4.4579 -0.0159 -7.1721 14 1 4.4674 -1.0685 -6.8891 15 6 5.8919 0.4837 -7.4909 16 6 6.0616 0.0241 -8.9605 17 7 4.7342 0.2171 -9.5720 18 6 4.4891 0.3976 -10.9071 19 1 5.3127 0.4924 -11.5994 20 6 3.1822 0.4588 -11.3709 21 7 2.1801 0.4527 -10.5175 22 14 2.8455 0.5497 -13.2060 23 1 2.5929 -0.8162 -13.7312 24 1 1.6538 1.4017 -13.4491 25 1 4.0222 1.1358 -13.8967 26 6 3.7169 0.1828 -8.5111 27 6 4.6275 0.7211 -4.8720 28 6 4.0647 1.7201 -3.8549 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 3.4208 2.3649 1.2944 33 1 2.3275 1.2411 2.1371 34 1 3.7075 0.6104 1.2064 35 1 0.5432 2.4034 -0.7642 36 1 3.6510 0.5575 -1.2496 37 1 3.4883 2.3301 -1.2490 38 1 1.7358 2.3805 -5.3760 39 1 0.7966 1.0465 -4.6556 40 1 1.9101 0.4249 -6.8374 41 1 2.4144 -0.5958 -5.4684 42 1 6.6259 0.0031 -6.8441 43 1 5.9543 1.5689 -7.4113 44 1 6.3478 -1.0269 -8.9987 45 1 6.8055 0.6393 -9.4669 46 1 1.2668 0.4951 -10.8415 47 1 3.1671 1.1239 -8.4943 48 1 3.0292 -0.6451 -8.6833 49 1 4.5632 -0.2879 -4.4648 50 1 5.6695 0.9635 -5.0814 51 1 4.2219 2.7370 -4.2148 52 1 4.5645 1.5868 -2.8956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716832770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:07 Heat of formation + Delta-G solvation = -40.201301 kcal Electronic energy + Delta-G solvation = -30689.168258 eV Core-core repulsion = 26689.492881 eV Total energy + Delta-G solvation = -3999.675377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57987 -40.20793 -38.88960 -37.75316 -35.52433 -34.09197 -33.87144 -32.64442 -31.91802 -30.81573 -29.76022 -28.75601 -27.40061 -25.84170 -24.68204 -23.46250 -22.47897 -21.75974 -21.12707 -20.55777 -19.92214 -18.91480 -18.37322 -17.71354 -17.22525 -17.08651 -16.76224 -16.56537 -15.90786 -15.84980 -15.80203 -15.41575 -15.18959 -14.76774 -14.57863 -14.36795 -14.17790 -13.63184 -13.57426 -13.39770 -13.32983 -13.23174 -13.03110 -12.95883 -12.85403 -12.70821 -12.60870 -12.56321 -12.52329 -12.27381 -11.97782 -11.91655 -11.79241 -11.77074 -11.56598 -11.34519 -11.07555 -10.85526 -10.70846 -10.03670 -9.77287 -9.22315 -8.87292 -7.84711 -5.19217 1.45226 1.46804 1.47803 1.55821 1.61746 1.94228 2.49006 2.85010 3.32798 3.34439 3.46393 3.74141 3.75428 3.82474 3.87239 3.97388 4.02137 4.14996 4.20411 4.28855 4.33412 4.38110 4.41854 4.45097 4.55823 4.60133 4.63466 4.69965 4.74844 4.77209 4.87098 4.89476 4.93666 4.97406 5.01749 5.06591 5.12872 5.14978 5.32100 5.37787 5.42396 5.46997 5.52412 5.73173 5.75251 5.94296 6.11143 6.19531 6.24397 6.44050 6.70267 7.11333 7.15327 7.79593 8.43899 9.25572 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.002394 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.849554 B =11694.448431 C =12485.904065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.188 4.188 3 C 0.168 3.832 4 C -0.132 4.132 5 O -0.576 6.576 6 C -0.157 4.157 7 C 0.509 3.491 8 O -0.572 6.572 9 N -0.610 5.610 10 C 0.128 3.872 11 C 0.052 3.948 12 N -0.529 5.529 13 C 0.071 3.929 14 H 0.038 0.962 15 C -0.102 4.102 16 C 0.124 3.876 17 N -0.631 5.631 18 C -0.241 4.241 19 H 0.083 0.917 20 C -0.067 4.067 21 N -0.948 5.948 22 Si 0.976 3.024 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.205 3.795 27 C 0.038 3.962 28 C 0.112 3.888 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.381 0.619 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.047 0.953 46 H 0.245 0.755 47 H 0.017 0.983 48 H -0.004 1.004 49 H 0.037 0.963 50 H 0.109 0.891 51 H 0.082 0.918 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 1.101 24.102 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.206 4.206 3 C 0.127 3.873 4 C -0.189 4.189 5 O -0.386 6.386 6 C -0.197 4.197 7 C 0.300 3.700 8 O -0.453 6.453 9 N -0.343 5.343 10 C 0.005 3.995 11 C -0.077 4.077 12 N -0.255 5.255 13 C -0.038 4.038 14 H 0.056 0.944 15 C -0.140 4.140 16 C -0.001 4.001 17 N -0.358 5.358 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.597 5.597 22 Si 0.805 3.195 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.079 3.921 27 C -0.090 4.090 28 C -0.010 4.010 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.232 0.768 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.014 0.986 49 H 0.055 0.945 50 H 0.127 0.873 51 H 0.100 0.900 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.698 1.652 24.419 25.375 hybrid contribution -1.362 -1.205 -2.026 2.722 sum 5.336 0.447 22.394 23.025 Atomic orbital electron populations 1.23643 0.96654 1.01363 0.99005 1.23473 0.96703 0.98782 1.01667 1.20109 0.88108 0.84279 0.94763 1.21741 0.98700 1.03931 0.94489 1.86425 1.51409 1.49756 1.50978 1.22500 0.99347 1.07316 0.90532 1.21260 0.88716 0.75016 0.85041 1.90653 1.17502 1.50617 1.86490 1.48327 1.10113 1.70465 1.05402 1.21451 0.94638 0.99386 0.84040 1.22286 0.90236 0.96246 0.98943 1.61906 1.01562 1.54568 1.07423 1.22708 0.95889 0.93741 0.91455 0.94393 1.22702 0.94347 1.01579 0.95351 1.21810 0.87460 0.97590 0.93241 1.44780 1.02831 1.85088 1.03076 1.19464 0.92353 1.41801 0.83358 0.89888 1.25661 0.95554 1.02787 1.02046 1.70196 0.97963 1.58144 1.33376 0.85086 0.77365 0.77090 0.79973 1.21624 1.22297 1.19069 1.20742 0.89478 0.97355 0.84496 1.22637 0.99153 0.98357 0.88860 1.22121 0.78456 0.99710 1.00706 0.89267 0.88625 0.86135 0.90915 0.92367 0.88509 0.76770 0.85122 0.85907 0.91247 0.89905 0.91669 0.95474 0.88109 0.90563 0.95843 0.93439 0.94608 0.96479 0.98565 0.94490 0.87269 0.89984 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 12.60 67.78 0.85 -2.79 16 2 C -0.19 -3.49 7.47 25.65 0.19 -3.30 16 3 C 0.17 2.75 1.08 -11.54 -0.01 2.73 16 4 C -0.13 -1.47 8.82 71.98 0.64 -0.84 16 5 O -0.58 -12.63 11.92 -133.16 -1.59 -14.22 16 6 C -0.16 -2.02 3.34 29.85 0.10 -1.92 16 7 C 0.51 10.74 7.20 87.66 0.63 11.37 16 8 O -0.57 -15.78 11.41 12.79 0.15 -15.64 16 9 N -0.61 -13.01 3.01 -817.88 -2.46 -15.47 16 10 C 0.13 3.53 6.60 86.35 0.57 4.10 16 11 C 0.05 1.65 5.45 86.39 0.47 2.12 16 12 N -0.53 -15.78 4.45 -863.00 -3.84 -19.62 16 13 C 0.07 2.51 2.65 46.10 0.12 2.64 16 14 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 15 C -0.10 -3.08 5.38 31.99 0.17 -2.91 16 16 C 0.12 4.86 7.23 86.86 0.63 5.49 16 17 N -0.63 -32.55 3.39 -691.99 -2.35 -34.90 16 18 C -0.24 -13.60 10.27 84.03 0.86 -12.74 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.89 5.48 84.86 0.47 -3.43 16 21 N -0.95 -57.74 10.34 21.65 0.22 -57.52 16 22 Si 0.98 46.35 29.56 68.60 2.03 48.38 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.20 10.10 3.84 86.73 0.33 10.44 16 27 C 0.04 0.74 5.47 86.39 0.47 1.21 16 28 C 0.11 1.71 6.46 86.36 0.56 2.27 16 29 H 0.09 2.08 6.41 -2.91 -0.02 2.07 16 30 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.38 8.99 5.79 -74.06 -0.43 8.56 16 36 H 0.13 0.99 7.90 -2.39 -0.02 0.97 16 37 H 0.12 1.12 7.73 -2.39 -0.02 1.10 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.45 7.06 -2.39 -0.02 2.43 16 40 H 0.06 2.55 6.78 -2.39 -0.02 2.53 16 41 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.10 2.21 7.93 -2.39 -0.02 2.19 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.02 0.96 7.09 -2.38 -0.02 0.94 16 48 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.11 1.73 6.80 -2.38 -0.02 1.71 16 51 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.13 0.91 6.05 -2.39 -0.01 0.89 16 Total: -1.00 -73.51 393.48 -0.32 -73.84 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.47 Total: 20.72 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.05 Total: 14.43 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -8.43 Total: -127.51 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.44 Total: -29.85 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.51 -0.32 -73.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716832770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.635 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds