Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47217 * 2 1 4 4 H 1.09001 * 109.47183 * 305.61886 * 3 2 1 5 5 C 1.50703 * 109.47126 * 65.61793 * 3 2 1 6 6 O 1.21284 * 119.99641 * 22.41722 * 5 3 2 7 7 N 1.34776 * 120.00156 * 202.41452 * 5 3 2 8 8 C 1.46497 * 119.99999 * 174.98603 * 7 5 3 9 9 H 1.08995 * 109.47484 * 34.99668 * 8 7 5 10 10 C 1.53002 * 109.46658 * 274.99856 * 8 7 5 11 11 C 1.52999 * 109.47374 * 155.00294 * 8 7 5 12 12 C 1.53008 * 109.46636 * 294.99443 * 11 8 7 13 13 C 1.53004 * 109.46949 * 179.97438 * 12 11 8 14 14 N 1.46492 * 109.46993 * 180.02562 * 13 12 11 15 15 C 1.36936 * 120.00214 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00467 * 180.02562 * 15 14 13 18 18 N 1.31612 * 120.00067 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99709 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47297 * 90.00411 * 19 17 15 21 21 H 1.48499 * 109.47380 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.47561 * 330.00532 * 19 17 15 23 23 C 1.50697 * 109.47243 * 185.61951 * 3 2 1 24 24 C 1.41379 * 128.00852 * 299.68002 * 23 3 2 25 25 C 1.50701 * 126.80183 * 0.03319 * 24 23 3 26 26 N 1.30181 * 106.39529 * 179.89406 * 24 23 3 27 27 O 1.20917 * 111.60491 * 0.38900 * 26 24 23 28 28 C 1.34048 * 111.56743 * 359.75159 * 27 26 24 29 29 C 1.50702 * 126.77728 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.47193 * 174.70487 * 1 2 3 31 31 H 1.08996 * 109.47088 * 294.70346 * 1 2 3 32 32 H 1.09000 * 109.47015 * 54.70316 * 1 2 3 33 33 H 1.08999 * 109.47096 * 239.99962 * 2 1 3 34 34 H 1.09000 * 109.47183 * 119.99749 * 2 1 3 35 35 H 0.96998 * 119.99827 * 354.97864 * 7 5 3 36 36 H 1.09008 * 109.47139 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.46990 * 299.99828 * 10 8 7 38 38 H 1.08997 * 109.47499 * 60.00005 * 10 8 7 39 39 H 1.08997 * 109.47281 * 54.99217 * 11 8 7 40 40 H 1.09004 * 109.47408 * 174.99882 * 11 8 7 41 41 H 1.08997 * 109.47102 * 299.99884 * 12 11 8 42 42 H 1.08995 * 109.47108 * 60.00105 * 12 11 8 43 43 H 1.08998 * 109.46935 * 300.00398 * 13 12 11 44 44 H 1.09008 * 109.46816 * 60.00062 * 13 12 11 45 45 H 0.96997 * 120.00273 * 359.97438 * 14 13 12 46 46 H 0.97008 * 119.99821 * 179.97438 * 18 17 15 47 47 H 1.08994 * 109.47001 * 89.99652 * 25 24 23 48 48 H 1.08999 * 109.46831 * 210.00098 * 25 24 23 49 49 H 1.09006 * 109.47131 * 329.99793 * 25 24 23 50 50 H 1.09004 * 109.46192 * 269.99539 * 29 28 27 51 51 H 1.08999 * 109.46994 * 29.99019 * 29 28 27 52 52 H 1.08991 * 109.47372 * 149.99476 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5969 1.9845 -0.8354 5 6 1.6545 2.1116 1.2941 6 8 1.4122 1.4406 2.2750 7 7 1.5790 3.4555 1.3615 8 6 1.0987 4.1017 2.5854 9 1 1.4266 3.5278 3.4520 10 6 -0.4299 4.1635 2.5632 11 6 1.6652 5.5205 2.6691 12 6 3.1867 5.4542 2.8169 13 6 3.7534 6.8730 2.9000 14 7 5.2101 6.8094 3.0408 15 6 5.9399 7.9643 3.1352 16 1 5.4415 8.9219 3.1054 17 6 7.3204 7.9041 3.2681 18 7 8.0218 9.0141 3.3583 19 14 8.1824 6.2478 3.3189 20 1 8.5463 5.8366 1.9392 21 1 9.4124 6.3550 4.1440 22 1 7.2740 5.2349 3.9139 23 6 3.5406 1.4447 -0.1391 24 6 4.4959 0.8632 0.7257 25 6 4.2183 0.1010 1.9957 26 7 5.6628 1.1139 0.2059 27 8 5.5669 1.7520 -0.8168 28 6 4.2865 2.0096 -1.1185 29 6 3.7774 2.7757 -2.3123 30 1 -0.3633 -1.0232 -0.0948 31 1 -0.3633 0.4295 0.9336 32 1 -0.3633 0.5938 -0.8388 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8428 3.9949 0.5997 36 1 -0.7874 4.6439 3.4741 37 1 -0.7578 4.7375 1.6965 38 1 -0.8336 3.1528 2.5035 39 1 1.4119 6.0671 1.7608 40 1 1.2384 6.0319 3.5320 41 1 3.4400 4.9075 3.7252 42 1 3.6135 4.9428 1.9541 43 1 3.4999 7.4192 1.9914 44 1 3.3265 7.3847 3.7626 45 1 5.6577 5.9493 3.0680 46 1 8.9864 8.9721 3.4516 47 1 4.1034 -0.9583 1.7660 48 1 5.0491 0.2346 2.6886 49 1 3.3015 0.4755 2.4512 50 1 3.7031 3.8336 -2.0602 51 1 4.4671 2.6486 -3.1467 52 1 2.7939 2.3992 -2.5932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717688677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = -18.746144 kcal Electronic energy + Delta-G solvation = -30839.432098 eV Core-core repulsion = 26840.687087 eV Total energy + Delta-G solvation = -3998.745012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.02013 -41.18098 -38.30170 -37.04008 -36.48054 -34.94479 -34.26147 -33.87780 -32.81726 -31.19135 -29.82955 -29.38083 -27.78038 -27.37981 -24.65920 -23.65539 -23.45707 -22.52874 -21.65114 -21.17823 -20.96423 -19.66850 -18.83864 -18.56847 -17.61254 -17.30359 -16.67075 -16.40743 -15.98142 -15.85816 -15.49137 -15.26946 -15.02932 -14.76907 -14.67933 -14.39721 -14.27391 -14.17712 -13.91427 -13.85861 -13.58857 -13.53601 -13.49756 -13.30842 -13.22087 -13.04676 -12.91106 -12.53497 -12.46553 -12.28015 -12.13872 -12.08755 -11.94282 -11.91195 -11.81303 -11.70993 -11.54921 -11.11133 -11.03069 -10.69751 -10.10803 -9.96654 -9.34667 -8.09260 -5.41528 0.43970 1.08258 1.31066 1.32146 1.38673 1.62723 2.22154 2.25144 2.40250 3.14771 3.22636 3.44722 3.47132 3.66489 3.76341 3.84522 3.89258 4.06479 4.15224 4.20112 4.25087 4.35026 4.39048 4.51238 4.53452 4.54049 4.58540 4.64458 4.68864 4.73511 4.76646 4.81658 4.81783 4.87751 4.90420 4.93215 5.00278 5.08309 5.12222 5.15458 5.26063 5.30826 5.33005 5.34688 5.38994 5.43364 5.63323 5.70739 6.16181 6.58724 7.02000 7.27485 7.28915 7.79883 7.96431 9.12443 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.003783 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.224822 B = 7399.474241 C = 9042.940121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.017 4.017 4 H 0.137 0.863 5 C 0.522 3.478 6 O -0.563 6.563 7 N -0.714 5.714 8 C 0.144 3.856 9 H 0.063 0.937 10 C -0.152 4.152 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.152 3.848 14 N -0.764 5.764 15 C -0.234 4.234 16 H 0.063 0.937 17 C -0.058 4.058 18 N -0.980 5.980 19 Si 0.948 3.052 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.264 1.264 23 C -0.207 4.207 24 C 0.020 3.980 25 C -0.087 4.087 26 N -0.404 5.404 27 O 0.081 5.919 28 C -0.010 4.010 29 C -0.081 4.081 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.410 0.590 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.024 0.976 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.096 0.904 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 -19.221 -13.708 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.038 4.038 4 H 0.155 0.845 5 C 0.309 3.691 6 O -0.442 6.442 7 N -0.365 5.365 8 C 0.039 3.961 9 H 0.081 0.919 10 C -0.211 4.211 11 C -0.149 4.149 12 C -0.153 4.153 13 C 0.027 3.973 14 N -0.409 5.409 15 C -0.365 4.365 16 H 0.081 0.919 17 C -0.250 4.250 18 N -0.631 5.631 19 Si 0.776 3.224 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.190 1.190 23 C -0.212 4.212 24 C -0.138 4.138 25 C -0.144 4.144 26 N -0.113 5.113 27 O 0.020 5.980 28 C -0.074 4.074 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.068 0.932 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.123 0.877 51 H 0.115 0.885 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.653 -19.732 -12.648 31.239 hybrid contribution 0.907 -0.326 0.253 0.996 sum -19.747 -20.059 -12.395 30.756 Atomic orbital electron populations 1.21763 0.94251 1.02671 1.01923 1.21407 0.96867 0.92954 1.02927 1.19725 0.87892 0.99350 0.96864 0.84489 1.20710 0.75727 0.82498 0.90155 1.90638 1.50716 1.64483 1.38382 1.46104 1.66250 1.06334 1.17827 1.20937 0.94809 0.92976 0.87372 0.91875 1.22078 0.93504 1.01954 1.03515 1.21761 0.92886 0.95557 1.04707 1.21631 0.96914 0.95576 1.01182 1.20862 0.81811 0.96293 0.98362 1.42851 1.04101 1.03876 1.90122 1.19091 0.89793 0.87008 1.40570 0.91947 1.25390 0.97003 0.99812 1.02761 1.69853 1.06373 1.27661 1.59183 0.85526 0.78225 0.80746 0.77919 1.20580 1.21754 1.18965 1.20551 0.96704 1.06792 0.97109 1.23792 0.88560 1.01230 1.00235 1.20410 1.03474 0.99731 0.90773 1.73894 1.24454 1.13773 0.99207 1.84797 1.28473 1.53280 1.31491 1.25124 0.82557 0.99511 1.00171 1.20738 1.03210 0.99438 0.90400 0.91747 0.93884 0.90953 0.89983 0.92261 0.75351 0.90774 0.90688 0.93384 0.89081 0.89254 0.93519 0.92462 0.94889 0.95769 0.80658 0.93207 0.88847 0.91844 0.88807 0.87750 0.88495 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.62 71.98 0.69 -1.10 16 2 C -0.10 -1.47 4.95 30.59 0.15 -1.32 16 3 C -0.02 -0.24 2.48 -12.29 -0.03 -0.27 16 4 H 0.14 0.95 7.13 -2.39 -0.02 0.93 16 5 C 0.52 10.15 5.75 87.66 0.50 10.65 16 6 O -0.56 -14.66 12.63 -3.04 -0.04 -14.70 16 7 N -0.71 -11.80 4.53 -442.54 -2.00 -13.80 16 8 C 0.14 2.61 2.62 44.99 0.12 2.73 16 9 H 0.06 1.51 7.51 -2.39 -0.02 1.49 16 10 C -0.15 -2.17 9.48 71.98 0.68 -1.49 16 11 C -0.11 -2.08 4.75 30.60 0.15 -1.93 16 12 C -0.11 -3.23 5.22 30.60 0.16 -3.07 16 13 C 0.15 5.66 6.26 86.38 0.54 6.20 16 14 N -0.76 -37.16 5.41 -343.45 -1.86 -39.02 16 15 C -0.23 -13.71 10.47 84.03 0.88 -12.83 16 16 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 18 N -0.98 -64.02 13.97 21.65 0.30 -63.72 16 19 Si 0.95 48.26 27.74 68.60 1.90 50.17 16 20 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 22 H -0.26 -12.68 6.52 99.48 0.65 -12.03 16 23 C -0.21 -4.06 4.91 -19.74 -0.10 -4.15 16 24 C 0.02 0.54 7.20 43.58 0.31 0.85 16 25 C -0.09 -2.12 9.26 71.24 0.66 -1.46 16 26 N -0.40 -12.44 12.07 -49.55 -0.60 -13.04 16 27 O 0.08 2.18 11.20 71.56 0.80 2.98 16 28 C -0.01 -0.18 7.49 25.04 0.19 0.01 16 29 C -0.08 -0.60 10.17 71.24 0.72 0.12 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 0.70 6.96 -2.39 -0.02 0.69 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.10 6.46 -2.39 -0.02 1.09 16 35 H 0.41 4.99 8.61 -92.71 -0.80 4.19 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.63 7.75 -2.39 -0.02 1.61 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.36 17.33 5.53 -92.71 -0.51 16.82 16 46 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 47 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 48 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.09 2.43 5.14 -2.38 -0.01 2.42 16 50 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.12 0.17 7.39 -2.39 -0.02 0.15 16 Total: -1.00 -80.39 415.38 4.16 -76.24 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.45 Total: 25.01 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 6.10 Total: -10.11 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -4.16 Total: -129.58 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.76 Total: -11.72 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.90 Total: 50.17 kcal Total: -80.39 4.16 -76.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.490 kcal (2) G-P(sol) polarization free energy of solvation -80.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds