Wall clock time and date at job start Tue Mar 31 2020 20:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.08995 * 109.47817 * 305.63873 * 3 2 1 5 5 C 1.50703 * 109.47042 * 185.63300 * 3 2 1 6 6 O 1.21284 * 119.99865 * 240.28172 * 5 3 2 7 7 N 1.34776 * 119.99836 * 60.00480 * 5 3 2 8 8 C 1.46500 * 119.99835 * 180.02562 * 7 5 3 9 9 H 1.08998 * 109.47178 * 34.99683 * 8 7 5 10 10 C 1.52998 * 109.46963 * 274.99618 * 8 7 5 11 11 C 1.52996 * 109.46755 * 155.00312 * 8 7 5 12 12 C 1.53006 * 109.47330 * 294.99548 * 11 8 7 13 13 C 1.52994 * 109.47282 * 180.02562 * 12 11 8 14 14 N 1.46497 * 109.47003 * 179.97438 * 13 12 11 15 15 C 1.36940 * 120.00119 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46925 * 119.99991 * 19 17 15 22 22 H 1.48495 * 109.47280 * 239.99471 * 19 17 15 23 23 C 1.50709 * 109.46878 * 65.63802 * 3 2 1 24 24 C 1.41380 * 128.00367 * 63.46883 * 23 3 2 25 25 C 1.50692 * 126.80420 * 0.03838 * 24 23 3 26 26 N 1.30175 * 106.38906 * 179.89945 * 24 23 3 27 27 O 1.20918 * 111.61132 * 0.38937 * 26 24 23 28 28 C 1.34047 * 111.56290 * 359.74566 * 27 26 24 29 29 C 1.50703 * 126.77598 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 299.99480 * 1 2 3 32 32 H 1.09000 * 109.47537 * 59.99737 * 1 2 3 33 33 H 1.08998 * 109.47004 * 240.00520 * 2 1 3 34 34 H 1.08994 * 109.47161 * 120.00499 * 2 1 3 35 35 H 0.97004 * 119.99947 * 359.97438 * 7 5 3 36 36 H 1.09008 * 109.47136 * 60.00475 * 10 8 7 37 37 H 1.08994 * 109.47198 * 179.97438 * 10 8 7 38 38 H 1.08999 * 109.47701 * 300.00638 * 10 8 7 39 39 H 1.08998 * 109.47898 * 54.99701 * 11 8 7 40 40 H 1.09009 * 109.47052 * 174.99914 * 11 8 7 41 41 H 1.09007 * 109.46501 * 300.00653 * 12 11 8 42 42 H 1.09001 * 109.46796 * 59.99841 * 12 11 8 43 43 H 1.08998 * 109.47607 * 299.99945 * 13 12 11 44 44 H 1.09003 * 109.46994 * 60.00335 * 13 12 11 45 45 H 0.97002 * 120.00440 * 0.02562 * 14 13 12 46 46 H 0.96991 * 120.00202 * 180.02562 * 18 17 15 47 47 H 1.08999 * 109.47421 * 95.39115 * 25 24 23 48 48 H 1.09011 * 109.46921 * 215.38734 * 25 24 23 49 49 H 1.08999 * 109.47358 * 335.38231 * 25 24 23 50 50 H 1.09007 * 109.47213 * 270.00359 * 29 28 27 51 51 H 1.08997 * 109.47189 * 30.00104 * 29 28 27 52 52 H 1.09004 * 109.47072 * 150.00643 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1395 6 8 4.2295 1.9364 0.7293 7 7 4.1170 0.8958 -1.2269 8 6 5.5758 0.8976 -1.3622 9 1 6.0319 0.7748 -0.3799 10 6 6.0296 2.2249 -1.9730 11 6 6.0049 -0.2554 -2.2718 12 6 5.6622 -1.5879 -1.6023 13 6 6.0919 -2.7408 -2.5116 14 7 5.7643 -4.0166 -1.8703 15 6 6.0577 -5.1957 -2.5019 16 1 6.5303 -5.1851 -3.4729 17 6 5.7468 -6.4046 -1.8944 18 7 5.1704 -6.4175 -0.7112 19 14 6.1465 -8.0129 -2.7563 20 1 6.7868 -7.7272 -4.0653 21 1 7.0749 -8.8086 -1.9136 22 1 4.8949 -8.7815 -2.9753 23 6 1.6547 2.1115 1.2944 24 6 2.0674 1.7757 2.6043 25 6 2.9981 0.6582 2.9990 26 7 1.4864 2.6250 3.4015 27 8 0.7920 3.4049 2.7918 28 6 0.8283 3.1697 1.4726 29 6 0.0941 3.9319 0.3997 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5661 0.4988 -1.9196 36 1 5.7239 3.0465 -1.3250 37 1 7.1149 2.2265 -2.0732 38 1 5.5734 2.3479 -2.9552 39 1 5.4800 -0.1818 -3.2242 40 1 7.0799 -0.2014 -2.4442 41 1 6.1872 -1.6615 -0.6499 42 1 4.5873 -1.6419 -1.4298 43 1 5.5673 -2.6674 -3.4642 44 1 7.1669 -2.6866 -2.6836 45 1 5.3388 -4.0262 -0.9986 46 1 4.9535 -7.2621 -0.2866 47 1 4.0116 1.0472 3.0978 48 1 2.6763 0.2366 3.9514 49 1 2.9797 -0.1176 2.2335 50 1 -0.8818 3.4758 0.2331 51 1 -0.0377 4.9670 0.7148 52 1 0.6707 3.9041 -0.5250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717688679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:49 Heat of formation + Delta-G solvation = 3.608469 kcal Electronic energy + Delta-G solvation = -30214.562163 eV Core-core repulsion = 26216.786520 eV Total energy + Delta-G solvation = -3997.775643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.00888 -40.23071 -37.20313 -36.07428 -34.87045 -34.04711 -33.20696 -32.44212 -31.08695 -29.46821 -28.93084 -28.58033 -27.23527 -25.68474 -23.28604 -22.96568 -22.22816 -20.95112 -20.75515 -20.33135 -20.15444 -17.86211 -17.32786 -17.02973 -16.88881 -16.28281 -15.60270 -14.92037 -14.72650 -14.57160 -14.38811 -14.12075 -13.80217 -13.68536 -13.62752 -13.50409 -13.29267 -13.15208 -12.97497 -12.86319 -12.75276 -12.49319 -12.42694 -12.20025 -12.15409 -12.10233 -11.52255 -11.33303 -11.26998 -11.14989 -10.88746 -10.82366 -10.79109 -10.47908 -10.42973 -10.00549 -9.94461 -9.76190 -9.70619 -9.24906 -9.11600 -8.88490 -6.92853 -5.77643 -3.06261 1.33344 2.13964 2.52777 2.95365 3.12822 3.41983 3.47513 3.49908 4.07571 4.28910 4.35597 4.54440 4.54979 4.65787 4.73174 4.83679 4.90007 5.01644 5.04770 5.10159 5.12306 5.15559 5.21301 5.38893 5.41586 5.48037 5.52910 5.55181 5.56282 5.58764 5.60072 5.69369 5.74600 5.78994 5.82140 5.90012 5.93954 5.97911 6.03333 6.09535 6.18288 6.22263 6.33340 6.38444 6.46436 6.84145 6.87653 7.40924 7.69156 8.14239 8.24077 8.41478 9.52444 10.11268 10.45468 11.45368 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.002534 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.109586 B =11046.715671 C =12057.408858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.028 4.028 4 H 0.106 0.894 5 C 0.518 3.482 6 O -0.529 6.529 7 N -0.720 5.720 8 C 0.142 3.858 9 H 0.088 0.912 10 C -0.162 4.162 11 C -0.123 4.123 12 C -0.125 4.125 13 C 0.153 3.847 14 N -0.735 5.735 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.173 4.173 24 C 0.056 3.944 25 C -0.075 4.075 26 N -0.373 5.373 27 O 0.093 5.907 28 C -0.034 4.034 29 C -0.073 4.073 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 22.800 -1.040 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.050 4.050 4 H 0.124 0.876 5 C 0.304 3.696 6 O -0.405 6.405 7 N -0.372 5.372 8 C 0.038 3.962 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.161 4.161 12 C -0.163 4.163 13 C 0.025 3.975 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.178 4.178 24 C -0.103 4.103 25 C -0.132 4.132 26 N -0.081 5.081 27 O 0.030 5.970 28 C -0.098 4.098 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.106 0.894 51 H 0.102 0.898 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.538 23.234 0.785 25.128 hybrid contribution -0.009 -1.414 -1.249 1.886 sum -9.547 21.820 -0.463 23.822 Atomic orbital electron populations 1.21747 0.94661 1.02403 1.01789 1.21630 0.97100 0.92974 1.03915 1.19659 0.92937 0.98056 0.94366 0.87619 1.20358 0.89781 0.77834 0.81662 1.90709 1.64616 1.44892 1.40291 1.46087 1.07965 1.60308 1.22815 1.21032 0.79698 0.94836 1.00650 0.89349 1.22165 1.01568 0.97455 1.00805 1.21853 1.02244 0.93664 0.98372 1.21727 1.01445 0.93496 0.99591 1.20644 0.96866 0.85662 0.94304 1.42384 1.73394 1.00080 1.21992 1.19281 1.32621 0.84310 1.00802 0.91190 1.24749 1.01656 0.97690 0.97004 1.69666 1.47717 1.25216 1.15611 0.86125 0.77491 0.84077 0.78561 1.20569 1.21847 1.21863 1.20196 1.02790 0.99451 0.95315 1.23277 0.99175 0.98404 0.89405 1.20244 0.97471 0.93561 1.01950 1.73813 1.09250 1.04225 1.20803 1.84791 1.51330 1.44470 1.16395 1.24109 1.01218 0.98137 0.86293 1.20322 0.99654 0.99740 0.93313 0.91885 0.92781 0.92478 0.90310 0.90544 0.76512 0.92430 0.91603 0.92563 0.91439 0.90323 0.91988 0.92053 0.96601 0.96550 0.78349 0.93569 0.89482 0.91034 0.90296 0.89406 0.89832 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.73 37.16 0.36 -0.78 16 2 C -0.12 -1.04 5.30 -26.73 -0.14 -1.18 16 3 C -0.03 -0.25 2.45 -92.92 -0.23 -0.48 16 4 H 0.11 0.68 7.10 -51.93 -0.37 0.31 16 5 C 0.52 5.82 6.85 -10.98 -0.08 5.74 16 6 O -0.53 -7.85 13.69 5.55 0.08 -7.78 16 7 N -0.72 -6.93 4.39 -53.81 -0.24 -7.17 16 8 C 0.14 1.50 2.58 -67.93 -0.18 1.32 16 9 H 0.09 1.13 7.57 -51.93 -0.39 0.73 16 10 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 11 C -0.12 -1.35 4.75 -26.73 -0.13 -1.47 16 12 C -0.12 -1.85 5.22 -26.73 -0.14 -1.99 16 13 C 0.15 2.96 6.26 -4.05 -0.03 2.94 16 14 N -0.73 -18.55 5.60 -59.91 -0.34 -18.89 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.17 -1.91 3.54 -104.42 -0.37 -2.28 16 24 C 0.06 0.75 6.66 -82.10 -0.55 0.20 16 25 C -0.07 -0.94 9.03 36.00 0.32 -0.61 16 26 N -0.37 -5.31 12.07 33.42 0.40 -4.91 16 27 O 0.09 1.15 11.20 17.16 0.19 1.34 16 28 C -0.03 -0.33 7.49 -35.30 -0.26 -0.60 16 29 C -0.07 -0.38 10.19 36.01 0.37 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.46 7.40 -51.93 -0.38 0.07 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.63 7.41 -51.93 -0.38 0.25 16 34 H 0.08 0.79 5.71 -51.93 -0.30 0.49 16 35 H 0.40 3.08 7.96 -40.82 -0.32 2.75 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.38 10.18 7.67 -40.82 -0.31 9.86 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.09 1.17 7.74 -51.93 -0.40 0.77 16 48 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 49 H 0.08 0.94 5.73 -51.93 -0.30 0.65 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.09 0.35 7.34 -51.93 -0.38 -0.03 16 LS Contribution 417.28 15.07 6.29 6.29 Total: -1.00 -34.52 417.28 -7.83 -42.36 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.99 Total: 6.66 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.93 Total: -7.73 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.56 Total: -58.46 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.27 Total: -6.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.52 -7.83 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.967 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds