Wall clock time and date at job start Tue Mar 31 2020 20:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50705 * 119.99847 * 2 1 4 4 H 1.08993 * 109.46902 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46940 * 239.99936 * 3 2 1 6 6 C 1.53000 * 109.46835 * 65.00311 * 5 3 2 7 7 C 1.53000 * 109.46750 * 120.00208 * 3 2 1 8 8 C 1.50706 * 109.46655 * 184.99759 * 7 3 2 9 9 O 1.21274 * 120.00034 * 0.02562 * 8 7 3 10 10 N 1.34775 * 119.99541 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99693 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46660 * 35.00912 * 11 10 8 13 13 C 1.52997 * 109.47289 * 275.00198 * 11 10 8 14 14 C 1.52999 * 109.46684 * 155.00124 * 11 10 8 15 15 C 1.53935 * 113.73706 * 278.76566 * 14 11 10 16 16 N 1.48191 * 86.10378 * 221.96142 * 15 14 11 17 17 C 1.46897 * 111.07024 * 137.52289 * 16 15 14 18 18 C 1.50701 * 109.47261 * 90.56569 * 17 16 15 19 19 O 1.21285 * 119.99914 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99526 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99449 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00234 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99975 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99802 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00214 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47077 * 90.00198 * 25 23 21 27 27 H 1.48499 * 109.47220 * 210.00304 * 25 23 21 28 28 H 1.48502 * 109.47081 * 330.00253 * 25 23 21 29 29 C 1.47965 * 90.79896 * 24.59944 * 16 15 14 30 30 H 1.08002 * 119.99625 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99751 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00063 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.46943 * 185.00151 * 5 3 2 34 34 H 1.08995 * 109.47299 * 305.00433 * 5 3 2 35 35 H 1.08999 * 109.47175 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.47225 * 299.99668 * 6 5 3 37 37 H 1.09005 * 109.47617 * 59.99994 * 6 5 3 38 38 H 1.09002 * 109.47150 * 65.00613 * 7 3 2 39 39 H 1.08999 * 109.47446 * 304.99484 * 7 3 2 40 40 H 0.97000 * 120.00190 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 43 43 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 44 44 H 1.09000 * 112.94154 * 50.33842 * 14 11 10 45 45 H 1.09001 * 113.75668 * 336.24161 * 15 14 11 46 46 H 1.08999 * 113.75914 * 107.60648 * 15 14 11 47 47 H 1.09001 * 109.47074 * 210.56793 * 17 16 15 48 48 H 1.09006 * 109.46942 * 330.56332 * 17 16 15 49 49 H 0.96995 * 120.00320 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99742 * 179.97438 * 24 23 21 51 51 H 1.08997 * 113.75774 * 221.08967 * 29 16 15 52 52 H 1.08998 * 113.75496 * 89.72100 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7400 1.3127 9 8 3.3887 3.5595 0.4445 10 7 4.4276 3.0404 2.3348 11 6 5.0686 4.3564 2.3962 12 1 4.3874 5.1109 2.0029 13 6 6.3493 4.3394 1.5593 14 6 5.4132 4.6883 3.8494 15 6 4.2235 5.2346 4.6592 16 7 5.1862 6.2086 5.2252 17 6 4.5957 7.5516 5.3010 18 6 3.9258 7.7310 6.6389 19 8 3.9393 6.8290 7.4497 20 7 3.3125 8.8941 6.9348 21 6 2.7035 9.0575 8.1522 22 1 2.7155 8.2543 8.8742 23 6 2.0707 10.2564 8.4572 24 7 2.0557 11.2334 7.5785 25 14 1.2402 10.4788 10.1156 26 1 2.2164 11.0336 11.0875 27 1 0.0957 11.4144 9.9745 28 1 0.7485 9.1651 10.6030 29 6 6.0524 6.0767 4.0329 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5540 2.2878 -1.2056 34 1 3.5906 0.5105 -1.2952 35 1 2.6830 1.4890 -3.3852 36 1 1.4455 0.5291 -2.5389 37 1 1.4089 2.3065 -2.4494 38 1 3.7086 0.6113 1.2055 39 1 2.3280 1.2395 2.1370 40 1 4.5980 2.3851 3.0293 41 1 6.8259 5.3187 1.6047 42 1 6.1037 4.1029 0.5240 43 1 7.0304 3.5848 1.9527 44 1 5.9544 3.8865 4.3515 45 1 3.4469 5.6908 4.0452 46 1 3.8293 4.5292 5.3907 47 1 5.3793 8.3001 5.1838 48 1 3.8586 7.6698 4.5067 49 1 3.3021 9.6155 6.2866 50 1 1.6136 12.0703 7.7912 51 1 7.1168 6.0429 4.2650 52 1 5.8119 6.7798 3.2354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717557459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:57 Heat of formation + Delta-G solvation = -60.538967 kcal Electronic energy + Delta-G solvation = -28920.097115 eV Core-core repulsion = 24919.539830 eV Total energy + Delta-G solvation = -4000.557285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57477 -40.70029 -39.60953 -37.77670 -36.23345 -35.87963 -33.33664 -32.81316 -32.64226 -31.21493 -30.24683 -27.60034 -26.94199 -25.92083 -25.29566 -23.10278 -22.49243 -21.45344 -20.99365 -20.54385 -20.39748 -19.89523 -17.97719 -17.79181 -17.55640 -16.63044 -16.56591 -16.37687 -16.15009 -15.91613 -15.73103 -15.59279 -15.30546 -14.99522 -14.79224 -14.39666 -14.22319 -14.02474 -13.80175 -13.68402 -13.56023 -13.52136 -13.20648 -12.99255 -12.81754 -12.68775 -12.64843 -12.43991 -12.14449 -12.08427 -12.03350 -11.82540 -11.77621 -11.65490 -11.62389 -11.51719 -11.50044 -10.63097 -10.39010 -10.18592 -10.05881 -10.02665 -9.60810 -8.47944 -5.97008 1.36644 1.39774 1.42710 1.52963 1.73272 2.04115 2.25337 2.28138 2.77430 3.17937 3.31171 3.46335 3.64526 3.75831 3.83615 4.10911 4.12406 4.17883 4.22677 4.25660 4.35984 4.40806 4.43050 4.43845 4.47437 4.51164 4.52959 4.59681 4.65481 4.76464 4.79825 4.83859 4.87156 4.97658 5.02819 5.06259 5.11881 5.20503 5.22538 5.33680 5.38776 5.42933 5.43320 5.47440 5.62264 5.78398 5.89167 5.96432 6.07881 6.59127 6.64361 7.11449 7.35996 7.54877 8.11195 8.69567 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.001951 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.862890 B =14348.812383 C =15458.659643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.055 0.945 5 C -0.118 4.118 6 C -0.147 4.147 7 C -0.129 4.129 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.716 5.716 11 C 0.156 3.844 12 H 0.063 0.937 13 C -0.153 4.153 14 C -0.097 4.097 15 C 0.010 3.990 16 N -0.483 5.483 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.015 3.985 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.414 0.586 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.108 0.892 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -21.434 -18.940 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.162 4.162 3 C -0.064 4.064 4 H 0.073 0.927 5 C -0.155 4.155 6 C -0.204 4.204 7 C -0.169 4.169 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.368 5.368 11 C 0.051 3.949 12 H 0.081 0.919 13 C -0.211 4.211 14 C -0.116 4.116 15 C -0.119 4.119 16 N -0.205 5.205 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.113 4.113 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.126 0.874 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.517 -21.327 -18.338 28.663 hybrid contribution -1.055 1.034 0.152 1.485 sum 4.462 -20.293 -18.185 27.612 Atomic orbital electron populations 1.23992 0.96239 1.02104 1.01029 1.22943 0.95833 0.97825 0.99646 1.20100 0.96628 0.95647 0.94066 0.92668 1.21594 0.98021 1.02207 0.93703 1.21716 0.99736 1.01334 0.97616 1.21734 1.00762 0.93908 1.00478 1.21192 0.78130 0.90223 0.80744 1.90672 1.63520 1.51758 1.39807 1.46047 1.47194 1.16759 1.26849 1.20866 0.94697 0.85218 0.94168 0.91858 1.22063 0.96482 1.03526 0.99078 1.23124 0.96170 0.98514 0.93774 1.24017 0.95161 0.95935 0.96745 1.68374 1.12719 1.04015 1.35406 1.22349 0.99673 0.94931 0.93918 1.20811 0.82913 0.82823 0.90552 1.90471 1.64580 1.42946 1.52367 1.41973 1.49060 1.14146 1.16297 1.19655 1.32174 1.00535 0.93917 0.90421 1.26074 0.97938 0.94468 1.03002 1.69680 1.44581 1.05411 1.36570 0.84912 0.77951 0.78159 0.77209 1.19522 1.19469 1.19787 1.24072 1.00117 0.95645 0.91490 0.89604 0.87151 0.85536 0.92175 0.91068 0.92632 0.92130 0.94236 0.86060 0.87465 0.74918 0.90609 0.93597 0.90746 0.86164 0.92090 0.90934 0.87400 0.90884 0.77109 0.91304 0.87381 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 14.32 67.78 0.97 -1.48 16 2 C -0.14 -1.70 7.75 25.64 0.20 -1.50 16 3 C -0.05 -0.69 1.80 -11.54 -0.02 -0.71 16 4 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 5 C -0.12 -1.88 5.18 30.59 0.16 -1.73 16 6 C -0.15 -2.30 9.73 71.98 0.70 -1.60 16 7 C -0.13 -1.57 5.16 29.85 0.15 -1.41 16 8 C 0.51 9.47 7.47 87.66 0.65 10.12 16 9 O -0.58 -15.64 13.65 -3.01 -0.04 -15.69 16 10 N -0.72 -10.75 5.08 -442.53 -2.25 -13.00 16 11 C 0.16 2.73 2.38 44.99 0.11 2.83 16 12 H 0.06 1.47 7.41 -2.39 -0.02 1.45 16 13 C -0.15 -2.25 9.31 71.98 0.67 -1.58 16 14 C -0.10 -1.80 3.46 -10.14 -0.04 -1.84 16 15 C 0.01 0.29 7.53 86.37 0.65 0.94 16 16 N -0.48 -15.39 5.65 -911.60 -5.15 -20.54 16 17 C 0.02 0.82 5.28 85.56 0.45 1.28 16 18 C 0.44 21.91 7.83 87.66 0.69 22.60 16 19 O -0.62 -35.63 16.01 -3.04 -0.05 -35.68 16 20 N -0.58 -30.66 5.29 -306.99 -1.62 -32.28 16 21 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.92 -50.75 13.05 21.66 0.28 -50.46 16 25 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.02 0.32 6.65 86.41 0.57 0.90 16 30 H 0.09 1.23 7.83 -2.91 -0.02 1.21 16 31 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.13 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.06 1.27 5.88 -2.39 -0.01 1.26 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.83 7.38 -2.39 -0.02 0.81 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.41 3.95 8.60 -92.71 -0.80 3.15 16 41 H 0.08 1.00 7.52 -2.39 -0.02 0.98 16 42 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 47 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 48 H 0.07 2.37 7.39 -2.38 -0.02 2.35 16 49 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 50 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 51 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 Total: -1.00 -76.04 422.42 -0.22 -76.26 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.62 Total: 37.77 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 7.20 Total: 7.83 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -8.74 Total: -116.28 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -76.04 -0.22 -76.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds