Wall clock time and date at job start Tue Mar 31 2020 20:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50705 * 119.99847 * 2 1 4 4 H 1.08993 * 109.46902 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46940 * 239.99936 * 3 2 1 6 6 C 1.53000 * 109.46835 * 65.00311 * 5 3 2 7 7 C 1.53000 * 109.46750 * 120.00208 * 3 2 1 8 8 C 1.50706 * 109.46655 * 184.99759 * 7 3 2 9 9 O 1.21274 * 120.00034 * 0.02562 * 8 7 3 10 10 N 1.34775 * 119.99541 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99693 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46660 * 35.00912 * 11 10 8 13 13 C 1.52997 * 109.47289 * 275.00198 * 11 10 8 14 14 C 1.52999 * 109.46684 * 155.00124 * 11 10 8 15 15 C 1.53935 * 113.73706 * 278.76566 * 14 11 10 16 16 N 1.48191 * 86.10378 * 221.96142 * 15 14 11 17 17 C 1.46897 * 111.07024 * 137.52289 * 16 15 14 18 18 C 1.50701 * 109.47261 * 90.56569 * 17 16 15 19 19 O 1.21285 * 119.99914 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99526 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99449 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00234 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99975 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99802 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00214 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47077 * 90.00198 * 25 23 21 27 27 H 1.48499 * 109.47220 * 210.00304 * 25 23 21 28 28 H 1.48502 * 109.47081 * 330.00253 * 25 23 21 29 29 C 1.47965 * 90.79896 * 24.59944 * 16 15 14 30 30 H 1.08002 * 119.99625 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99751 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00063 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46943 * 185.00151 * 5 3 2 34 34 H 1.08995 * 109.47299 * 305.00433 * 5 3 2 35 35 H 1.08999 * 109.47175 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.47225 * 299.99668 * 6 5 3 37 37 H 1.09005 * 109.47617 * 59.99994 * 6 5 3 38 38 H 1.09002 * 109.47150 * 65.00613 * 7 3 2 39 39 H 1.08999 * 109.47446 * 304.99484 * 7 3 2 40 40 H 0.97000 * 120.00190 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 43 43 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 44 44 H 1.09000 * 112.94154 * 50.33842 * 14 11 10 45 45 H 1.09001 * 113.75668 * 336.24161 * 15 14 11 46 46 H 1.08999 * 113.75914 * 107.60648 * 15 14 11 47 47 H 1.09001 * 109.47074 * 210.56793 * 17 16 15 48 48 H 1.09006 * 109.46942 * 330.56332 * 17 16 15 49 49 H 0.96995 * 120.00320 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99742 * 179.97438 * 24 23 21 51 51 H 1.08997 * 113.75774 * 221.08967 * 29 16 15 52 52 H 1.08998 * 113.75496 * 89.72100 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7400 1.3127 9 8 3.3887 3.5595 0.4445 10 7 4.4276 3.0404 2.3348 11 6 5.0686 4.3564 2.3962 12 1 4.3874 5.1109 2.0029 13 6 6.3493 4.3394 1.5593 14 6 5.4132 4.6883 3.8494 15 6 4.2235 5.2346 4.6592 16 7 5.1862 6.2086 5.2252 17 6 4.5957 7.5516 5.3010 18 6 3.9258 7.7310 6.6389 19 8 3.9393 6.8290 7.4497 20 7 3.3125 8.8941 6.9348 21 6 2.7035 9.0575 8.1522 22 1 2.7155 8.2543 8.8742 23 6 2.0707 10.2564 8.4572 24 7 2.0557 11.2334 7.5785 25 14 1.2402 10.4788 10.1156 26 1 2.2164 11.0336 11.0875 27 1 0.0957 11.4144 9.9745 28 1 0.7485 9.1651 10.6030 29 6 6.0524 6.0767 4.0329 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5540 2.2878 -1.2056 34 1 3.5906 0.5105 -1.2952 35 1 2.6830 1.4890 -3.3852 36 1 1.4455 0.5291 -2.5389 37 1 1.4089 2.3065 -2.4494 38 1 3.7086 0.6113 1.2055 39 1 2.3280 1.2395 2.1370 40 1 4.5980 2.3851 3.0293 41 1 6.8259 5.3187 1.6047 42 1 6.1037 4.1029 0.5240 43 1 7.0304 3.5848 1.9527 44 1 5.9544 3.8865 4.3515 45 1 3.4469 5.6908 4.0452 46 1 3.8293 4.5292 5.3907 47 1 5.3793 8.3001 5.1838 48 1 3.8586 7.6698 4.5067 49 1 3.3021 9.6155 6.2866 50 1 1.6136 12.0703 7.7912 51 1 7.1168 6.0429 4.2650 52 1 5.8119 6.7798 3.2354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717557459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:58 Heat of formation + Delta-G solvation = -35.952644 kcal Electronic energy + Delta-G solvation = -28919.030972 eV Core-core repulsion = 24919.539830 eV Total energy + Delta-G solvation = -3999.491142 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61436 -39.70796 -37.81396 -37.08341 -35.30736 -33.85413 -32.07724 -32.00005 -31.20974 -30.28172 -29.28429 -26.32387 -25.55213 -25.06490 -23.97800 -22.27840 -21.65643 -20.67398 -19.93538 -19.55216 -19.14180 -17.86282 -17.15253 -16.72366 -16.07395 -15.62418 -15.33699 -15.22376 -15.07755 -14.81747 -14.69894 -14.36901 -14.12773 -13.74654 -13.63547 -13.53113 -13.15505 -13.08563 -12.89357 -12.59399 -12.53694 -12.31736 -12.19041 -11.84892 -11.60185 -11.48908 -11.43201 -11.35741 -11.06170 -11.01614 -10.94683 -10.88828 -10.66176 -10.63367 -10.37614 -10.18737 -9.86640 -9.63103 -9.47245 -9.27569 -8.68556 -8.14081 -7.92940 -6.38736 -3.79417 1.94863 2.46596 2.95669 3.19546 3.27693 3.33649 3.90759 3.96442 4.22071 4.29780 4.39994 4.43987 4.55591 4.70911 4.84427 4.93571 4.98454 5.03267 5.04502 5.11263 5.17685 5.21934 5.23031 5.25563 5.38850 5.44106 5.45655 5.52853 5.54415 5.64593 5.66208 5.70632 5.70884 5.76826 5.78434 5.85594 5.92162 6.02143 6.06220 6.10925 6.18030 6.30654 6.31210 6.37477 6.48095 6.60406 7.19545 7.30569 7.57750 8.05508 8.09228 8.65559 9.21507 9.58191 10.10736 10.79201 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.001951 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.862890 B =14348.812383 C =15458.659643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.148 4.148 7 C -0.136 4.136 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.725 5.725 11 C 0.150 3.850 12 H 0.088 0.912 13 C -0.160 4.160 14 C -0.125 4.125 15 C 0.018 3.982 16 N -0.450 5.450 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.010 3.990 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -20.109 -18.581 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.165 4.165 3 C -0.065 4.065 4 H 0.101 0.899 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.175 4.175 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.376 5.376 11 C 0.045 3.955 12 H 0.106 0.894 13 C -0.219 4.219 14 C -0.144 4.144 15 C -0.111 4.111 16 N -0.172 5.172 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.120 4.120 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.109 0.891 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.515 -19.999 -17.970 27.263 hybrid contribution -0.755 0.628 0.065 0.984 sum 3.760 -19.370 -17.905 26.644 Atomic orbital electron populations 1.23889 0.95980 1.01894 1.00947 1.22913 0.95920 0.97933 0.99771 1.20159 0.96915 0.95789 0.93612 0.89921 1.21648 0.98036 1.02697 0.93435 1.21729 0.99797 1.01635 0.97382 1.21714 1.00262 0.94986 1.00587 1.20680 0.78440 0.89582 0.81271 1.90680 1.62152 1.50323 1.38203 1.46117 1.47761 1.16936 1.26787 1.21039 0.94498 0.85163 0.94818 0.89400 1.22130 0.97055 1.02484 1.00199 1.23316 0.98643 0.98555 0.93928 1.24009 0.94168 0.96250 0.96654 1.68407 1.11431 1.05006 1.32319 1.22479 0.99150 0.92869 0.97729 1.19693 0.84157 0.84186 0.88768 1.90512 1.63311 1.41805 1.50308 1.41882 1.48588 1.13304 1.16732 1.19690 1.29866 1.00274 0.92872 0.87992 1.25258 0.98059 0.95270 0.99487 1.69617 1.44575 1.05107 1.35173 0.85861 0.78608 0.78295 0.81532 1.20420 1.20957 1.19462 1.23952 0.99939 0.94921 0.93161 0.88520 0.88540 0.87464 0.89823 0.92716 0.93109 0.92975 0.92761 0.88849 0.88669 0.76541 0.91397 0.92247 0.92409 0.87855 0.91453 0.89162 0.89431 0.92484 0.77561 0.91931 0.89115 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 14.32 29.01 0.42 -0.86 16 2 C -0.15 -0.99 7.75 -36.02 -0.28 -1.27 16 3 C -0.05 -0.36 1.80 -91.77 -0.17 -0.53 16 4 H 0.08 0.81 7.60 -51.93 -0.39 0.41 16 5 C -0.12 -1.00 5.18 -26.73 -0.14 -1.14 16 6 C -0.15 -1.17 9.73 37.16 0.36 -0.81 16 7 C -0.14 -0.93 5.16 -27.88 -0.14 -1.07 16 8 C 0.51 4.94 7.47 -10.98 -0.08 4.86 16 9 O -0.54 -7.09 13.65 5.56 0.08 -7.01 16 10 N -0.72 -5.96 5.08 -53.80 -0.27 -6.24 16 11 C 0.15 1.41 2.38 -67.93 -0.16 1.25 16 12 H 0.09 1.03 7.41 -51.93 -0.39 0.65 16 13 C -0.16 -1.35 9.31 37.16 0.35 -1.00 16 14 C -0.13 -1.29 3.46 -89.68 -0.31 -1.60 16 15 C 0.02 0.26 7.53 -2.63 -0.02 0.24 16 16 N -0.45 -7.38 5.65 -239.49 -1.35 -8.73 16 17 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.87 7.83 -10.99 -0.09 10.78 16 19 O -0.58 -16.12 16.01 5.55 0.09 -16.03 16 20 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 25 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.01 0.11 6.65 -2.75 -0.02 0.10 16 30 H 0.10 0.68 7.83 -52.49 -0.41 0.27 16 31 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.08 0.87 5.88 -51.93 -0.31 0.57 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.38 7.38 -51.93 -0.38 0.00 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.40 2.38 8.60 -40.82 -0.35 2.02 16 41 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.97 7.33 -51.93 -0.38 0.58 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 48 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 49 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 51 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 422.42 15.07 6.37 6.37 Total: -1.00 -33.94 422.42 -9.12 -43.06 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -9.12 Total: 10.30 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.55 Total: 0.97 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.96 Total: -53.99 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.16 Total: -23.05 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.94 -9.12 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.108 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds