Wall clock time and date at job start Tue Mar 31 2020 20:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.08995 * 109.47817 * 305.63873 * 3 2 1 5 5 C 1.50703 * 109.47042 * 185.63300 * 3 2 1 6 6 O 1.21284 * 119.99865 * 240.28172 * 5 3 2 7 7 N 1.34776 * 119.99836 * 60.00480 * 5 3 2 8 8 C 1.46500 * 119.99835 * 180.02562 * 7 5 3 9 9 H 1.08998 * 109.47178 * 34.99683 * 8 7 5 10 10 C 1.52998 * 109.46963 * 274.99618 * 8 7 5 11 11 C 1.52996 * 109.46755 * 155.00312 * 8 7 5 12 12 C 1.53006 * 109.47330 * 294.99548 * 11 8 7 13 13 C 1.52994 * 109.47282 * 180.02562 * 12 11 8 14 14 N 1.46497 * 109.47003 * 179.97438 * 13 12 11 15 15 C 1.36940 * 120.00119 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47184 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46925 * 119.99991 * 19 17 15 22 22 H 1.48495 * 109.47280 * 239.99471 * 19 17 15 23 23 C 1.50709 * 109.46878 * 65.63802 * 3 2 1 24 24 C 1.41380 * 128.00367 * 63.46883 * 23 3 2 25 25 C 1.50692 * 126.80420 * 0.03838 * 24 23 3 26 26 N 1.30175 * 106.38906 * 179.89945 * 24 23 3 27 27 O 1.20918 * 111.61132 * 0.38937 * 26 24 23 28 28 C 1.34047 * 111.56290 * 359.74566 * 27 26 24 29 29 C 1.50703 * 126.77598 * 179.97438 * 28 27 26 30 30 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 299.99480 * 1 2 3 32 32 H 1.09000 * 109.47537 * 59.99737 * 1 2 3 33 33 H 1.08998 * 109.47004 * 240.00520 * 2 1 3 34 34 H 1.08994 * 109.47161 * 120.00499 * 2 1 3 35 35 H 0.97004 * 119.99947 * 359.97438 * 7 5 3 36 36 H 1.09008 * 109.47136 * 60.00475 * 10 8 7 37 37 H 1.08994 * 109.47198 * 179.97438 * 10 8 7 38 38 H 1.08999 * 109.47701 * 300.00638 * 10 8 7 39 39 H 1.08998 * 109.47898 * 54.99701 * 11 8 7 40 40 H 1.09009 * 109.47052 * 174.99914 * 11 8 7 41 41 H 1.09007 * 109.46501 * 300.00653 * 12 11 8 42 42 H 1.09001 * 109.46796 * 59.99841 * 12 11 8 43 43 H 1.08998 * 109.47607 * 299.99945 * 13 12 11 44 44 H 1.09003 * 109.46994 * 60.00335 * 13 12 11 45 45 H 0.97002 * 120.00440 * 0.02562 * 14 13 12 46 46 H 0.96991 * 120.00202 * 180.02562 * 18 17 15 47 47 H 1.08999 * 109.47421 * 95.39115 * 25 24 23 48 48 H 1.09011 * 109.46921 * 215.38734 * 25 24 23 49 49 H 1.08999 * 109.47358 * 335.38231 * 25 24 23 50 50 H 1.09007 * 109.47213 * 270.00359 * 29 28 27 51 51 H 1.08997 * 109.47189 * 30.00104 * 29 28 27 52 52 H 1.09004 * 109.47072 * 150.00643 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1395 6 8 4.2295 1.9364 0.7293 7 7 4.1170 0.8958 -1.2269 8 6 5.5758 0.8976 -1.3622 9 1 6.0319 0.7748 -0.3799 10 6 6.0296 2.2249 -1.9730 11 6 6.0049 -0.2554 -2.2718 12 6 5.6622 -1.5879 -1.6023 13 6 6.0919 -2.7408 -2.5116 14 7 5.7643 -4.0166 -1.8703 15 6 6.0577 -5.1957 -2.5019 16 1 6.5303 -5.1851 -3.4729 17 6 5.7468 -6.4046 -1.8944 18 7 5.1704 -6.4175 -0.7112 19 14 6.1465 -8.0129 -2.7563 20 1 6.7868 -7.7272 -4.0653 21 1 7.0749 -8.8086 -1.9136 22 1 4.8949 -8.7815 -2.9753 23 6 1.6547 2.1115 1.2944 24 6 2.0674 1.7757 2.6043 25 6 2.9981 0.6582 2.9990 26 7 1.4864 2.6250 3.4015 27 8 0.7920 3.4049 2.7918 28 6 0.8283 3.1697 1.4726 29 6 0.0941 3.9319 0.3997 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5661 0.4988 -1.9196 36 1 5.7239 3.0465 -1.3250 37 1 7.1149 2.2265 -2.0732 38 1 5.5734 2.3479 -2.9552 39 1 5.4800 -0.1818 -3.2242 40 1 7.0799 -0.2014 -2.4442 41 1 6.1872 -1.6615 -0.6499 42 1 4.5873 -1.6419 -1.4298 43 1 5.5673 -2.6674 -3.4642 44 1 7.1669 -2.6866 -2.6836 45 1 5.3388 -4.0262 -0.9986 46 1 4.9535 -7.2621 -0.2866 47 1 4.0116 1.0472 3.0978 48 1 2.6763 0.2366 3.9514 49 1 2.9797 -0.1176 2.2335 50 1 -0.8818 3.4758 0.2331 51 1 -0.0377 4.9670 0.7148 52 1 0.6707 3.9041 -0.5250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717688679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:48 Heat of formation + Delta-G solvation = -18.320361 kcal Electronic energy + Delta-G solvation = -30215.513068 eV Core-core repulsion = 26216.786520 eV Total energy + Delta-G solvation = -3998.726549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.92550 -41.10869 -38.19198 -37.07820 -36.41350 -34.95693 -34.19606 -33.72620 -32.36764 -30.84835 -29.82207 -29.34193 -27.91292 -27.20032 -24.85163 -23.88037 -23.17488 -22.33040 -21.70308 -21.18666 -20.97721 -19.11593 -18.77287 -18.20994 -17.73721 -17.17735 -16.62372 -16.38330 -15.95723 -15.55464 -15.38790 -15.33635 -15.16295 -14.87115 -14.50985 -14.36905 -14.20144 -14.07262 -13.82765 -13.77750 -13.73087 -13.41206 -13.26477 -13.14091 -13.06483 -12.96092 -12.87589 -12.80026 -12.35864 -12.24749 -12.17616 -12.04722 -11.94827 -11.82005 -11.68712 -11.57191 -11.46384 -10.93309 -10.86163 -10.69405 -10.05274 -9.97990 -8.99067 -7.95125 -5.23930 0.53410 1.20921 1.47627 1.48397 1.58535 1.67021 2.22000 2.34249 2.56242 3.21013 3.38938 3.54797 3.57353 3.68482 3.79519 3.95242 4.03766 4.12320 4.14401 4.23670 4.32427 4.39987 4.43569 4.46957 4.54785 4.61651 4.62876 4.69823 4.73676 4.75788 4.78742 4.83915 4.85009 4.90132 4.94821 4.96118 5.03872 5.06294 5.15958 5.17396 5.26052 5.29170 5.33808 5.41272 5.41986 5.45845 5.52642 5.64607 6.27724 6.62749 7.32766 7.33467 7.36392 8.11206 8.32777 9.28720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.002534 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.109586 B =11046.715671 C =12057.408858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.018 4.018 4 H 0.143 0.857 5 C 0.515 3.485 6 O -0.571 6.571 7 N -0.710 5.710 8 C 0.146 3.854 9 H 0.060 0.940 10 C -0.153 4.153 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.150 3.850 14 N -0.750 5.750 15 C -0.244 4.244 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.292 1.292 23 C -0.188 4.188 24 C 0.035 3.965 25 C -0.070 4.070 26 N -0.407 5.407 27 O 0.084 5.916 28 C -0.022 4.022 29 C -0.074 4.074 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.413 0.587 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.016 0.984 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.111 0.889 51 H 0.095 0.905 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 23.930 -4.240 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.040 4.040 4 H 0.160 0.840 5 C 0.302 3.698 6 O -0.449 6.449 7 N -0.363 5.363 8 C 0.041 3.959 9 H 0.079 0.921 10 C -0.211 4.211 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.024 3.976 14 N -0.393 5.393 15 C -0.376 4.376 16 H 0.094 0.906 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.219 1.219 23 C -0.192 4.192 24 C -0.124 4.124 25 C -0.127 4.127 26 N -0.116 5.116 27 O 0.022 5.978 28 C -0.086 4.086 29 C -0.131 4.131 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.250 0.750 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.129 0.871 51 H 0.114 0.886 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.437 24.388 -2.475 26.643 hybrid contribution 0.289 -1.701 -0.276 1.747 sum -10.148 22.688 -2.751 25.006 Atomic orbital electron populations 1.21713 0.93546 1.02321 1.02535 1.21621 0.98024 0.92679 1.03192 1.19693 0.91268 0.98394 0.94608 0.83980 1.20780 0.90691 0.77104 0.81220 1.90703 1.65698 1.46821 1.41724 1.46012 1.07774 1.59697 1.22773 1.20900 0.80119 0.95575 0.99275 0.92139 1.22079 1.02220 0.95656 1.01186 1.21747 1.03095 0.91098 0.98804 1.21585 1.01152 0.94076 0.98158 1.20860 0.96854 0.84715 0.95203 1.42658 1.73302 1.01532 1.21763 1.19695 1.31461 0.85497 1.00925 0.90553 1.25588 1.02394 1.01124 0.97892 1.69823 1.49438 1.25647 1.17229 0.85079 0.76998 0.79746 0.77991 1.18873 1.22239 1.21898 1.20425 1.03403 1.00269 0.95118 1.23523 0.99450 0.98501 0.90880 1.20153 0.96660 0.93690 1.02194 1.73788 1.10539 1.05225 1.22031 1.84736 1.51069 1.44172 1.17812 1.24964 1.00199 0.97477 0.85935 1.20632 1.00375 0.99939 0.92149 0.92446 0.93794 0.89866 0.89336 0.92983 0.74999 0.93956 0.90833 0.90612 0.89122 0.89574 0.93884 0.91912 0.95470 0.96582 0.79660 0.94056 0.91100 0.90756 0.90189 0.87115 0.88586 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.73 71.98 0.70 -1.23 16 2 C -0.12 -1.91 5.30 30.59 0.16 -1.75 16 3 C -0.02 -0.29 2.45 -12.28 -0.03 -0.32 16 4 H 0.14 1.24 7.10 -2.39 -0.02 1.23 16 5 C 0.52 11.16 6.85 87.66 0.60 11.76 16 6 O -0.57 -17.31 13.69 -3.04 -0.04 -17.35 16 7 N -0.71 -12.43 4.39 -442.54 -1.94 -14.37 16 8 C 0.15 2.87 2.58 44.99 0.12 2.99 16 9 H 0.06 1.56 7.57 -2.39 -0.02 1.55 16 10 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 11 C -0.11 -2.14 4.75 30.59 0.15 -1.99 16 12 C -0.11 -3.22 5.22 30.59 0.16 -3.06 16 13 C 0.15 5.63 6.26 86.38 0.54 6.17 16 14 N -0.75 -37.86 5.60 -343.46 -1.92 -39.78 16 15 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 18 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 19 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 C -0.19 -4.02 3.54 -19.73 -0.07 -4.09 16 24 C 0.03 0.96 6.66 43.58 0.29 1.25 16 25 C -0.07 -1.90 9.03 71.23 0.64 -1.25 16 26 N -0.41 -12.04 12.07 -49.55 -0.60 -12.64 16 27 O 0.08 2.08 11.20 71.58 0.80 2.88 16 28 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 29 C -0.07 -0.51 10.19 71.24 0.73 0.22 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.04 0.68 7.40 -2.39 -0.02 0.66 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.25 7.41 -2.39 -0.02 1.23 16 34 H 0.05 1.10 5.71 -2.39 -0.01 1.09 16 35 H 0.41 5.12 7.96 -92.71 -0.74 4.39 16 36 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.37 20.12 7.67 -92.71 -0.71 19.41 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.07 2.12 7.74 -2.39 -0.02 2.10 16 48 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 49 H 0.08 2.09 5.73 -2.39 -0.01 2.08 16 50 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 51 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.11 0.38 7.34 -2.39 -0.02 0.36 16 Total: -1.00 -77.23 417.28 4.24 -72.99 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.53 Total: 29.74 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 6.16 Total: -10.09 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -4.18 Total: -126.04 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.76 Total: -14.47 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.23 4.24 -72.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.666 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds