Wall clock time and date at job start Tue Mar 31 2020 20:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 119.99991 * 2 1 4 4 H 1.09004 * 109.47232 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.47303 * 120.00028 * 3 2 1 6 6 C 1.53001 * 109.47338 * 294.75406 * 5 3 2 7 7 C 1.53002 * 109.46929 * 240.00189 * 3 2 1 8 8 C 1.50703 * 109.46925 * 174.01396 * 7 3 2 9 9 O 1.21274 * 120.00135 * 353.87665 * 8 7 3 10 10 N 1.34785 * 119.99807 * 173.87351 * 8 7 3 11 11 C 1.46496 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46958 * 34.99613 * 11 10 8 13 13 C 1.53001 * 109.47044 * 274.99963 * 11 10 8 14 14 C 1.52998 * 109.47310 * 155.00041 * 11 10 8 15 15 C 1.53939 * 113.73114 * 278.76653 * 14 11 10 16 16 N 1.48189 * 86.09918 * 221.95675 * 15 14 11 17 17 C 1.46898 * 111.07194 * 137.52083 * 16 15 14 18 18 C 1.50700 * 109.47178 * 90.56652 * 17 16 15 19 19 O 1.21298 * 120.00063 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00264 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00189 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00216 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99885 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00377 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46951 * 89.99915 * 25 23 21 27 27 H 1.48496 * 109.47325 * 209.99859 * 25 23 21 28 28 H 1.48501 * 109.47096 * 330.00240 * 25 23 21 29 29 C 1.47957 * 90.80251 * 24.59886 * 16 15 14 30 30 H 1.08008 * 120.00441 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00197 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99630 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47498 * 174.75406 * 5 3 2 34 34 H 1.09000 * 109.47041 * 54.75482 * 5 3 2 35 35 H 1.08999 * 109.47413 * 175.25735 * 6 5 3 36 36 H 1.08997 * 109.46655 * 55.26224 * 6 5 3 37 37 H 1.09001 * 109.47075 * 295.26265 * 6 5 3 38 38 H 1.09000 * 109.46896 * 294.01282 * 7 3 2 39 39 H 1.09001 * 109.47344 * 54.01777 * 7 3 2 40 40 H 0.97005 * 120.00028 * 359.97438 * 10 8 7 41 41 H 1.08997 * 109.47421 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.47204 * 299.99783 * 13 11 10 43 43 H 1.09000 * 109.47574 * 59.99898 * 13 11 10 44 44 H 1.08999 * 112.94068 * 50.32553 * 14 11 10 45 45 H 1.08994 * 113.75996 * 336.23517 * 15 14 11 46 46 H 1.09001 * 113.76210 * 107.60509 * 15 14 11 47 47 H 1.09004 * 109.47415 * 210.56474 * 17 16 15 48 48 H 1.09003 * 109.47502 * 330.56578 * 17 16 15 49 49 H 0.97000 * 119.99628 * 359.97438 * 20 18 17 50 50 H 0.97003 * 120.00447 * 180.02562 * 24 23 21 51 51 H 1.08994 * 113.76172 * 221.08724 * 29 16 15 52 52 H 1.09006 * 113.75814 * 89.71514 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3861 1.2491 6 6 2.0563 1.4369 2.4950 7 6 2.9430 1.3861 -1.2493 8 6 3.5829 2.7484 -1.3256 9 8 3.2729 3.6093 -0.5297 10 7 4.4996 3.0099 -2.2784 11 6 5.1221 4.3340 -2.3523 12 1 5.2499 4.7320 -1.3457 13 6 4.2269 5.2738 -3.1624 14 6 6.4877 4.2184 -3.0324 15 6 7.6108 3.7474 -2.0908 16 7 8.4534 4.7751 -2.7466 17 6 9.2642 5.5014 -1.7602 18 6 10.5891 4.8043 -1.5880 19 8 10.8337 3.8009 -2.2240 20 7 11.5020 5.2953 -0.7265 21 6 12.7071 4.6609 -0.5694 22 1 12.9252 3.7679 -1.1363 23 6 13.6483 5.1674 0.3184 24 7 13.3832 6.2542 1.0079 25 14 15.2907 4.3034 0.5320 26 1 16.2710 4.8574 -0.4362 27 1 15.7863 4.5171 1.9154 28 1 15.1205 2.8488 0.2863 29 6 7.2511 5.5523 -3.1202 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 3.5571 2.2856 1.2034 34 1 3.5874 0.5083 1.2974 35 1 2.6815 1.4097 3.3874 36 1 1.3831 0.5797 2.4968 37 1 1.4725 2.3574 2.4882 38 1 3.7191 0.6225 -1.1973 39 1 2.3307 1.2221 -2.1361 40 1 4.7478 2.3211 -2.9148 41 1 4.6901 6.2589 -3.2178 42 1 4.0990 4.8758 -4.1691 43 1 3.2539 5.3562 -2.6780 44 1 6.4480 3.6727 -3.9751 45 1 7.4138 3.9478 -1.0377 46 1 7.9394 2.7248 -2.2761 47 1 9.4324 6.5207 -2.1079 48 1 8.7393 5.5253 -0.8052 49 1 11.3062 6.0976 -0.2176 50 1 14.0405 6.6081 1.6274 51 1 7.2927 5.9689 -4.1265 52 1 6.9486 6.2816 -2.3687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717557460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:00 Heat of formation + Delta-G solvation = -61.313563 kcal Electronic energy + Delta-G solvation = -29000.489683 eV Core-core repulsion = 24999.898809 eV Total energy + Delta-G solvation = -4000.590874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.57363 -40.69285 -39.60413 -37.79451 -36.23902 -35.87697 -33.33312 -32.81160 -32.65463 -31.21774 -30.25402 -27.60020 -26.94065 -25.93365 -25.29561 -23.11110 -22.51507 -21.44317 -20.99044 -20.53467 -20.39589 -19.89204 -17.97849 -17.78934 -17.53291 -16.62497 -16.53807 -16.41159 -16.28882 -15.80583 -15.73038 -15.54951 -15.33194 -15.01317 -14.81306 -14.39144 -14.26227 -14.02996 -13.80134 -13.68186 -13.52539 -13.51138 -13.25573 -12.99176 -12.78740 -12.70838 -12.65840 -12.43715 -12.14280 -12.11207 -12.03482 -11.83371 -11.78496 -11.65089 -11.63036 -11.50787 -11.47486 -10.70405 -10.38692 -10.18498 -10.06556 -10.02355 -9.60520 -8.47642 -5.96724 1.36829 1.39992 1.43353 1.53135 1.73094 2.04402 2.25305 2.28252 2.77589 3.18230 3.31294 3.46430 3.64508 3.75500 3.82460 4.09984 4.11887 4.17668 4.22343 4.25077 4.35426 4.40904 4.42805 4.43049 4.47350 4.51197 4.53163 4.59131 4.63972 4.76374 4.78711 4.83933 4.85483 4.97765 5.01903 5.04420 5.10398 5.19177 5.21922 5.33112 5.38963 5.40134 5.43078 5.43805 5.61209 5.79509 5.89387 5.96276 6.08111 6.59419 6.64069 7.11747 7.35509 7.55179 8.11510 8.69835 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.002046 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.045432 B =13679.309936 C =15010.484403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.063 0.937 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.130 4.130 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.717 5.717 11 C 0.156 3.844 12 H 0.064 0.936 13 C -0.154 4.154 14 C -0.097 4.097 15 C 0.011 3.989 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.015 3.985 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.414 0.586 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.108 0.892 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.723 -7.373 -5.296 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.166 4.166 3 C -0.062 4.062 4 H 0.082 0.918 5 C -0.157 4.157 6 C -0.204 4.204 7 C -0.169 4.169 8 C 0.297 3.703 9 O -0.459 6.459 10 N -0.369 5.369 11 C 0.051 3.949 12 H 0.082 0.918 13 C -0.212 4.212 14 C -0.116 4.116 15 C -0.118 4.118 16 N -0.205 5.205 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.113 4.113 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.126 0.874 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.163 -7.493 -5.508 27.766 hybrid contribution 0.704 0.291 1.132 1.365 sum -25.458 -7.202 -4.376 26.816 Atomic orbital electron populations 1.23994 0.95961 1.02283 1.00572 1.22905 0.95993 0.97631 1.00041 1.20078 0.96606 0.95964 0.93545 0.91810 1.21570 0.98093 1.01576 0.94464 1.21715 0.99778 1.01577 0.97322 1.21744 1.00863 0.93529 1.00775 1.21195 0.78860 0.90679 0.79518 1.90682 1.63379 1.49735 1.42108 1.46049 1.41980 1.15015 1.33816 1.20863 0.91079 0.83794 0.99208 0.91822 1.22066 0.99010 0.99733 1.00382 1.23122 0.91160 0.97608 0.99697 1.24014 0.92729 0.98108 0.96951 1.68372 1.13177 1.08826 1.30130 1.22346 0.92731 0.98806 0.96970 1.20813 0.87264 0.86808 0.82220 1.90475 1.80772 1.28816 1.50297 1.41971 1.14520 1.26929 1.38036 1.19656 0.92947 1.10167 1.23529 0.90413 1.26066 1.02998 0.96980 0.95397 1.69675 1.37592 1.22139 1.26825 0.84915 0.77130 0.78245 0.77963 1.19541 1.19481 1.19775 1.24070 0.88197 0.95541 1.03532 0.89085 0.87158 0.86058 0.93100 0.91584 0.93011 0.91812 0.93756 0.86982 0.86525 0.74910 0.90567 0.90777 0.93696 0.86180 0.92056 0.90893 0.87428 0.90877 0.77116 0.91308 0.87404 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.15 -1.71 7.69 25.65 0.20 -1.51 16 3 C -0.04 -0.65 1.79 -11.54 -0.02 -0.68 16 4 H 0.06 1.22 7.47 -2.38 -0.02 1.21 16 5 C -0.12 -2.19 5.19 30.59 0.16 -2.03 16 6 C -0.15 -2.54 9.80 71.98 0.71 -1.84 16 7 C -0.13 -1.58 5.15 29.85 0.15 -1.43 16 8 C 0.51 9.56 7.35 87.66 0.64 10.21 16 9 O -0.58 -15.85 13.97 -3.01 -0.04 -15.89 16 10 N -0.72 -10.85 5.08 -442.54 -2.25 -13.10 16 11 C 0.16 2.75 2.38 44.99 0.11 2.86 16 12 H 0.06 1.48 7.42 -2.39 -0.02 1.46 16 13 C -0.15 -2.30 9.31 71.98 0.67 -1.63 16 14 C -0.10 -1.80 3.46 -10.15 -0.04 -1.84 16 15 C 0.01 0.30 7.53 86.37 0.65 0.95 16 16 N -0.48 -15.35 5.65 -911.71 -5.15 -20.50 16 17 C 0.02 0.83 5.28 85.56 0.45 1.28 16 18 C 0.44 21.86 7.83 87.66 0.69 22.55 16 19 O -0.62 -35.55 16.01 -3.08 -0.05 -35.59 16 20 N -0.58 -30.59 5.29 -306.98 -1.62 -32.21 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 25 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 C 0.02 0.32 6.65 86.41 0.57 0.89 16 30 H 0.09 1.07 7.83 -2.91 -0.02 1.04 16 31 H 0.11 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.05 1.22 6.19 -2.38 -0.01 1.21 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.95 7.24 -2.39 -0.02 0.94 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.41 4.00 8.60 -92.70 -0.80 3.20 16 41 H 0.08 1.02 7.51 -2.39 -0.02 1.00 16 42 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.11 3.38 8.08 -2.38 -0.02 3.36 16 48 H 0.07 2.36 7.39 -2.39 -0.02 2.34 16 49 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 50 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 51 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.08 1.55 7.88 -2.38 -0.02 1.53 16 Total: -1.00 -75.86 422.67 -0.23 -76.09 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.62 Total: 38.17 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 7.20 Total: 7.72 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -8.74 Total: -116.19 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.09 Total: -51.49 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -75.86 -0.23 -76.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds