Wall clock time and date at job start Tue Mar 31 2020 20:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 H 1.09001 * 109.47119 * 305.61566 * 3 2 1 5 5 C 1.50704 * 109.47232 * 65.61867 * 3 2 1 6 6 O 1.21275 * 119.99981 * 22.45044 * 5 3 2 7 7 N 1.34779 * 119.99595 * 202.17108 * 5 3 2 8 8 C 1.46497 * 119.99519 * 175.26622 * 7 5 3 9 9 H 1.09007 * 109.47614 * 325.00093 * 8 7 5 10 10 C 1.53003 * 109.47506 * 85.00108 * 8 7 5 11 11 C 1.53002 * 109.47036 * 205.00259 * 8 7 5 12 12 C 1.52999 * 109.47235 * 65.00136 * 11 8 7 13 13 C 1.53000 * 109.46913 * 180.02562 * 12 11 8 14 14 N 1.46504 * 109.46693 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99556 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00803 * 359.97438 * 15 14 13 17 17 C 1.38821 * 120.00038 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99443 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46754 * 90.00131 * 19 17 15 21 21 H 1.48503 * 109.47146 * 210.00007 * 19 17 15 22 22 H 1.48499 * 109.46920 * 330.00257 * 19 17 15 23 23 C 1.50708 * 109.47096 * 185.61970 * 3 2 1 24 24 C 1.41376 * 128.00371 * 299.67699 * 23 3 2 25 25 C 1.50698 * 126.80703 * 0.03432 * 24 23 3 26 26 N 1.30178 * 106.39287 * 179.89679 * 24 23 3 27 27 O 1.20919 * 111.60176 * 0.38984 * 26 24 23 28 28 C 1.34039 * 111.57246 * 359.74849 * 27 26 24 29 29 C 1.50703 * 126.78114 * 180.02562 * 28 27 26 30 30 H 1.08998 * 109.46918 * 294.71197 * 1 2 3 31 31 H 1.09000 * 109.47320 * 54.71129 * 1 2 3 32 32 H 1.08998 * 109.46779 * 174.71342 * 1 2 3 33 33 H 1.08998 * 109.47407 * 239.99692 * 2 1 3 34 34 H 1.09001 * 109.47279 * 119.99466 * 2 1 3 35 35 H 0.96993 * 120.00369 * 355.26614 * 7 5 3 36 36 H 1.08998 * 109.47398 * 180.02562 * 10 8 7 37 37 H 1.08997 * 109.46691 * 299.99995 * 10 8 7 38 38 H 1.08994 * 109.46905 * 59.99968 * 10 8 7 39 39 H 1.09004 * 109.47233 * 185.00057 * 11 8 7 40 40 H 1.09002 * 109.47246 * 304.99561 * 11 8 7 41 41 H 1.09004 * 109.46946 * 300.00097 * 12 11 8 42 42 H 1.09003 * 109.47349 * 60.00106 * 12 11 8 43 43 H 1.08995 * 109.47033 * 299.99664 * 13 12 11 44 44 H 1.08995 * 109.47421 * 60.00097 * 13 12 11 45 45 H 0.96997 * 120.00351 * 359.97438 * 14 13 12 46 46 H 0.96997 * 119.99648 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.47176 * 89.99552 * 25 24 23 48 48 H 1.08997 * 109.47540 * 210.00314 * 25 24 23 49 49 H 1.09000 * 109.46616 * 329.99860 * 25 24 23 50 50 H 1.08998 * 109.46969 * 269.99845 * 29 28 27 51 51 H 1.09001 * 109.46857 * 29.99648 * 29 28 27 52 52 H 1.08995 * 109.47223 * 149.99793 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8354 5 6 1.6544 2.1117 1.2941 6 8 1.4127 1.4409 2.2751 7 7 1.5837 3.4559 1.3627 8 6 1.1093 4.1027 2.5885 9 1 0.3325 3.4897 3.0457 10 6 2.2755 4.2607 3.5662 11 6 0.5376 5.4809 2.2495 12 6 -0.7048 5.3159 1.3720 13 6 -1.2760 6.6941 1.0325 14 7 -2.4653 6.5361 0.1918 15 6 -3.1500 7.6405 -0.2401 16 1 -2.8137 8.6281 0.0394 17 6 -4.2767 7.4910 -1.0372 18 7 -4.6864 6.2875 -1.3782 19 14 -5.2112 8.9975 -1.6257 20 1 -4.6552 9.4477 -2.9270 21 1 -6.6467 8.6557 -1.7923 22 1 -5.0745 10.0867 -0.6256 23 6 3.5406 1.4448 -0.1391 24 6 4.4959 0.8633 0.7257 25 6 4.2183 0.1012 1.9958 26 7 5.6628 1.1141 0.2060 27 8 5.5668 1.7521 -0.8167 28 6 4.2865 2.0097 -1.1186 29 6 3.7774 2.7757 -2.3123 30 1 -0.3633 0.4296 0.9335 31 1 -0.3634 0.5937 -0.8388 32 1 -0.3633 -1.0233 -0.0947 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.8469 3.9949 0.6005 36 1 1.9224 4.7416 4.4784 37 1 2.6827 3.2789 3.8076 38 1 3.0522 4.8738 3.1091 39 1 0.2663 5.9981 3.1699 40 1 1.2868 6.0630 1.7129 41 1 -0.4335 4.7986 0.4517 42 1 -1.4540 4.7338 1.9086 43 1 -1.5472 7.2116 1.9526 44 1 -0.5267 7.2758 0.4957 45 1 -2.7673 5.6493 -0.0596 46 1 -5.4738 6.1830 -1.9349 47 1 4.1034 -0.9582 1.7661 48 1 5.0490 0.2348 2.6887 49 1 3.3015 0.4757 2.4512 50 1 3.7030 3.8336 -2.0604 51 1 4.4671 2.6485 -3.1467 52 1 2.7939 2.3991 -2.5932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717688680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:52 Heat of formation + Delta-G solvation = -0.158393 kcal Electronic energy + Delta-G solvation = -30251.713144 eV Core-core repulsion = 26253.774157 eV Total energy + Delta-G solvation = -3997.938986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.20265 -40.30731 -37.23685 -35.94454 -34.87066 -34.16114 -33.20504 -32.60714 -31.19916 -29.48580 -28.99836 -28.69073 -27.11173 -25.68879 -23.40846 -22.66127 -22.57983 -20.91832 -20.74216 -20.42973 -20.12205 -17.99853 -17.73616 -17.04367 -16.83540 -16.28083 -15.64779 -14.86629 -14.65046 -14.53678 -14.48444 -14.15271 -13.80932 -13.70045 -13.66661 -13.49739 -13.34830 -13.30699 -13.05602 -12.88241 -12.66101 -12.63152 -12.46672 -12.21263 -12.12921 -11.76295 -11.53769 -11.34387 -11.22274 -11.12461 -10.97885 -10.87895 -10.82086 -10.50298 -10.43486 -10.28486 -10.03419 -9.83146 -9.70387 -9.31780 -9.12272 -8.88434 -6.93439 -5.78025 -3.06634 1.14995 1.89704 2.46616 2.86023 3.06410 3.41907 3.47100 3.48966 3.92328 4.16109 4.37123 4.50168 4.55160 4.58230 4.73820 4.91097 4.92792 5.02070 5.03549 5.07451 5.12337 5.16692 5.32055 5.36036 5.39839 5.40545 5.46524 5.51077 5.54455 5.55905 5.61075 5.61931 5.70276 5.75424 5.84763 5.91753 5.96889 6.05096 6.07177 6.09722 6.17839 6.21012 6.33080 6.38005 6.46688 6.83716 6.87257 7.39563 7.68251 8.03378 8.10940 8.41170 9.52048 10.10761 10.45150 11.44949 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.002490 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.969835 B =11243.613475 C =11608.741314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.029 4.029 4 H 0.105 0.895 5 C 0.528 3.472 6 O -0.533 6.533 7 N -0.718 5.718 8 C 0.142 3.858 9 H 0.089 0.911 10 C -0.162 4.162 11 C -0.123 4.123 12 C -0.124 4.124 13 C 0.153 3.847 14 N -0.734 5.734 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.197 4.197 24 C 0.038 3.962 25 C -0.091 4.091 26 N -0.369 5.369 27 O 0.097 5.903 28 C -0.020 4.020 29 C -0.080 4.080 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.092 0.908 51 H 0.086 0.914 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.579 -11.886 2.849 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.051 4.051 4 H 0.123 0.877 5 C 0.314 3.686 6 O -0.410 6.410 7 N -0.368 5.368 8 C 0.038 3.962 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.162 4.162 12 C -0.162 4.162 13 C 0.025 3.975 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.202 4.202 24 C -0.121 4.121 25 C -0.148 4.148 26 N -0.076 5.076 27 O 0.033 5.967 28 C -0.083 4.083 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.111 0.889 51 H 0.105 0.895 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.585 -12.470 3.898 24.381 hybrid contribution -1.258 0.939 -0.934 1.827 sum 19.327 -11.531 2.964 22.700 Atomic orbital electron populations 1.21828 0.94652 1.02183 1.02743 1.21407 0.96625 0.92972 1.03049 1.19713 0.88956 0.99187 0.97226 0.87742 1.20276 0.76394 0.82309 0.89665 1.90636 1.49223 1.63819 1.37276 1.46122 1.66807 1.06412 1.17506 1.21050 0.96216 0.94247 0.84664 0.89323 1.22161 0.98487 1.02103 0.99246 1.21858 0.98028 0.95053 1.01232 1.21725 0.96190 0.99076 0.99247 1.20645 0.89519 0.93575 0.93742 1.42376 1.29061 1.06712 1.59695 1.19240 1.05889 0.87286 1.24669 0.91243 1.24749 0.98825 0.96552 1.00951 1.69661 1.26818 1.20173 1.41603 0.86190 0.79256 0.82116 0.78646 1.21717 1.21741 1.20772 1.20455 0.96159 1.06232 0.97308 1.23448 0.88009 1.00917 0.99699 1.20459 1.04332 0.99030 0.91014 1.73863 1.23162 1.12379 0.98154 1.84818 1.26710 1.53286 1.31855 1.24309 0.83740 1.00852 0.99448 1.20445 1.02014 0.99362 0.91934 0.91730 0.92522 0.92301 0.91346 0.90337 0.76627 0.91595 0.92299 0.92722 0.90279 0.91486 0.92082 0.91954 0.96525 0.96606 0.78344 0.93521 0.90270 0.90964 0.87940 0.88915 0.89509 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.62 37.16 0.36 -1.19 16 2 C -0.10 -0.95 4.95 -26.73 -0.13 -1.08 16 3 C -0.03 -0.27 2.48 -92.92 -0.23 -0.50 16 4 H 0.10 0.80 7.13 -51.93 -0.37 0.43 16 5 C 0.53 5.92 5.74 -10.98 -0.06 5.86 16 6 O -0.53 -7.29 12.67 5.56 0.07 -7.22 16 7 N -0.72 -7.34 4.53 -53.80 -0.24 -7.58 16 8 C 0.14 1.54 2.54 -67.93 -0.17 1.37 16 9 H 0.09 1.12 7.66 -51.92 -0.40 0.72 16 10 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 11 C -0.12 -1.39 4.75 -26.73 -0.13 -1.51 16 12 C -0.12 -1.86 5.22 -26.73 -0.14 -2.00 16 13 C 0.15 2.97 6.26 -4.04 -0.03 2.94 16 14 N -0.73 -18.52 5.60 -59.91 -0.34 -18.86 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.20 -1.92 4.91 -104.42 -0.51 -2.43 16 24 C 0.04 0.43 7.20 -82.10 -0.59 -0.16 16 25 C -0.09 -0.91 9.26 36.00 0.33 -0.58 16 26 N -0.37 -4.55 12.07 33.42 0.40 -4.15 16 27 O 0.10 1.06 11.20 17.18 0.19 1.25 16 28 C -0.02 -0.17 7.49 -35.30 -0.26 -0.44 16 29 C -0.08 -0.41 10.17 36.01 0.37 -0.05 16 30 H 0.06 0.76 6.96 -51.93 -0.36 0.40 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.79 6.46 -51.93 -0.34 0.46 16 35 H 0.40 3.45 8.61 -40.82 -0.35 3.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 1.14 5.14 -51.93 -0.27 0.87 16 50 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.09 0.40 7.39 -51.93 -0.38 0.02 16 LS Contribution 418.55 15.07 6.31 6.31 Total: -1.00 -33.27 418.55 -8.07 -41.34 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -9.07 Total: 7.45 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.10 Total: -8.39 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.55 Total: -57.96 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: 0.26 Total: -5.98 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.27 -8.07 -41.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717688680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.180 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds