Wall clock time and date at job start Tue Mar 31 2020 20:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00191 * 2 1 4 4 H 1.09010 * 109.46792 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47137 * 239.99506 * 3 2 1 6 6 C 1.53007 * 109.47210 * 64.99559 * 5 3 2 7 7 C 1.52999 * 109.47444 * 119.99131 * 3 2 1 8 8 C 1.50701 * 109.47163 * 294.99736 * 7 3 2 9 9 O 1.21281 * 120.00034 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99806 * 179.97438 * 8 7 3 11 11 C 1.46505 * 119.99932 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46864 * 325.00418 * 11 10 8 13 13 C 1.53000 * 109.47001 * 85.00356 * 11 10 8 14 14 C 1.53000 * 109.47114 * 205.00591 * 11 10 8 15 15 C 1.53936 * 113.73277 * 161.73200 * 14 11 10 16 16 N 1.47958 * 86.18150 * 221.91718 * 15 14 11 17 17 C 1.46894 * 111.00452 * 137.57918 * 16 15 14 18 18 C 1.50701 * 109.47163 * 90.63893 * 17 16 15 19 19 O 1.21295 * 119.99289 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00477 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00271 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99812 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99868 * 180.02562 * 21 20 18 24 24 N 1.31403 * 120.00220 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99888 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47009 * 59.99775 * 25 23 21 27 27 H 1.48494 * 109.46999 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46837 * 299.99871 * 25 23 21 29 29 C 1.47966 * 90.76103 * 24.68860 * 16 15 14 30 30 H 1.07997 * 119.99749 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99576 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00048 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47453 * 184.99780 * 5 3 2 34 34 H 1.09004 * 109.46960 * 304.99640 * 5 3 2 35 35 H 1.09001 * 109.46890 * 180.02562 * 6 5 3 36 36 H 1.09003 * 109.46475 * 300.00138 * 6 5 3 37 37 H 1.08992 * 109.46800 * 59.99867 * 6 5 3 38 38 H 1.09003 * 109.46898 * 175.00396 * 7 3 2 39 39 H 1.08998 * 109.47241 * 55.00446 * 7 3 2 40 40 H 0.96999 * 120.00273 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.47147 * 60.05318 * 13 11 10 42 42 H 1.08997 * 109.46781 * 180.02562 * 13 11 10 43 43 H 1.08995 * 109.47048 * 300.05296 * 13 11 10 44 44 H 1.09008 * 112.93670 * 293.43655 * 14 11 10 45 45 H 1.08997 * 113.75841 * 336.23849 * 15 14 11 46 46 H 1.08997 * 113.75787 * 107.60320 * 15 14 11 47 47 H 1.08992 * 109.47813 * 210.64301 * 17 16 15 48 48 H 1.09008 * 109.46948 * 330.64397 * 17 16 15 49 49 H 0.97003 * 119.99790 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00042 * 180.02562 * 24 23 21 51 51 H 1.09001 * 113.76106 * 220.99581 * 29 16 15 52 52 H 1.08999 * 113.86176 * 89.64061 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9433 1.3860 -1.2492 6 6 2.0566 1.4305 -2.4954 7 6 2.9430 1.3863 1.2493 8 6 2.0695 1.4304 2.4766 9 8 0.8624 1.3994 2.3632 10 7 2.6298 1.5032 3.7001 11 6 1.7807 1.5455 4.8933 12 1 0.8722 2.1060 4.6729 13 6 1.4123 0.1195 5.3078 14 6 2.5376 2.2288 6.0339 15 6 1.6270 2.7264 7.1710 16 7 2.4688 3.9432 7.1792 17 6 1.6451 5.1524 7.3105 18 6 1.4814 5.4928 8.7694 19 8 2.0004 4.7966 9.6164 20 7 0.7585 6.5705 9.1330 21 6 0.6100 6.8804 10.4602 22 1 1.0728 6.2611 11.2144 23 6 -0.1358 7.9913 10.8350 24 7 -0.6984 8.7450 9.9174 25 14 -0.3375 8.4140 12.6434 26 1 0.9973 8.6578 13.2466 27 1 -1.1709 9.6358 12.7761 28 1 -0.9989 7.2844 13.3449 29 6 2.8507 3.7124 5.7684 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5542 2.2877 -1.2056 34 1 3.5907 0.5103 -1.2949 35 1 2.6834 1.4877 -3.3853 36 1 1.4458 0.5287 -2.5389 37 1 1.4092 2.3060 -2.4495 38 1 3.5539 2.2880 1.2056 39 1 3.5905 0.5107 1.2954 40 1 3.5953 1.5276 3.7909 41 1 2.3207 -0.4407 5.5290 42 1 0.7802 0.1511 6.1952 43 1 0.8739 -0.3675 4.4949 44 1 3.3973 1.6537 6.3778 45 1 0.5974 2.9067 6.8621 46 1 1.7012 2.1351 8.0836 47 1 2.1318 5.9812 6.7964 48 1 0.6654 4.9746 6.8667 49 1 0.3432 7.1269 8.4556 50 1 -1.2187 9.5207 10.1791 51 1 3.9025 3.9087 5.5604 52 1 2.1802 4.1806 5.0479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717557462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:04 Heat of formation + Delta-G solvation = -35.182322 kcal Electronic energy + Delta-G solvation = -28924.377476 eV Core-core repulsion = 24924.919738 eV Total energy + Delta-G solvation = -3999.457738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58763 -39.64828 -37.80346 -37.08811 -35.26063 -33.84720 -32.08401 -31.92667 -31.20800 -30.27121 -29.31056 -26.12180 -25.75892 -25.11183 -23.98298 -22.06551 -21.70219 -20.65870 -19.89115 -19.56740 -19.15777 -17.86331 -17.14791 -16.62323 -16.00918 -15.79508 -15.49443 -15.20674 -14.86523 -14.83777 -14.55833 -14.36438 -14.10753 -13.78231 -13.67232 -13.61385 -13.26013 -12.96516 -12.68832 -12.55592 -12.48584 -12.30321 -12.15836 -11.93301 -11.63734 -11.54548 -11.52247 -11.27453 -11.14711 -11.02994 -10.89145 -10.83154 -10.77508 -10.56004 -10.41678 -10.17713 -10.01366 -9.45909 -9.35443 -9.20700 -8.68790 -8.13643 -7.92614 -6.38240 -3.79004 2.22990 2.52625 2.94236 3.22247 3.27441 3.31968 3.91825 3.96785 4.23980 4.30086 4.42267 4.44995 4.52943 4.58001 4.88728 4.92273 4.99324 5.05006 5.05926 5.11975 5.14445 5.19361 5.22748 5.29016 5.36274 5.43952 5.47539 5.51082 5.56991 5.57433 5.63021 5.69193 5.70785 5.75746 5.76628 5.80907 5.89529 5.96671 5.98221 6.03093 6.23901 6.31024 6.35485 6.52779 6.61118 6.72448 7.20062 7.33749 7.57963 8.09437 8.09736 8.66007 9.21834 9.58538 10.11189 10.79621 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.001785 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.430900 B =15682.148155 C =16157.947963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.511 3.489 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.151 3.849 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.126 4.126 15 C 0.023 3.977 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.006 3.994 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.086 0.914 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -16.203 -23.525 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.297 3.703 9 O -0.407 6.407 10 N -0.378 5.378 11 C 0.046 3.954 12 H 0.105 0.895 13 C -0.219 4.219 14 C -0.145 4.145 15 C -0.107 4.107 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.124 4.124 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.105 -16.399 -22.490 28.727 hybrid contribution -0.609 0.711 0.044 0.937 sum 6.496 -15.688 -22.446 28.145 Atomic orbital electron populations 1.23708 0.95945 1.01338 0.98923 1.22605 0.95958 0.96984 1.01584 1.20156 0.96578 0.97131 0.92457 0.90040 1.21543 0.97854 1.01933 0.94046 1.21761 0.99845 1.02181 0.97106 1.21728 0.98729 1.04282 0.92794 1.20670 0.89276 0.75806 0.84545 1.90722 1.14773 1.48606 1.86569 1.46102 1.10297 1.75706 1.05719 1.21007 0.94033 0.96776 0.83541 0.89488 1.22123 1.01753 0.96108 1.01886 1.23338 0.99973 0.95875 0.95333 1.23913 0.95357 0.93047 0.98351 1.68377 1.29491 1.00743 1.18446 1.22477 0.96967 0.95070 0.97688 1.19692 0.84030 0.83825 0.89289 1.90516 1.51295 1.52092 1.52017 1.41873 1.45744 1.24314 1.08527 1.19648 1.29929 1.09851 0.83387 0.88026 1.25250 0.96699 0.96082 0.99964 1.69602 1.34292 1.17138 1.33459 0.85921 0.78389 0.77740 0.82174 1.19922 1.21002 1.19941 1.23960 1.02113 0.94507 0.91788 0.88599 0.89282 0.88219 0.91786 0.91891 0.92909 0.92419 0.92750 0.88782 0.88974 0.76749 0.92498 0.91353 0.92257 0.87820 0.91276 0.88829 0.89529 0.92476 0.77570 0.91876 0.89518 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 13.22 29.01 0.38 -1.10 16 2 C -0.15 -1.24 6.76 -36.03 -0.24 -1.49 16 3 C -0.04 -0.32 1.82 -91.77 -0.17 -0.48 16 4 H 0.08 0.73 7.60 -51.92 -0.39 0.33 16 5 C -0.12 -0.64 5.39 -26.73 -0.14 -0.78 16 6 C -0.15 -0.88 9.73 37.16 0.36 -0.52 16 7 C -0.14 -0.83 5.16 -27.88 -0.14 -0.97 16 8 C 0.51 4.73 7.54 -10.99 -0.08 4.65 16 9 O -0.53 -6.90 13.83 5.56 0.08 -6.83 16 10 N -0.73 -5.73 4.94 -53.80 -0.27 -6.00 16 11 C 0.15 1.47 2.29 -67.93 -0.16 1.31 16 12 H 0.09 1.04 7.48 -51.93 -0.39 0.66 16 13 C -0.16 -1.50 9.44 37.16 0.35 -1.15 16 14 C -0.13 -1.32 3.35 -89.69 -0.30 -1.62 16 15 C 0.02 0.32 7.41 -2.77 -0.02 0.30 16 16 N -0.45 -7.40 5.65 -239.74 -1.35 -8.76 16 17 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 18 C 0.45 10.87 7.83 -10.99 -0.09 10.79 16 19 O -0.58 -16.13 16.01 5.54 0.09 -16.04 16 20 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 25 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 C 0.01 0.07 7.38 -2.77 -0.02 0.04 16 30 H 0.10 0.96 7.83 -52.49 -0.41 0.55 16 31 H 0.09 0.74 8.06 -52.48 -0.42 0.31 16 32 H 0.10 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.36 7.38 -51.93 -0.38 -0.02 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 2.17 8.60 -40.82 -0.35 1.82 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.07 0.96 7.36 -51.93 -0.38 0.58 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 48 H 0.06 0.95 7.38 -51.92 -0.38 0.57 16 49 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 52 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 424.15 15.07 6.39 6.39 Total: -1.00 -33.98 424.15 -9.23 -43.21 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -9.27 Total: 9.73 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.54 Total: 0.99 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.95 Total: -53.79 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.98 -9.23 -43.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.025 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds