Wall clock time and date at job start Tue Mar 31 2020 20:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99685 * 2 1 4 4 H 1.09002 * 109.47118 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46666 * 119.99961 * 3 2 1 6 6 C 1.53000 * 109.47171 * 294.75266 * 5 3 2 7 7 C 1.52992 * 109.47034 * 239.99562 * 3 2 1 8 8 C 1.50698 * 109.47295 * 174.01898 * 7 3 2 9 9 O 1.21281 * 119.99905 * 353.87879 * 8 7 3 10 10 N 1.34782 * 120.00370 * 173.87419 * 8 7 3 11 11 C 1.46495 * 120.00120 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47202 * 325.00194 * 11 10 8 13 13 C 1.53004 * 109.47210 * 85.00220 * 11 10 8 14 14 C 1.53004 * 109.47189 * 205.00281 * 11 10 8 15 15 C 1.53933 * 113.73344 * 161.90699 * 14 11 10 16 16 N 1.48192 * 86.09739 * 221.95650 * 15 14 11 17 17 C 1.46902 * 111.07173 * 137.52219 * 16 15 14 18 18 C 1.50702 * 109.47556 * 90.56217 * 17 16 15 19 19 O 1.21294 * 119.99250 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00436 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00412 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99495 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00096 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00336 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99889 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47023 * 89.99926 * 25 23 21 27 27 H 1.48498 * 109.46927 * 210.00333 * 25 23 21 28 28 H 1.48503 * 109.46858 * 330.00279 * 25 23 21 29 29 C 1.47963 * 90.79863 * 24.59846 * 16 15 14 30 30 H 1.08000 * 119.99999 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00260 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99999 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.46832 * 174.75640 * 5 3 2 34 34 H 1.09003 * 109.47598 * 54.75516 * 5 3 2 35 35 H 1.09005 * 109.47209 * 175.26472 * 6 5 3 36 36 H 1.09000 * 109.47064 * 55.26405 * 6 5 3 37 37 H 1.09003 * 109.47349 * 295.26299 * 6 5 3 38 38 H 1.09008 * 109.47361 * 294.01962 * 7 3 2 39 39 H 1.09005 * 109.47475 * 54.01849 * 7 3 2 40 40 H 0.96995 * 119.99628 * 0.02562 * 10 8 7 41 41 H 1.08998 * 109.47008 * 184.95927 * 13 11 10 42 42 H 1.09004 * 109.46879 * 304.96379 * 13 11 10 43 43 H 1.09001 * 109.47113 * 64.95949 * 13 11 10 44 44 H 1.08996 * 112.93238 * 293.47275 * 14 11 10 45 45 H 1.09001 * 113.75974 * 336.23056 * 15 14 11 46 46 H 1.08997 * 113.76471 * 107.60294 * 15 14 11 47 47 H 1.08992 * 109.47390 * 210.56793 * 17 16 15 48 48 H 1.09000 * 109.46961 * 330.56234 * 17 16 15 49 49 H 0.97009 * 119.99684 * 0.02562 * 20 18 17 50 50 H 0.96995 * 120.00162 * 179.97438 * 24 23 21 51 51 H 1.09000 * 113.75546 * 221.07960 * 29 16 15 52 52 H 1.09001 * 113.85331 * 89.73554 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0562 1.4368 2.4950 7 6 2.9431 1.3862 -1.2491 8 6 3.5830 2.7484 -1.3254 9 8 3.2731 3.6094 -0.5295 10 7 4.4999 3.0100 -2.2781 11 6 5.1215 4.3344 -2.3526 12 1 4.3924 5.0943 -2.0712 13 6 6.3140 4.3927 -1.3958 14 6 5.6015 4.5928 -3.7822 15 6 5.8620 6.0786 -4.0893 16 7 5.2026 5.8207 -5.3911 17 6 4.2895 6.9151 -5.7466 18 6 5.0344 7.9503 -6.5495 19 8 6.2103 7.7916 -6.8012 20 7 4.3939 9.0517 -6.9886 21 6 5.0718 9.9937 -7.7186 22 1 6.1189 9.8528 -7.9420 23 6 4.4115 11.1295 -8.1709 24 7 3.1374 11.3011 -7.8986 25 14 5.3350 12.4126 -9.1661 26 1 5.2371 12.0831 -10.6108 27 1 4.7397 13.7509 -8.9221 28 1 6.7624 12.4235 -8.7565 29 6 4.4613 4.6782 -4.8127 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5571 2.2856 1.2036 34 1 3.5875 0.5084 1.2975 35 1 2.6814 1.4097 3.3875 36 1 1.3829 0.5796 2.4968 37 1 1.4724 2.3574 2.4883 38 1 3.7193 0.6226 -1.1972 39 1 2.3309 1.2221 -2.1360 40 1 4.7475 2.3215 -2.9149 41 1 6.7223 5.4033 -1.3853 42 1 5.9876 4.1222 -0.3916 43 1 7.0815 3.6941 -1.7289 44 1 6.4158 3.9334 -4.0825 45 1 5.3100 6.7634 -3.4455 46 1 6.9190 6.3309 -4.1735 47 1 3.4635 6.5214 -6.3387 48 1 3.8990 7.3724 -4.8374 49 1 3.4534 9.1784 -6.7876 50 1 2.6766 12.0942 -8.2140 51 1 4.4012 3.8138 -5.4740 52 1 3.4984 4.9508 -4.3807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717557464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:06 Heat of formation + Delta-G solvation = -61.255098 kcal Electronic energy + Delta-G solvation = -28865.314497 eV Core-core repulsion = 24864.726159 eV Total energy + Delta-G solvation = -4000.588338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57937 -40.67386 -39.59920 -37.77025 -36.23500 -35.87527 -33.33262 -32.79889 -32.63362 -31.21216 -30.28902 -27.45223 -27.07491 -25.94767 -25.29832 -23.07716 -22.45952 -21.40000 -20.99501 -20.58160 -20.40771 -19.89751 -17.96849 -17.83351 -17.40920 -16.75139 -16.56943 -16.31334 -16.23663 -15.83658 -15.70824 -15.55096 -15.32711 -14.99940 -14.83144 -14.35762 -14.19707 -14.03905 -13.79827 -13.69623 -13.55571 -13.50486 -13.26092 -12.99424 -12.89420 -12.73816 -12.45547 -12.43359 -12.14513 -12.09143 -12.03900 -11.87653 -11.83377 -11.60901 -11.60078 -11.50657 -11.46851 -10.67784 -10.38864 -10.16936 -10.05377 -10.02355 -9.62148 -8.47634 -5.96781 1.37028 1.40224 1.44669 1.53413 1.75571 2.04274 2.24343 2.27677 2.76693 3.18254 3.34340 3.43617 3.64938 3.78086 3.85641 4.09396 4.13168 4.17356 4.20475 4.26249 4.35671 4.39756 4.42706 4.44572 4.48222 4.50637 4.53096 4.61110 4.67200 4.75714 4.78309 4.82814 4.86147 4.99456 5.01922 5.07475 5.12707 5.20415 5.20868 5.33458 5.38863 5.42192 5.42256 5.46998 5.59917 5.80401 5.89037 5.98318 6.07617 6.59346 6.67395 7.11760 7.38601 7.55083 8.11398 8.69888 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.001763 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.500302 B =15879.021118 C =16367.130104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.057 0.943 5 C -0.116 4.116 6 C -0.148 4.148 7 C -0.128 4.128 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.712 5.712 11 C 0.158 3.842 12 H 0.064 0.936 13 C -0.156 4.156 14 C -0.097 4.097 15 C 0.013 3.987 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.013 3.987 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.416 0.584 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.074 0.926 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.106 0.894 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -25.907 17.017 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.162 4.162 3 C -0.065 4.065 4 H 0.076 0.924 5 C -0.154 4.154 6 C -0.205 4.205 7 C -0.167 4.167 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.364 5.364 11 C 0.053 3.947 12 H 0.082 0.918 13 C -0.214 4.214 14 C -0.116 4.116 15 C -0.116 4.116 16 N -0.204 5.204 17 C -0.108 4.108 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.115 4.115 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.092 0.908 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.125 0.875 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.666 -25.314 16.752 30.472 hybrid contribution -0.667 1.289 -0.077 1.453 sum -3.333 -24.026 16.675 29.435 Atomic orbital electron populations 1.23995 0.96223 1.02120 1.00965 1.22928 0.95828 0.97771 0.99680 1.20105 0.96714 0.95762 0.93947 0.92427 1.21552 0.97987 1.01864 0.93956 1.21727 0.99857 1.01339 0.97600 1.21732 1.00925 0.93521 1.00545 1.21227 0.78486 0.90769 0.79730 1.90699 1.63673 1.49635 1.42050 1.45953 1.42034 1.14681 1.33776 1.20782 0.94653 0.85396 0.93886 0.91791 1.22080 0.97745 1.02869 0.98729 1.23128 0.99141 0.96488 0.92880 1.23985 1.01230 0.96687 0.89718 1.68381 1.20607 1.04794 1.26636 1.22339 0.95777 0.92929 0.99784 1.20790 0.88027 0.83853 0.84395 1.90477 1.18282 1.78979 1.62560 1.41970 1.12639 1.18506 1.48335 1.19663 0.96007 1.00152 1.30509 0.90385 1.26064 0.96671 0.99884 0.98785 1.69675 1.09842 1.29981 1.46765 0.84911 0.77978 0.77074 0.78259 1.19540 1.19479 1.19789 1.24039 0.96136 0.95342 0.95981 0.89523 0.87192 0.85578 0.92856 0.90932 0.92647 0.91999 0.94237 0.86197 0.86945 0.74709 0.91793 0.93369 0.90731 0.86144 0.91355 0.90523 0.87649 0.90843 0.77129 0.91306 0.87527 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 14.32 67.78 0.97 -1.10 16 2 C -0.14 -1.43 7.69 25.64 0.20 -1.24 16 3 C -0.05 -0.62 1.79 -11.54 -0.02 -0.64 16 4 H 0.06 1.08 7.47 -2.39 -0.02 1.07 16 5 C -0.12 -1.71 5.19 30.59 0.16 -1.56 16 6 C -0.15 -2.17 9.80 71.98 0.71 -1.47 16 7 C -0.13 -1.27 5.15 29.84 0.15 -1.12 16 8 C 0.51 8.58 7.35 87.66 0.64 9.23 16 9 O -0.58 -15.21 13.97 -3.03 -0.04 -15.25 16 10 N -0.71 -9.35 4.94 -442.52 -2.19 -11.54 16 11 C 0.16 2.79 2.29 45.00 0.10 2.89 16 12 H 0.06 1.49 7.48 -2.38 -0.02 1.47 16 13 C -0.16 -2.65 9.43 71.98 0.68 -1.98 16 14 C -0.10 -1.81 3.35 -10.15 -0.03 -1.85 16 15 C 0.01 0.37 7.48 86.36 0.65 1.01 16 16 N -0.48 -15.35 5.65 -911.78 -5.15 -20.50 16 17 C 0.02 0.84 5.28 85.56 0.45 1.29 16 18 C 0.44 21.89 7.83 87.66 0.69 22.58 16 19 O -0.62 -35.53 16.01 -3.07 -0.05 -35.58 16 20 N -0.58 -30.61 5.29 -307.00 -1.62 -32.23 16 21 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 24 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 25 Si 0.99 43.72 29.55 68.60 2.03 45.74 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.01 0.28 7.38 86.41 0.64 0.92 16 30 H 0.09 1.07 7.83 -2.91 -0.02 1.05 16 31 H 0.11 0.86 8.06 -2.91 -0.02 0.83 16 32 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.05 1.07 6.19 -2.38 -0.01 1.05 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.06 0.79 7.24 -2.39 -0.02 0.78 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.42 2.88 8.60 -92.71 -0.80 2.08 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.89 7.38 -2.39 -0.02 1.87 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 48 H 0.07 2.38 7.39 -2.39 -0.02 2.36 16 49 H 0.40 19.93 7.90 -92.70 -0.73 19.19 16 50 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 51 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.07 1.49 7.88 -2.39 -0.02 1.47 16 Total: -1.00 -75.97 423.88 -0.11 -76.08 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.62 Total: 35.71 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 7.26 Total: 8.01 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -8.68 Total: -114.71 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.09 Total: -50.83 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.97 -0.11 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717557464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.823 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds