Wall clock time and date at job start Tue Mar 31 2020 20:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 H 1.09001 * 109.47010 * 305.58533 * 3 2 1 5 5 C 1.50695 * 109.47028 * 185.58769 * 3 2 1 6 6 O 1.21289 * 119.99737 * 239.99877 * 5 3 2 7 7 N 1.34773 * 120.00416 * 60.00088 * 5 3 2 8 8 C 1.46503 * 120.00287 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.47035 * 324.99971 * 8 7 5 10 10 C 1.52999 * 109.47208 * 84.99415 * 8 7 5 11 11 C 1.52995 * 109.47252 * 205.00027 * 8 7 5 12 12 C 1.52994 * 109.47440 * 64.99550 * 11 8 7 13 13 C 1.53003 * 109.47226 * 180.02562 * 12 11 8 14 14 N 1.46499 * 109.46799 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99647 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00373 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99959 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99848 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47141 * 90.00284 * 19 17 15 21 21 H 1.48504 * 109.46813 * 209.99772 * 19 17 15 22 22 H 1.48496 * 109.47522 * 329.99579 * 19 17 15 23 23 C 1.50696 * 109.47227 * 65.58184 * 3 2 1 24 24 C 1.41381 * 128.00272 * 63.19037 * 23 3 2 25 25 C 1.50703 * 126.80581 * 0.04181 * 24 23 3 26 26 N 1.30177 * 106.39447 * 180.29592 * 24 23 3 27 27 O 1.20926 * 111.60181 * 359.53780 * 26 24 23 28 28 C 1.34031 * 111.56653 * 0.48656 * 27 26 24 29 29 C 1.50708 * 126.77623 * 179.68824 * 28 27 26 30 30 H 1.09003 * 109.46685 * 59.99656 * 1 2 3 31 31 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47008 * 300.00529 * 1 2 3 33 33 H 1.09004 * 109.46643 * 239.99783 * 2 1 3 34 34 H 1.09003 * 109.46685 * 120.00344 * 2 1 3 35 35 H 0.96999 * 119.99875 * 359.97438 * 7 5 3 36 36 H 1.09002 * 109.47335 * 300.00146 * 10 8 7 37 37 H 1.09001 * 109.47192 * 60.00355 * 10 8 7 38 38 H 1.08999 * 109.47502 * 180.02562 * 10 8 7 39 39 H 1.08998 * 109.47122 * 184.99795 * 11 8 7 40 40 H 1.09002 * 109.46735 * 304.99282 * 11 8 7 41 41 H 1.08998 * 109.47163 * 300.00220 * 12 11 8 42 42 H 1.09004 * 109.46858 * 60.00161 * 12 11 8 43 43 H 1.08998 * 109.47181 * 300.00150 * 13 12 11 44 44 H 1.08997 * 109.46792 * 60.00496 * 13 12 11 45 45 H 0.96998 * 120.00664 * 359.97438 * 14 13 12 46 46 H 0.97003 * 120.00347 * 179.97438 * 18 17 15 47 47 H 1.09000 * 109.47347 * 85.25430 * 25 24 23 48 48 H 1.08995 * 109.47147 * 205.25577 * 25 24 23 49 49 H 1.09001 * 109.46841 * 325.25327 * 25 24 23 50 50 H 1.09001 * 109.47048 * 264.90534 * 29 28 27 51 51 H 1.08998 * 109.46809 * 24.90163 * 29 28 27 52 52 H 1.08999 * 109.47114 * 144.90646 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5974 1.9843 -0.8358 5 6 3.5407 1.4446 -0.1383 6 8 4.2289 1.9408 0.7284 7 7 4.1181 0.8951 -1.2251 8 6 5.5770 0.8967 -1.3593 9 1 5.9803 1.8138 -0.9299 10 6 6.1584 -0.3107 -0.6210 11 6 5.9530 0.8186 -2.8403 12 6 5.4794 2.0861 -3.5543 13 6 5.8549 2.0077 -5.0354 14 7 5.4020 3.2217 -5.7189 15 6 5.6282 3.3769 -7.0606 16 1 6.1408 2.6046 -7.6147 17 6 5.1986 4.5270 -7.7084 18 7 4.5733 5.4681 -7.0332 19 14 5.5078 4.7390 -9.5384 20 1 4.3632 4.1802 -10.3018 21 1 5.6537 6.1833 -9.8516 22 1 6.7521 4.0223 -9.9165 23 6 1.6539 2.1118 1.2937 24 6 2.0611 1.7731 2.6045 25 6 2.9859 0.6513 3.0011 26 7 1.4746 2.6189 3.4016 27 8 0.7945 3.4095 2.7893 28 6 0.8355 3.1767 1.4700 29 6 0.1134 3.9474 0.3949 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5678 0.4979 -1.9181 36 1 5.8905 -0.2550 0.4341 37 1 5.7551 -1.2279 -1.0504 38 1 7.2438 -0.3093 -0.7205 39 1 7.0351 0.7303 -2.9362 40 1 5.4761 -0.0520 -3.2907 41 1 4.3973 2.1744 -3.4584 42 1 5.9564 2.9566 -3.1038 43 1 6.9370 1.9191 -5.1317 44 1 5.3776 1.1373 -5.4856 45 1 4.9412 3.9153 -5.2214 46 1 4.2734 6.2719 -7.4858 47 1 4.0195 0.9897 2.9288 48 1 2.7730 0.3504 4.0269 49 1 2.8340 -0.1976 2.3345 50 1 -0.8262 3.4478 0.1586 51 1 -0.0913 4.9581 0.7478 52 1 0.7353 3.9934 -0.4991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717688678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:46 Heat of formation + Delta-G solvation = 3.601798 kcal Electronic energy + Delta-G solvation = -30062.104724 eV Core-core repulsion = 26064.328791 eV Total energy + Delta-G solvation = -3997.775932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.01115 -40.23384 -37.21667 -36.08930 -34.87613 -34.08354 -33.20336 -32.44259 -31.10669 -29.49140 -28.97447 -28.61324 -27.21973 -25.68321 -23.29807 -23.01677 -22.26004 -20.96115 -20.77633 -20.34689 -20.16340 -17.86194 -17.32312 -17.02950 -16.91345 -16.28100 -15.55168 -15.08155 -14.72926 -14.58543 -14.30368 -14.22656 -13.87203 -13.60542 -13.59285 -13.50956 -13.32422 -13.15158 -13.04099 -12.93662 -12.77388 -12.51260 -12.44954 -12.25313 -12.17479 -12.11250 -11.58623 -11.34967 -11.30620 -11.18441 -10.87839 -10.87091 -10.82071 -10.49436 -10.42628 -10.03116 -9.98305 -9.78034 -9.69923 -9.22670 -9.12368 -8.88201 -6.93181 -5.77706 -3.06416 1.34492 2.10462 2.53786 2.96600 3.12368 3.42083 3.47183 3.49136 4.04398 4.27888 4.33620 4.47967 4.54051 4.60760 4.71871 4.84744 4.89902 5.01468 5.02360 5.11306 5.12730 5.16733 5.22773 5.32546 5.39141 5.40300 5.51740 5.52379 5.55963 5.56664 5.57385 5.60016 5.65573 5.73213 5.76342 5.84609 5.86376 5.93706 6.02940 6.09704 6.10469 6.18589 6.33360 6.38475 6.46504 6.84206 6.87703 7.41034 7.68393 8.14395 8.22092 8.41429 9.52261 10.11112 10.45368 11.45276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002475 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.285418 B =11310.200259 C =12505.999802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.030 4.030 4 H 0.110 0.890 5 C 0.519 3.481 6 O -0.530 6.530 7 N -0.719 5.719 8 C 0.142 3.858 9 H 0.088 0.912 10 C -0.161 4.161 11 C -0.123 4.123 12 C -0.125 4.125 13 C 0.153 3.847 14 N -0.735 5.735 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.177 4.177 24 C 0.053 3.947 25 C -0.075 4.075 26 N -0.374 5.374 27 O 0.093 5.907 28 C -0.025 4.025 29 C -0.077 4.077 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -13.592 18.326 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.052 4.052 4 H 0.128 0.872 5 C 0.305 3.695 6 O -0.406 6.406 7 N -0.372 5.372 8 C 0.038 3.962 9 H 0.106 0.894 10 C -0.220 4.220 11 C -0.161 4.161 12 C -0.163 4.163 13 C 0.025 3.975 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.181 4.181 24 C -0.106 4.106 25 C -0.132 4.132 26 N -0.082 5.082 27 O 0.030 5.970 28 C -0.089 4.089 29 C -0.135 4.135 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.107 0.893 51 H 0.104 0.896 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.739 -13.065 20.108 25.197 hybrid contribution -0.077 0.053 -2.026 2.028 sum -7.817 -13.012 18.082 23.609 Atomic orbital electron populations 1.21762 0.94636 1.02086 1.02289 1.21589 0.97123 0.93381 1.03126 1.19652 0.93036 0.97814 0.94724 0.87192 1.20338 0.89713 0.77642 0.81843 1.90702 1.64709 1.44729 1.40425 1.46083 1.07958 1.60448 1.22661 1.21034 0.79439 0.99563 0.96206 0.89388 1.22164 1.01146 0.97892 1.00756 1.21847 1.02221 0.99166 0.92886 1.21725 1.01145 0.96834 0.96574 1.20646 0.96527 0.90575 0.89723 1.42381 1.69853 1.18544 1.07091 1.19240 1.30858 1.01822 0.85170 0.91230 1.24750 1.01301 0.96921 0.98116 1.69660 1.44514 1.09054 1.35042 0.86188 0.77770 0.76938 0.85296 1.21715 1.21741 1.20768 1.20157 1.03093 0.99710 0.95183 1.23206 0.99209 0.98702 0.89488 1.20246 0.98077 0.93421 1.01462 1.73816 1.09585 1.03948 1.20862 1.84790 1.52042 1.43710 1.16432 1.24193 1.00903 0.97621 0.86154 1.20388 0.99888 0.99733 0.93446 0.92112 0.92228 0.92645 0.90646 0.90984 0.76514 0.92376 0.92541 0.91618 0.90319 0.91426 0.92094 0.92005 0.96535 0.96584 0.78352 0.93515 0.89179 0.91240 0.90688 0.89291 0.89648 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.73 37.16 0.36 -0.57 16 2 C -0.11 -0.78 5.33 -26.73 -0.14 -0.92 16 3 C -0.03 -0.27 2.50 -92.93 -0.23 -0.50 16 4 H 0.11 0.85 7.24 -51.93 -0.38 0.47 16 5 C 0.52 5.83 6.87 -10.99 -0.08 5.76 16 6 O -0.53 -7.86 13.45 5.55 0.07 -7.79 16 7 N -0.72 -6.93 4.39 -53.81 -0.24 -7.17 16 8 C 0.14 1.50 2.57 -67.93 -0.17 1.32 16 9 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 10 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 11 C -0.12 -1.36 4.75 -26.74 -0.13 -1.48 16 12 C -0.12 -1.88 5.22 -26.73 -0.14 -2.02 16 13 C 0.15 2.98 6.26 -4.04 -0.03 2.96 16 14 N -0.73 -18.66 5.60 -59.91 -0.34 -18.99 16 15 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.18 -1.95 3.53 -104.42 -0.37 -2.31 16 24 C 0.05 0.66 6.66 -82.10 -0.55 0.12 16 25 C -0.07 -0.78 9.32 36.01 0.34 -0.44 16 26 N -0.37 -5.19 12.07 33.42 0.40 -4.79 16 27 O 0.09 1.17 11.20 17.20 0.19 1.37 16 28 C -0.03 -0.26 7.49 -35.30 -0.26 -0.53 16 29 C -0.08 -0.53 10.11 36.01 0.36 -0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.41 7.40 -51.93 -0.38 0.02 16 33 H 0.07 0.41 7.41 -51.93 -0.38 0.02 16 34 H 0.07 0.52 5.63 -51.93 -0.29 0.23 16 35 H 0.40 3.08 7.96 -40.82 -0.32 2.76 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.09 1.06 7.23 -51.93 -0.38 0.68 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.65 5.73 -51.93 -0.30 0.35 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.62 7.56 -51.93 -0.39 0.23 16 LS Contribution 417.10 15.07 6.29 6.29 Total: -1.00 -34.58 417.10 -7.82 -42.41 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.98 Total: 6.24 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.93 Total: -7.33 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.56 Total: -58.48 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.27 Total: -6.42 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.58 -7.82 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds