Wall clock time and date at job start Tue Mar 31 2020 19:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32992 * 120.00172 * 2 1 4 4 C 1.50696 * 119.99895 * 180.02562 * 3 2 1 5 5 C 1.47100 * 120.00120 * 0.02562 * 3 2 1 6 6 O 1.21614 * 120.00121 * 359.97438 * 5 3 2 7 7 N 1.34780 * 120.00123 * 179.97438 * 5 3 2 8 8 C 1.46492 * 119.99930 * 179.97438 * 7 5 3 9 9 H 1.09002 * 109.47696 * 34.99761 * 8 7 5 10 10 C 1.53002 * 109.47204 * 155.00105 * 8 7 5 11 11 C 1.53000 * 109.47233 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 8 13 13 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 15 15 N 1.46897 * 109.47438 * 175.00032 * 14 12 11 16 16 C 1.46902 * 111.00214 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47406 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99871 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00192 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99738 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46958 * 60.00426 * 24 22 20 26 26 H 1.48503 * 109.47125 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47136 * 300.00830 * 24 22 20 28 28 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 29 29 C 1.52997 * 109.47244 * 274.99857 * 8 7 5 30 30 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46973 * 299.99216 * 1 2 3 32 32 H 1.09001 * 109.47424 * 59.98788 * 1 2 3 33 33 H 1.07999 * 119.99740 * 180.02562 * 2 1 3 34 34 H 1.09010 * 109.47532 * 270.00311 * 4 3 2 35 35 H 1.09000 * 109.47498 * 30.00438 * 4 3 2 36 36 H 1.09001 * 109.47200 * 150.00498 * 4 3 2 37 37 H 0.96998 * 119.99716 * 359.97438 * 7 5 3 38 38 H 1.08992 * 109.47063 * 59.99836 * 10 8 7 39 39 H 1.09004 * 109.46733 * 299.99549 * 10 8 7 40 40 H 1.09002 * 109.47398 * 59.99826 * 11 10 8 41 41 H 1.09001 * 109.47194 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.47359 * 295.00205 * 14 12 11 43 43 H 1.09002 * 109.46906 * 55.00224 * 14 12 11 44 44 H 1.00902 * 110.99988 * 303.95181 * 15 14 12 45 45 H 1.09003 * 109.47036 * 300.00353 * 16 15 14 46 46 H 1.09003 * 109.47279 * 60.00093 * 16 15 14 47 47 H 0.96998 * 120.00157 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99334 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.47486 * 180.02562 * 28 12 11 50 50 H 1.09002 * 109.46716 * 60.00091 * 28 12 11 51 51 H 1.09002 * 109.47153 * 300.00242 * 29 8 7 52 52 H 1.09001 * 109.47289 * 60.00326 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 0.2204 2.4258 0.0006 7 7 2.1105 3.5929 0.0011 8 6 1.3781 4.8616 0.0011 9 1 0.4671 4.7553 0.5901 10 6 2.2550 5.9568 0.6113 11 6 1.4898 7.2817 0.6119 12 6 1.1261 7.6612 -0.8250 13 1 2.0368 7.7678 -1.4143 14 6 0.3614 8.9863 -0.8245 15 7 0.1167 9.4109 -2.2093 16 6 -0.6167 10.6832 -2.2481 17 6 -0.8493 11.0856 -3.6817 18 8 -0.4436 10.3819 -4.5825 19 7 -1.5072 12.2278 -3.9628 20 6 -1.7183 12.5940 -5.2670 21 1 -1.3578 11.9670 -6.0690 22 6 -2.3971 13.7713 -5.5568 23 7 -2.8362 14.5339 -4.5808 24 14 -2.6854 14.2700 -7.3338 25 1 -3.4799 13.2196 -8.0200 26 1 -3.4262 15.5564 -7.3729 27 1 -1.3788 14.4305 -8.0211 28 6 0.2491 6.5660 -1.4353 29 6 1.0148 5.2407 -1.4359 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 2.0469 -0.9353 -0.0004 34 1 4.0428 1.1514 1.0270 35 1 4.0421 0.2618 -0.5148 36 1 4.0421 2.0418 -0.5143 37 1 3.0805 3.5928 0.0015 38 1 3.1659 6.0631 0.0223 39 1 2.5138 5.6867 1.6351 40 1 0.5791 7.1751 1.2012 41 1 2.1148 8.0621 1.0462 42 1 -0.5910 8.8561 -0.3108 43 1 0.9508 9.7456 -0.3105 44 1 0.9812 9.4764 -2.7256 45 1 -1.5759 10.5651 -1.7440 46 1 -0.0338 11.4541 -1.7440 47 1 -1.8313 12.7907 -3.2424 48 1 -3.3097 15.3559 -4.7832 49 1 -0.0097 6.8361 -2.4591 50 1 -0.6616 6.4594 -0.8459 51 1 1.9257 5.3471 -2.0250 52 1 0.3899 4.4606 -1.8707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717118787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:40 Heat of formation + Delta-G solvation = -107.221539 kcal Electronic energy + Delta-G solvation = -28603.304023 eV Core-core repulsion = 24600.722430 eV Total energy + Delta-G solvation = -4002.581593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24475 -40.20632 -39.52382 -36.96540 -35.96851 -35.83192 -34.94177 -33.26945 -31.79062 -31.68040 -30.45494 -28.38909 -26.50136 -25.79229 -24.72544 -23.74852 -23.08482 -21.77773 -21.26787 -20.90750 -20.00895 -19.85000 -17.82074 -17.37710 -17.25072 -16.92975 -16.48726 -16.18825 -16.03580 -15.65014 -15.32244 -15.31173 -15.13229 -14.95871 -14.82113 -14.70426 -14.18018 -13.93877 -13.68094 -13.57166 -13.47401 -13.43449 -13.25359 -13.11824 -13.01128 -12.91345 -12.82710 -12.72794 -12.43915 -12.35219 -12.12808 -12.04172 -11.92378 -11.54706 -11.50732 -11.29242 -11.12094 -10.52903 -10.33505 -10.18036 -10.02123 -9.77093 -9.24975 -8.46955 -5.95921 0.45115 1.39440 1.41128 1.52288 2.05140 2.26297 2.28945 2.29367 2.95274 3.20190 3.54318 3.70163 3.76418 3.88458 3.93459 3.96994 4.13361 4.29795 4.36190 4.37160 4.40629 4.46845 4.52447 4.53219 4.57947 4.59185 4.62842 4.77501 4.78431 4.80562 4.83191 4.89448 4.95753 5.03114 5.05501 5.14253 5.16665 5.24581 5.26303 5.33519 5.40050 5.49021 5.52358 5.56271 5.62094 5.67652 5.91028 6.13881 6.46071 6.59965 6.63346 7.12010 7.30910 7.55841 8.11368 8.70178 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.001619 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.634308 B =17293.267963 C =17895.355512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.069 4.069 3 C -0.208 4.208 4 C -0.110 4.110 5 C 0.537 3.463 6 O -0.578 6.578 7 N -0.713 5.713 8 C 0.149 3.851 9 H 0.064 0.936 10 C -0.114 4.114 11 C -0.105 4.105 12 C -0.077 4.077 13 H 0.073 0.927 14 C 0.064 3.936 15 N -0.683 5.683 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 C -0.099 4.099 29 C -0.120 4.120 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.343 0.657 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.068 0.932 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.376 -23.667 17.196 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.211 4.211 4 C -0.167 4.167 5 C 0.327 3.673 6 O -0.460 6.460 7 N -0.365 5.365 8 C 0.045 3.955 9 H 0.083 0.917 10 C -0.152 4.152 11 C -0.143 4.143 12 C -0.095 4.095 13 H 0.091 0.909 14 C -0.064 4.064 15 N -0.315 5.315 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.138 4.138 29 C -0.159 4.159 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.162 0.838 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.133 -24.299 16.546 32.618 hybrid contribution 0.186 1.380 -0.541 1.494 sum 14.319 -22.919 16.005 31.408 Atomic orbital electron populations 1.20950 0.93191 1.01508 1.02125 1.23908 0.96456 0.97976 0.90506 1.21690 0.98080 0.91950 1.09424 1.20804 0.88340 1.04015 1.03493 1.19015 0.87091 0.85490 0.75663 1.90788 1.15501 1.88190 1.51553 1.45977 1.10915 1.04957 1.74630 1.20921 0.95723 0.82996 0.95892 0.91746 1.21723 0.98454 0.93116 1.01862 1.21471 1.00811 0.96943 0.95073 1.21115 0.98063 0.93089 0.97270 0.90888 1.22105 1.00184 0.96242 0.87880 1.60062 1.27272 1.29656 1.14503 1.21518 1.00916 0.92030 0.92222 1.20926 0.82415 0.82086 0.92134 1.90485 1.56225 1.54583 1.49730 1.41932 1.50396 1.20628 1.08106 1.19643 1.35719 1.06449 0.84810 0.90377 1.26048 0.95912 0.95416 1.03863 1.69670 1.38336 1.14447 1.33593 0.84983 0.78563 0.77688 0.77046 1.19878 1.19366 1.19609 1.21360 0.97878 0.93483 1.01048 1.21840 1.00269 0.96817 0.96936 0.91018 0.92137 0.92519 0.82674 0.89892 0.89797 0.91028 0.74974 0.89930 0.89838 0.91672 0.89641 0.91045 0.93745 0.83844 0.88224 0.91531 0.76973 0.91278 0.92879 0.93058 0.91288 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.45 71.24 0.60 -1.51 16 2 C -0.07 -0.90 9.95 24.52 0.24 -0.66 16 3 C -0.21 -2.91 6.00 -18.71 -0.11 -3.02 16 4 C -0.11 -0.69 9.61 71.23 0.68 0.00 16 5 C 0.54 10.99 7.68 86.57 0.67 11.66 16 6 O -0.58 -16.63 12.73 -4.08 -0.05 -16.68 16 7 N -0.71 -10.98 5.02 -446.15 -2.24 -13.22 16 8 C 0.15 2.65 2.45 44.99 0.11 2.76 16 9 H 0.06 1.47 7.58 -2.39 -0.02 1.45 16 10 C -0.11 -1.34 5.39 30.60 0.16 -1.18 16 11 C -0.10 -1.44 5.20 30.59 0.16 -1.28 16 12 C -0.08 -1.48 2.33 -10.80 -0.03 -1.51 16 13 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 14 C 0.06 1.47 5.07 86.30 0.44 1.90 16 15 N -0.68 -21.74 5.58 -517.93 -2.89 -24.63 16 16 C 0.07 2.30 6.17 85.56 0.53 2.83 16 17 C 0.44 21.30 7.82 87.66 0.69 21.98 16 18 O -0.62 -35.40 15.78 -3.06 -0.05 -35.45 16 19 N -0.57 -30.06 5.29 -306.98 -1.62 -31.68 16 20 C -0.34 -19.50 9.68 84.04 0.81 -18.68 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C -0.10 -2.40 5.09 30.61 0.16 -2.24 16 29 C -0.12 -2.62 5.50 30.61 0.17 -2.45 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.29 7.22 -2.38 -0.02 1.27 16 32 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 33 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.08 0.33 8.07 -2.39 -0.02 0.31 16 36 H 0.07 0.34 6.71 -2.39 -0.02 0.33 16 37 H 0.41 3.73 6.70 -92.71 -0.62 3.11 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.34 11.40 8.43 -89.69 -0.76 10.64 16 45 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 48 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 49 H 0.05 1.60 7.75 -2.39 -0.02 1.58 16 50 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -74.83 415.31 0.02 -74.81 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -1.18 Total: 42.81 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.75 Total: 8.39 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -6.47 Total: -119.43 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.10 Total: -52.13 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.83 0.02 -74.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717118787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.412 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds