Wall clock time and date at job start Tue Mar 31 2020 19:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32992 * 120.00172 * 2 1 4 4 C 1.50696 * 119.99895 * 180.02562 * 3 2 1 5 5 C 1.47100 * 120.00120 * 0.02562 * 3 2 1 6 6 O 1.21614 * 120.00121 * 359.97438 * 5 3 2 7 7 N 1.34780 * 120.00123 * 179.97438 * 5 3 2 8 8 C 1.46492 * 119.99930 * 179.97438 * 7 5 3 9 9 H 1.09002 * 109.47696 * 34.99761 * 8 7 5 10 10 C 1.53002 * 109.47204 * 155.00105 * 8 7 5 11 11 C 1.53000 * 109.47233 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 8 13 13 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 15 15 N 1.46897 * 109.47438 * 175.00032 * 14 12 11 16 16 C 1.46902 * 111.00214 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47406 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99871 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00192 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99738 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46958 * 60.00426 * 24 22 20 26 26 H 1.48503 * 109.47125 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47136 * 300.00830 * 24 22 20 28 28 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 29 29 C 1.52997 * 109.47244 * 274.99857 * 8 7 5 30 30 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46973 * 299.99216 * 1 2 3 32 32 H 1.09001 * 109.47424 * 59.98788 * 1 2 3 33 33 H 1.07999 * 119.99740 * 180.02562 * 2 1 3 34 34 H 1.09010 * 109.47532 * 270.00311 * 4 3 2 35 35 H 1.09000 * 109.47498 * 30.00438 * 4 3 2 36 36 H 1.09001 * 109.47200 * 150.00498 * 4 3 2 37 37 H 0.96998 * 119.99716 * 359.97438 * 7 5 3 38 38 H 1.08992 * 109.47063 * 59.99836 * 10 8 7 39 39 H 1.09004 * 109.46733 * 299.99549 * 10 8 7 40 40 H 1.09002 * 109.47398 * 59.99826 * 11 10 8 41 41 H 1.09001 * 109.47194 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.47359 * 295.00205 * 14 12 11 43 43 H 1.09002 * 109.46906 * 55.00224 * 14 12 11 44 44 H 1.00902 * 110.99988 * 303.95181 * 15 14 12 45 45 H 1.09003 * 109.47036 * 300.00353 * 16 15 14 46 46 H 1.09003 * 109.47279 * 60.00093 * 16 15 14 47 47 H 0.96998 * 120.00157 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99334 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.47486 * 180.02562 * 28 12 11 50 50 H 1.09002 * 109.46716 * 60.00091 * 28 12 11 51 51 H 1.09002 * 109.47153 * 300.00242 * 29 8 7 52 52 H 1.09001 * 109.47289 * 60.00326 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 0.2204 2.4258 0.0006 7 7 2.1105 3.5929 0.0011 8 6 1.3781 4.8616 0.0011 9 1 0.4671 4.7553 0.5901 10 6 2.2550 5.9568 0.6113 11 6 1.4898 7.2817 0.6119 12 6 1.1261 7.6612 -0.8250 13 1 2.0368 7.7678 -1.4143 14 6 0.3614 8.9863 -0.8245 15 7 0.1167 9.4109 -2.2093 16 6 -0.6167 10.6832 -2.2481 17 6 -0.8493 11.0856 -3.6817 18 8 -0.4436 10.3819 -4.5825 19 7 -1.5072 12.2278 -3.9628 20 6 -1.7183 12.5940 -5.2670 21 1 -1.3578 11.9670 -6.0690 22 6 -2.3971 13.7713 -5.5568 23 7 -2.8362 14.5339 -4.5808 24 14 -2.6854 14.2700 -7.3338 25 1 -3.4799 13.2196 -8.0200 26 1 -3.4262 15.5564 -7.3729 27 1 -1.3788 14.4305 -8.0211 28 6 0.2491 6.5660 -1.4353 29 6 1.0148 5.2407 -1.4359 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 2.0469 -0.9353 -0.0004 34 1 4.0428 1.1514 1.0270 35 1 4.0421 0.2618 -0.5148 36 1 4.0421 2.0418 -0.5143 37 1 3.0805 3.5928 0.0015 38 1 3.1659 6.0631 0.0223 39 1 2.5138 5.6867 1.6351 40 1 0.5791 7.1751 1.2012 41 1 2.1148 8.0621 1.0462 42 1 -0.5910 8.8561 -0.3108 43 1 0.9508 9.7456 -0.3105 44 1 0.9812 9.4764 -2.7256 45 1 -1.5759 10.5651 -1.7440 46 1 -0.0338 11.4541 -1.7440 47 1 -1.8313 12.7907 -3.2424 48 1 -3.3097 15.3559 -4.7832 49 1 -0.0097 6.8361 -2.4591 50 1 -0.6616 6.4594 -0.8459 51 1 1.9257 5.3471 -2.0250 52 1 0.3899 4.4606 -1.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717118787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:41 Heat of formation + Delta-G solvation = -84.244251 kcal Electronic energy + Delta-G solvation = -28602.307653 eV Core-core repulsion = 24600.722430 eV Total energy + Delta-G solvation = -4001.585223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47569 -38.87369 -38.12049 -35.89012 -35.19354 -34.19846 -33.65884 -31.24364 -30.94004 -30.87350 -29.71246 -26.95913 -25.39927 -24.72571 -23.51328 -22.92164 -22.25095 -20.92704 -20.30232 -19.35319 -19.08064 -17.84711 -16.62787 -16.55053 -16.08731 -15.62692 -15.32231 -14.89572 -14.68163 -14.55035 -14.41022 -14.18466 -14.11826 -13.99448 -13.63636 -13.42700 -13.34112 -13.02536 -12.95641 -12.71408 -12.44527 -12.39304 -12.26700 -12.09756 -11.87142 -11.82768 -11.55358 -11.45958 -11.26944 -11.09822 -10.97267 -10.63680 -10.46142 -10.41990 -10.27454 -10.18523 -9.74008 -9.50427 -9.47302 -9.09649 -8.41133 -7.98718 -7.92048 -6.39073 -3.79789 1.06633 2.94983 3.00614 3.22093 3.27410 3.32057 3.94656 4.11957 4.31428 4.36028 4.44905 4.48080 4.67649 4.76388 4.81844 4.93113 5.01633 5.10677 5.11934 5.21800 5.23698 5.28376 5.30241 5.37000 5.38293 5.39507 5.47899 5.57688 5.62119 5.64130 5.73109 5.76428 5.79472 5.86904 5.91746 5.97981 6.03120 6.05867 6.09706 6.20819 6.24466 6.30602 6.32929 6.43838 6.54001 7.28934 7.29196 7.57478 7.73207 8.02036 8.09196 8.64509 9.20610 9.57535 10.09312 10.78645 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.001619 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.634308 B =17293.267963 C =17895.355512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.114 4.114 5 C 0.549 3.451 6 O -0.535 6.535 7 N -0.725 5.725 8 C 0.145 3.855 9 H 0.087 0.913 10 C -0.123 4.123 11 C -0.110 4.110 12 C -0.084 4.084 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.667 5.667 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.104 4.104 29 C -0.128 4.128 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.347 0.653 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.084 0.916 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 -23.433 15.836 31.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.204 4.204 4 C -0.171 4.171 5 C 0.338 3.662 6 O -0.414 6.414 7 N -0.376 5.376 8 C 0.041 3.959 9 H 0.105 0.895 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.103 4.103 13 H 0.088 0.912 14 C -0.067 4.067 15 N -0.299 5.299 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.142 4.142 29 C -0.166 4.166 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.167 0.833 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.012 -24.077 15.146 30.877 hybrid contribution 0.872 1.352 -0.127 1.614 sum 12.885 -22.724 15.018 30.133 Atomic orbital electron populations 1.21040 0.91631 1.01004 1.04273 1.23650 0.97348 0.96636 0.91129 1.21484 0.96343 0.93308 1.09264 1.20758 0.91002 1.02936 1.02361 1.18406 0.87327 0.84104 0.76347 1.90802 1.13515 1.87515 1.49533 1.46085 1.10185 1.05753 1.75620 1.21058 0.95687 0.81749 0.97437 0.89459 1.21770 0.98738 0.94761 1.00819 1.21500 1.00326 0.95937 0.97046 1.21169 0.98771 0.94776 0.95601 0.91187 1.22014 0.99465 0.95050 0.90138 1.60062 1.27325 1.30617 1.11906 1.21664 0.99376 0.90476 0.96675 1.19839 0.84308 0.83373 0.89811 1.90517 1.55024 1.53622 1.47580 1.41860 1.49722 1.19809 1.08735 1.19658 1.33720 1.05523 0.84036 0.87996 1.25258 0.96900 0.96065 0.99725 1.69610 1.38569 1.14249 1.31953 0.85917 0.78581 0.77675 0.82023 1.19894 1.20992 1.19955 1.21463 0.97558 0.92184 1.02992 1.21945 1.00735 0.98295 0.95654 0.93031 0.90098 0.89947 0.85933 0.91170 0.91184 0.91750 0.76789 0.91463 0.91576 0.91507 0.91537 0.91131 0.95689 0.83345 0.89695 0.94040 0.77474 0.91862 0.89745 0.92107 0.92045 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.45 36.01 0.30 -0.73 16 2 C -0.07 -0.48 9.95 -36.13 -0.36 -0.84 16 3 C -0.20 -1.52 6.00 -102.85 -0.62 -2.14 16 4 C -0.11 -0.51 9.61 36.00 0.35 -0.17 16 5 C 0.55 5.57 7.68 -12.66 -0.10 5.47 16 6 O -0.53 -7.19 12.73 5.27 0.07 -7.13 16 7 N -0.73 -5.90 5.02 -54.99 -0.28 -6.17 16 8 C 0.14 1.32 2.45 -67.94 -0.17 1.15 16 9 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 10 C -0.12 -0.89 5.39 -26.73 -0.14 -1.03 16 11 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 12 C -0.08 -0.87 2.33 -90.63 -0.21 -1.08 16 13 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 14 C 0.06 0.77 5.07 -3.83 -0.02 0.75 16 15 N -0.67 -10.78 5.58 -115.06 -0.64 -11.43 16 16 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 17 C 0.44 10.59 7.82 -10.98 -0.09 10.51 16 18 O -0.58 -16.06 15.78 5.55 0.09 -15.98 16 19 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 20 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 24 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 28 C -0.10 -1.21 5.09 -26.70 -0.14 -1.35 16 29 C -0.13 -1.35 5.50 -26.70 -0.15 -1.50 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.79 7.22 -51.93 -0.37 0.42 16 32 H 0.08 0.84 7.22 -51.93 -0.37 0.47 16 33 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.07 0.26 8.14 -51.92 -0.42 -0.17 16 35 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 36 H 0.06 0.24 6.71 -51.93 -0.35 -0.10 16 37 H 0.40 2.23 6.70 -40.82 -0.27 1.96 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 49 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 415.31 15.07 6.26 6.26 Total: -1.00 -32.98 415.31 -9.70 -42.68 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -9.09 Total: 13.39 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.74 Total: 0.77 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.25 Total: -56.27 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.15 Total: -23.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.98 -9.70 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717118787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.568 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds