Wall clock time and date at job start Tue Mar 31 2020 20:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99991 * 2 1 4 4 H 1.09004 * 109.47232 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.47303 * 120.00028 * 3 2 1 6 6 C 1.53001 * 109.47338 * 294.75406 * 5 3 2 7 7 C 1.53002 * 109.46929 * 240.00189 * 3 2 1 8 8 C 1.50703 * 109.46925 * 174.01396 * 7 3 2 9 9 O 1.21274 * 120.00135 * 353.87665 * 8 7 3 10 10 N 1.34785 * 119.99807 * 173.87351 * 8 7 3 11 11 C 1.46496 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46958 * 34.99613 * 11 10 8 13 13 C 1.53001 * 109.47044 * 274.99963 * 11 10 8 14 14 C 1.52998 * 109.47310 * 155.00041 * 11 10 8 15 15 C 1.53939 * 113.73114 * 278.76653 * 14 11 10 16 16 N 1.48189 * 86.09918 * 221.95675 * 15 14 11 17 17 C 1.46898 * 111.07194 * 137.52083 * 16 15 14 18 18 C 1.50700 * 109.47178 * 90.56652 * 17 16 15 19 19 O 1.21298 * 120.00063 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00264 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00189 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00216 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99885 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00377 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46951 * 89.99915 * 25 23 21 27 27 H 1.48496 * 109.47325 * 209.99859 * 25 23 21 28 28 H 1.48501 * 109.47096 * 330.00240 * 25 23 21 29 29 C 1.47957 * 90.80251 * 24.59886 * 16 15 14 30 30 H 1.08008 * 120.00441 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00197 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99630 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47498 * 174.75406 * 5 3 2 34 34 H 1.09000 * 109.47041 * 54.75482 * 5 3 2 35 35 H 1.08999 * 109.47413 * 175.25735 * 6 5 3 36 36 H 1.08997 * 109.46655 * 55.26224 * 6 5 3 37 37 H 1.09001 * 109.47075 * 295.26265 * 6 5 3 38 38 H 1.09000 * 109.46896 * 294.01282 * 7 3 2 39 39 H 1.09001 * 109.47344 * 54.01777 * 7 3 2 40 40 H 0.97005 * 120.00028 * 359.97438 * 10 8 7 41 41 H 1.08997 * 109.47421 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.47204 * 299.99783 * 13 11 10 43 43 H 1.09000 * 109.47574 * 59.99898 * 13 11 10 44 44 H 1.08999 * 112.94068 * 50.32553 * 14 11 10 45 45 H 1.08994 * 113.75996 * 336.23517 * 15 14 11 46 46 H 1.09001 * 113.76210 * 107.60509 * 15 14 11 47 47 H 1.09004 * 109.47415 * 210.56474 * 17 16 15 48 48 H 1.09003 * 109.47502 * 330.56578 * 17 16 15 49 49 H 0.97000 * 119.99628 * 359.97438 * 20 18 17 50 50 H 0.97003 * 120.00447 * 180.02562 * 24 23 21 51 51 H 1.08994 * 113.76172 * 221.08724 * 29 16 15 52 52 H 1.09006 * 113.75814 * 89.71514 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2491 6 6 2.0563 1.4369 2.4950 7 6 2.9430 1.3861 -1.2493 8 6 3.5829 2.7484 -1.3256 9 8 3.2729 3.6093 -0.5297 10 7 4.4996 3.0099 -2.2784 11 6 5.1221 4.3340 -2.3523 12 1 5.2499 4.7320 -1.3457 13 6 4.2269 5.2738 -3.1624 14 6 6.4877 4.2184 -3.0324 15 6 7.6108 3.7474 -2.0908 16 7 8.4534 4.7751 -2.7466 17 6 9.2642 5.5014 -1.7602 18 6 10.5891 4.8043 -1.5880 19 8 10.8337 3.8009 -2.2240 20 7 11.5020 5.2953 -0.7265 21 6 12.7071 4.6609 -0.5694 22 1 12.9252 3.7679 -1.1363 23 6 13.6483 5.1674 0.3184 24 7 13.3832 6.2542 1.0079 25 14 15.2907 4.3034 0.5320 26 1 16.2710 4.8574 -0.4362 27 1 15.7863 4.5171 1.9154 28 1 15.1205 2.8488 0.2863 29 6 7.2511 5.5523 -3.1202 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 3.5571 2.2856 1.2034 34 1 3.5874 0.5083 1.2974 35 1 2.6815 1.4097 3.3874 36 1 1.3831 0.5797 2.4968 37 1 1.4725 2.3574 2.4882 38 1 3.7191 0.6225 -1.1973 39 1 2.3307 1.2221 -2.1361 40 1 4.7478 2.3211 -2.9148 41 1 4.6901 6.2589 -3.2178 42 1 4.0990 4.8758 -4.1691 43 1 3.2539 5.3562 -2.6780 44 1 6.4480 3.6727 -3.9751 45 1 7.4138 3.9478 -1.0377 46 1 7.9394 2.7248 -2.2761 47 1 9.4324 6.5207 -2.1079 48 1 8.7393 5.5253 -0.8052 49 1 11.3062 6.0976 -0.2176 50 1 14.0405 6.6081 1.6274 51 1 7.2927 5.9689 -4.1265 52 1 6.9486 6.2816 -2.3687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717557460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:01 Heat of formation + Delta-G solvation = -36.731289 kcal Electronic energy + Delta-G solvation = -28999.423716 eV Core-core repulsion = 24999.898809 eV Total energy + Delta-G solvation = -3999.524906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60961 -39.69870 -37.81120 -37.09128 -35.30816 -33.85369 -32.09245 -31.97216 -31.20914 -30.27867 -29.28393 -26.32528 -25.55267 -25.06388 -23.97211 -22.26433 -21.66405 -20.66382 -19.92724 -19.55205 -19.14133 -17.86274 -17.15389 -16.69005 -16.07270 -15.72574 -15.33144 -15.22767 -14.94643 -14.78981 -14.72587 -14.42068 -14.12077 -13.74713 -13.60932 -13.54989 -13.17862 -13.00429 -12.91865 -12.60078 -12.54965 -12.33929 -12.12455 -11.86779 -11.60472 -11.48955 -11.41690 -11.35338 -11.06719 -10.99416 -10.93837 -10.83133 -10.66255 -10.62545 -10.37672 -10.18773 -9.92979 -9.65117 -9.47284 -9.27303 -8.68522 -8.14086 -7.92988 -6.38767 -3.79484 1.92994 2.46967 2.95763 3.19482 3.27657 3.33573 3.90770 3.96304 4.21996 4.29462 4.41504 4.43114 4.55199 4.70958 4.84159 4.93526 4.98903 5.03536 5.07003 5.14805 5.17988 5.21343 5.23428 5.26067 5.39102 5.44527 5.45766 5.51615 5.53914 5.66180 5.66832 5.70783 5.71186 5.76838 5.78489 5.90478 5.92276 6.02308 6.09168 6.11781 6.17343 6.30158 6.30877 6.36927 6.46645 6.60377 7.19507 7.30679 7.57672 8.05490 8.09167 8.65500 9.21455 9.58129 10.10685 10.79145 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.002046 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.045432 B =13679.309936 C =15010.484403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.083 0.917 5 C -0.120 4.120 6 C -0.149 4.149 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.725 5.725 11 C 0.150 3.850 12 H 0.088 0.912 13 C -0.160 4.160 14 C -0.125 4.125 15 C 0.018 3.982 16 N -0.450 5.450 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.010 3.990 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.813 -6.831 -4.370 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.101 0.899 5 C -0.157 4.157 6 C -0.206 4.206 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.376 5.376 11 C 0.045 3.955 12 H 0.106 0.894 13 C -0.219 4.219 14 C -0.144 4.144 15 C -0.111 4.111 16 N -0.172 5.172 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.120 4.120 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.235 0.765 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.109 0.891 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.238 -6.962 -4.564 26.575 hybrid contribution 0.458 0.115 0.848 0.971 sum -24.779 -6.847 -3.716 25.975 Atomic orbital electron populations 1.23864 0.95955 1.01789 1.01368 1.22937 0.95921 0.98047 0.99357 1.20163 0.96948 0.95744 0.93642 0.89851 1.21604 0.97988 1.02668 0.93477 1.21735 0.99790 1.01614 0.97465 1.21719 1.00421 0.95015 1.00401 1.20675 0.79085 0.90038 0.80158 1.90694 1.61960 1.48247 1.40522 1.46118 1.42626 1.15019 1.33854 1.21036 0.91144 0.82950 1.00377 0.89405 1.22131 1.00149 0.99552 1.00054 1.23316 0.92181 0.98694 1.00252 1.24007 0.91286 0.99332 0.96441 1.68405 1.11118 1.07286 1.30351 1.22477 0.95846 0.98638 0.95252 1.19698 0.85747 0.87408 0.83964 1.90515 1.79506 1.26884 1.49042 1.41881 1.14558 1.26731 1.37321 1.19688 0.91040 1.09819 1.22167 0.87991 1.25254 0.99989 0.96454 0.96354 1.69613 1.36414 1.21571 1.26866 0.85862 0.81434 0.79651 0.77361 1.20421 1.20960 1.19462 1.23950 0.90646 0.95020 1.02358 0.88617 0.88558 0.87361 0.90325 0.92391 0.92935 0.92880 0.92820 0.88783 0.88750 0.76540 0.91394 0.92416 0.92252 0.87855 0.91452 0.89162 0.89438 0.92484 0.77564 0.91929 0.89117 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.02 0.42 -0.79 16 2 C -0.14 -0.96 7.69 -36.03 -0.28 -1.24 16 3 C -0.05 -0.37 1.79 -91.78 -0.16 -0.53 16 4 H 0.08 0.79 7.47 -51.93 -0.39 0.40 16 5 C -0.12 -1.09 5.19 -26.74 -0.14 -1.23 16 6 C -0.15 -1.28 9.80 37.16 0.36 -0.92 16 7 C -0.14 -0.93 5.15 -27.88 -0.14 -1.08 16 8 C 0.51 4.97 7.35 -10.98 -0.08 4.89 16 9 O -0.54 -7.17 13.97 5.56 0.08 -7.09 16 10 N -0.72 -5.99 5.08 -53.81 -0.27 -6.26 16 11 C 0.15 1.42 2.38 -67.93 -0.16 1.26 16 12 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 13 C -0.16 -1.37 9.31 37.16 0.35 -1.02 16 14 C -0.13 -1.29 3.46 -89.68 -0.31 -1.60 16 15 C 0.02 0.26 7.53 -2.63 -0.02 0.24 16 16 N -0.45 -7.36 5.65 -239.52 -1.35 -8.71 16 17 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.84 7.83 -10.99 -0.09 10.76 16 19 O -0.58 -16.10 16.01 5.54 0.09 -16.01 16 20 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 C 0.01 0.11 6.65 -2.76 -0.02 0.10 16 30 H 0.10 0.60 7.83 -52.48 -0.41 0.19 16 31 H 0.10 0.50 8.06 -52.49 -0.42 0.07 16 32 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.08 0.90 6.19 -51.93 -0.32 0.58 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.42 7.24 -51.93 -0.38 0.04 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 41 H 0.07 0.54 7.51 -51.93 -0.39 0.15 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 48 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 49 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 422.67 15.07 6.37 6.37 Total: -1.00 -33.94 422.67 -9.11 -43.05 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -9.12 Total: 10.42 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.54 Total: 0.87 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.96 Total: -53.94 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.94 -9.11 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.321 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds