Wall clock time and date at job start Tue Mar 31 2020 20:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 H 1.09001 * 109.47010 * 305.58533 * 3 2 1 5 5 C 1.50695 * 109.47028 * 185.58769 * 3 2 1 6 6 O 1.21289 * 119.99737 * 239.99877 * 5 3 2 7 7 N 1.34773 * 120.00416 * 60.00088 * 5 3 2 8 8 C 1.46503 * 120.00287 * 180.02562 * 7 5 3 9 9 H 1.09001 * 109.47035 * 324.99971 * 8 7 5 10 10 C 1.52999 * 109.47208 * 84.99415 * 8 7 5 11 11 C 1.52995 * 109.47252 * 205.00027 * 8 7 5 12 12 C 1.52994 * 109.47440 * 64.99550 * 11 8 7 13 13 C 1.53003 * 109.47226 * 180.02562 * 12 11 8 14 14 N 1.46499 * 109.46799 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99647 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00373 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99959 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99848 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47141 * 90.00284 * 19 17 15 21 21 H 1.48504 * 109.46813 * 209.99772 * 19 17 15 22 22 H 1.48496 * 109.47522 * 329.99579 * 19 17 15 23 23 C 1.50696 * 109.47227 * 65.58184 * 3 2 1 24 24 C 1.41381 * 128.00272 * 63.19037 * 23 3 2 25 25 C 1.50703 * 126.80581 * 0.04181 * 24 23 3 26 26 N 1.30177 * 106.39447 * 180.29592 * 24 23 3 27 27 O 1.20926 * 111.60181 * 359.53780 * 26 24 23 28 28 C 1.34031 * 111.56653 * 0.48656 * 27 26 24 29 29 C 1.50708 * 126.77623 * 179.68824 * 28 27 26 30 30 H 1.09003 * 109.46685 * 59.99656 * 1 2 3 31 31 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47008 * 300.00529 * 1 2 3 33 33 H 1.09004 * 109.46643 * 239.99783 * 2 1 3 34 34 H 1.09003 * 109.46685 * 120.00344 * 2 1 3 35 35 H 0.96999 * 119.99875 * 359.97438 * 7 5 3 36 36 H 1.09002 * 109.47335 * 300.00146 * 10 8 7 37 37 H 1.09001 * 109.47192 * 60.00355 * 10 8 7 38 38 H 1.08999 * 109.47502 * 180.02562 * 10 8 7 39 39 H 1.08998 * 109.47122 * 184.99795 * 11 8 7 40 40 H 1.09002 * 109.46735 * 304.99282 * 11 8 7 41 41 H 1.08998 * 109.47163 * 300.00220 * 12 11 8 42 42 H 1.09004 * 109.46858 * 60.00161 * 12 11 8 43 43 H 1.08998 * 109.47181 * 300.00150 * 13 12 11 44 44 H 1.08997 * 109.46792 * 60.00496 * 13 12 11 45 45 H 0.96998 * 120.00664 * 359.97438 * 14 13 12 46 46 H 0.97003 * 120.00347 * 179.97438 * 18 17 15 47 47 H 1.09000 * 109.47347 * 85.25430 * 25 24 23 48 48 H 1.08995 * 109.47147 * 205.25577 * 25 24 23 49 49 H 1.09001 * 109.46841 * 325.25327 * 25 24 23 50 50 H 1.09001 * 109.47048 * 264.90534 * 29 28 27 51 51 H 1.08998 * 109.46809 * 24.90163 * 29 28 27 52 52 H 1.08999 * 109.47114 * 144.90646 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5974 1.9843 -0.8358 5 6 3.5407 1.4446 -0.1383 6 8 4.2289 1.9408 0.7284 7 7 4.1181 0.8951 -1.2251 8 6 5.5770 0.8967 -1.3593 9 1 5.9803 1.8138 -0.9299 10 6 6.1584 -0.3107 -0.6210 11 6 5.9530 0.8186 -2.8403 12 6 5.4794 2.0861 -3.5543 13 6 5.8549 2.0077 -5.0354 14 7 5.4020 3.2217 -5.7189 15 6 5.6282 3.3769 -7.0606 16 1 6.1408 2.6046 -7.6147 17 6 5.1986 4.5270 -7.7084 18 7 4.5733 5.4681 -7.0332 19 14 5.5078 4.7390 -9.5384 20 1 4.3632 4.1802 -10.3018 21 1 5.6537 6.1833 -9.8516 22 1 6.7521 4.0223 -9.9165 23 6 1.6539 2.1118 1.2937 24 6 2.0611 1.7731 2.6045 25 6 2.9859 0.6513 3.0011 26 7 1.4746 2.6189 3.4016 27 8 0.7945 3.4095 2.7893 28 6 0.8355 3.1767 1.4700 29 6 0.1134 3.9474 0.3949 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5678 0.4979 -1.9181 36 1 5.8905 -0.2550 0.4341 37 1 5.7551 -1.2279 -1.0504 38 1 7.2438 -0.3093 -0.7205 39 1 7.0351 0.7303 -2.9362 40 1 5.4761 -0.0520 -3.2907 41 1 4.3973 2.1744 -3.4584 42 1 5.9564 2.9566 -3.1038 43 1 6.9370 1.9191 -5.1317 44 1 5.3776 1.1373 -5.4856 45 1 4.9412 3.9153 -5.2214 46 1 4.2734 6.2719 -7.4858 47 1 4.0195 0.9897 2.9288 48 1 2.7730 0.3504 4.0269 49 1 2.8340 -0.1976 2.3345 50 1 -0.8262 3.4478 0.1586 51 1 -0.0913 4.9581 0.7478 52 1 0.7353 3.9934 -0.4991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717688678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:45 Heat of formation + Delta-G solvation = -18.144576 kcal Electronic energy + Delta-G solvation = -30063.047717 eV Core-core repulsion = 26064.328791 eV Total energy + Delta-G solvation = -3998.718926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.90909 -41.10400 -38.19173 -37.06254 -36.41373 -34.94856 -34.20543 -33.71587 -32.36504 -30.85724 -29.78352 -29.35005 -27.92218 -27.19350 -24.84407 -23.86761 -23.15026 -22.32171 -21.73358 -21.18512 -20.97781 -19.11474 -18.75867 -18.18668 -17.76312 -17.16185 -16.61997 -16.32803 -15.91392 -15.71664 -15.36906 -15.31688 -15.07694 -14.93720 -14.54968 -14.25001 -14.19853 -14.11119 -13.87593 -13.72174 -13.68249 -13.41027 -13.24911 -13.19703 -13.07167 -12.93208 -12.86789 -12.76008 -12.35623 -12.24135 -12.19645 -12.04978 -11.95238 -11.83581 -11.67789 -11.56418 -11.45633 -10.91856 -10.87592 -10.68151 -10.04567 -9.99142 -8.99014 -7.94705 -5.23685 0.50893 1.21923 1.48208 1.49929 1.58403 1.68365 2.19082 2.32367 2.56787 3.22999 3.39131 3.54770 3.56657 3.67835 3.79895 3.98944 4.02663 4.11954 4.14604 4.24450 4.32786 4.40166 4.43758 4.49032 4.58076 4.61672 4.63846 4.68681 4.70546 4.77143 4.79893 4.84613 4.85619 4.90128 4.94644 4.97284 5.04362 5.07563 5.16165 5.16641 5.24843 5.29099 5.35304 5.41476 5.44263 5.45699 5.52427 5.64899 6.28081 6.62733 7.32692 7.33788 7.33858 8.11279 8.33089 9.28991 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002475 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.285418 B =11310.200259 C =12505.999802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.025 4.025 4 H 0.126 0.874 5 C 0.517 3.483 6 O -0.571 6.571 7 N -0.710 5.710 8 C 0.146 3.854 9 H 0.059 0.941 10 C -0.154 4.154 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.150 3.850 14 N -0.750 5.750 15 C -0.246 4.246 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.270 1.270 23 C -0.188 4.188 24 C 0.040 3.960 25 C -0.070 4.070 26 N -0.407 5.407 27 O 0.078 5.922 28 C -0.026 4.026 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.413 0.587 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.016 0.984 44 H 0.028 0.972 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.093 0.907 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -15.661 16.793 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.047 4.047 4 H 0.144 0.856 5 C 0.304 3.696 6 O -0.450 6.450 7 N -0.362 5.362 8 C 0.041 3.959 9 H 0.078 0.922 10 C -0.212 4.212 11 C -0.148 4.148 12 C -0.150 4.150 13 C 0.024 3.976 14 N -0.393 5.393 15 C -0.378 4.378 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.195 1.195 23 C -0.192 4.192 24 C -0.119 4.119 25 C -0.127 4.127 26 N -0.117 5.117 27 O 0.018 5.982 28 C -0.089 4.089 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.203 0.797 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.131 0.869 51 H 0.111 0.889 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.137 -15.189 18.555 25.322 hybrid contribution 0.079 0.676 -1.534 1.678 sum -8.058 -14.513 17.021 23.776 Atomic orbital electron populations 1.21737 0.94012 1.02659 1.02046 1.21607 0.97559 0.91767 1.03834 1.19726 0.91372 0.99383 0.94177 0.85612 1.20739 0.90554 0.76876 0.81469 1.90695 1.65778 1.46569 1.41938 1.46008 1.07793 1.59864 1.22556 1.20902 0.79945 0.99189 0.95819 0.92245 1.22084 1.01637 0.97688 0.99769 1.21747 1.02843 0.97618 0.92556 1.21585 1.01111 0.98328 0.93962 1.20860 0.96277 0.88582 0.91915 1.42652 1.69900 1.20107 1.06634 1.19661 1.29841 1.01764 0.86547 0.90589 1.25591 1.01870 0.96935 1.02539 1.69817 1.46097 1.09522 1.36683 0.85137 0.78084 0.76425 0.80109 1.21100 1.22316 1.19460 1.20436 1.03216 1.00093 0.95455 1.23634 0.99137 0.98813 0.90292 1.20248 0.96684 0.93436 1.02365 1.73792 1.10922 1.04978 1.22017 1.84737 1.52205 1.43769 1.17524 1.24868 1.00608 0.97522 0.85905 1.20587 1.00591 1.00000 0.92241 0.91106 0.91268 0.94109 0.88627 0.91531 0.75016 0.93622 0.90639 0.90878 0.89579 0.89108 0.91938 0.93946 0.96596 0.95447 0.79651 0.94001 0.90776 0.90566 0.88967 0.86866 0.88861 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.73 71.98 0.70 -0.79 16 2 C -0.11 -1.25 5.33 30.59 0.16 -1.08 16 3 C -0.02 -0.41 2.50 -12.29 -0.03 -0.44 16 4 H 0.13 1.66 7.24 -2.39 -0.02 1.65 16 5 C 0.52 11.16 6.87 87.66 0.60 11.76 16 6 O -0.57 -17.19 13.45 -3.06 -0.04 -17.23 16 7 N -0.71 -12.36 4.39 -442.54 -1.94 -14.30 16 8 C 0.15 2.85 2.57 44.99 0.12 2.97 16 9 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 10 C -0.15 -2.46 9.48 71.98 0.68 -1.77 16 11 C -0.11 -2.14 4.75 30.59 0.15 -1.99 16 12 C -0.11 -3.23 5.22 30.59 0.16 -3.07 16 13 C 0.15 5.63 6.26 86.38 0.54 6.17 16 14 N -0.75 -37.84 5.60 -343.45 -1.92 -39.76 16 15 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 18 N -0.97 -59.16 13.06 21.65 0.28 -58.87 16 19 Si 0.97 45.57 29.55 68.60 2.03 47.59 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.19 -4.07 3.53 -19.74 -0.07 -4.14 16 24 C 0.04 1.02 6.66 43.58 0.29 1.31 16 25 C -0.07 -1.49 9.32 71.24 0.66 -0.82 16 26 N -0.41 -11.72 12.07 -49.55 -0.60 -12.32 16 27 O 0.08 2.04 11.20 71.72 0.80 2.84 16 28 C -0.03 -0.53 7.49 25.04 0.19 -0.34 16 29 C -0.08 -0.96 10.11 71.24 0.72 -0.24 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 0.54 7.40 -2.39 -0.02 0.52 16 33 H 0.10 0.71 7.41 -2.38 -0.02 0.69 16 34 H 0.07 0.84 5.63 -2.39 -0.01 0.83 16 35 H 0.41 5.10 7.96 -92.71 -0.74 4.36 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.37 20.06 7.67 -92.71 -0.71 19.35 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.07 1.82 7.23 -2.39 -0.02 1.80 16 48 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.09 1.56 5.73 -2.39 -0.01 1.54 16 50 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.10 1.15 7.56 -2.39 -0.02 1.13 16 Total: -1.00 -76.00 417.10 4.26 -71.74 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.53 Total: 29.58 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 6.18 Total: -9.26 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -4.18 Total: -125.25 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.76 Total: -14.39 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.00 4.26 -71.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.596 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds