Wall clock time and date at job start Tue Mar 31 2020 20:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08991 * 109.47400 * 304.99826 * 3 2 1 5 5 C 1.53001 * 109.47005 * 65.00265 * 3 2 1 6 6 C 1.53001 * 109.47143 * 184.99746 * 3 2 1 7 7 C 1.50701 * 109.47364 * 174.99934 * 6 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47459 * 59.99812 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47211 * 300.00250 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50311 * 118.54939 * 275.02136 * 11 10 9 29 29 H 1.08996 * 109.47278 * 59.99800 * 1 2 3 30 30 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47484 * 299.99682 * 1 2 3 32 32 H 1.08996 * 109.47155 * 239.99974 * 2 1 3 33 33 H 1.09000 * 109.47295 * 119.99676 * 2 1 3 34 34 H 1.09004 * 109.47205 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47171 * 299.99494 * 5 3 2 36 36 H 1.09004 * 109.47625 * 59.99897 * 5 3 2 37 37 H 1.09006 * 109.47017 * 54.99849 * 6 3 2 38 38 H 1.08996 * 109.47407 * 295.00428 * 6 3 2 39 39 H 0.96995 * 120.00499 * 0.02562 * 9 7 6 40 40 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 41 41 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 42 42 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 43 43 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 44 44 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 45 45 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 46 46 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 50 50 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 51 51 H 1.09006 * 109.42858 * 283.57665 * 28 11 10 52 52 H 1.08998 * 109.43146 * 43.42197 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2659 3.7827 -0.2374 9 7 5.3760 3.1108 -0.3728 10 6 5.8544 4.4903 -0.4923 11 6 7.3563 4.4921 -0.6175 12 6 7.8801 4.5266 -1.8049 13 6 9.3609 4.5235 -2.0527 14 7 10.0830 4.8826 -0.8255 15 6 11.5344 4.7539 -1.0118 16 6 12.0044 5.7744 -2.0162 17 8 11.2085 6.5345 -2.5262 18 7 13.3091 5.8430 -2.3469 19 6 13.7359 6.7677 -3.2648 20 1 13.0272 7.4440 -3.7195 21 6 15.0801 6.8347 -3.6101 22 7 15.9424 6.0114 -3.0571 23 14 15.6617 8.0950 -4.8602 24 1 15.3491 9.4608 -4.3684 25 1 17.1281 7.9611 -5.0527 26 1 14.9700 7.8645 -6.1540 27 6 9.6195 4.0524 0.2987 28 6 8.1818 4.4531 0.6380 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9989 3.1541 1.3076 35 1 0.5488 2.1252 1.3970 36 1 2.0698 1.5875 2.1493 37 1 3.8570 0.8801 -1.0113 38 1 4.0029 0.9837 0.7596 39 1 6.0086 2.3755 -0.3826 40 1 5.5627 5.0541 0.3937 41 1 5.4160 4.9516 -1.3773 42 1 7.2174 4.5591 -2.6570 43 1 9.5975 5.2447 -2.8349 44 1 9.6706 3.5295 -2.3758 45 1 11.7666 3.7528 -1.3752 46 1 12.0391 4.9212 -0.0604 47 1 13.9456 5.2354 -1.9387 48 1 16.8808 6.0584 -3.2978 49 1 9.6484 3.0007 0.0138 50 1 10.2603 4.2180 1.1648 51 1 8.1806 5.4388 1.1035 52 1 7.7561 3.7260 1.3295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718019209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:07 Heat of formation + Delta-G solvation = -72.948760 kcal Electronic energy + Delta-G solvation = -28489.280682 eV Core-core repulsion = 24488.185268 eV Total energy + Delta-G solvation = -4001.095414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21908 -39.29051 -37.82294 -36.77974 -35.39588 -33.94303 -33.04270 -31.27194 -31.10987 -30.77680 -28.86294 -27.66637 -25.89606 -24.51941 -23.86957 -23.55456 -21.90801 -20.87909 -20.13915 -19.24341 -17.91742 -17.82603 -17.11470 -16.40553 -16.13303 -15.94722 -15.55317 -15.20901 -14.96004 -14.65686 -14.57815 -14.27070 -13.98861 -13.88586 -13.82109 -13.68611 -13.32186 -12.96887 -12.81037 -12.68333 -12.36328 -12.28327 -12.23014 -12.04604 -11.86504 -11.68323 -11.50820 -11.36348 -11.19732 -11.08993 -10.98286 -10.90980 -10.87373 -10.48233 -10.44162 -10.22096 -9.99139 -9.49313 -9.25046 -8.89310 -8.48862 -7.99485 -7.85911 -6.42796 -3.83632 1.98955 2.44219 3.19197 3.19460 3.25234 3.29568 3.88159 3.96593 4.23323 4.37833 4.40589 4.51035 4.55263 4.70979 4.83658 4.89892 5.00946 5.09945 5.18950 5.20921 5.23687 5.29486 5.30691 5.33758 5.40108 5.42371 5.50790 5.52880 5.61864 5.63617 5.66946 5.70997 5.71615 5.76871 5.86029 5.89348 5.93635 6.05557 6.09074 6.14515 6.22683 6.27110 6.32157 6.43456 6.90010 7.28053 7.30401 7.32632 7.54076 8.02703 8.05107 8.60657 9.17029 9.53134 10.04996 10.74822 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.001552 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.752245 B =18039.952158 C =18183.907142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.539 6.539 9 N -0.727 5.727 10 C 0.158 3.842 11 C -0.156 4.156 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.509 5.509 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.050 3.950 28 C -0.070 4.070 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.860 -14.857 9.047 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.416 6.416 9 N -0.379 5.379 10 C 0.036 3.964 11 C -0.157 4.157 12 C -0.127 4.127 13 C -0.054 4.054 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.078 4.078 28 C -0.108 4.108 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.096 0.904 51 H 0.099 0.901 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.856 -13.175 8.795 27.809 hybrid contribution 1.429 -0.978 -0.577 1.825 sum -21.427 -14.152 8.218 26.962 Atomic orbital electron populations 1.21806 0.95707 1.01453 1.02128 1.21596 0.96231 0.96078 1.01892 1.20919 0.92663 0.95996 0.99944 0.90398 1.21996 1.01201 1.02136 0.95806 1.21783 0.97904 0.93959 1.04174 1.20750 0.82032 0.91721 0.75834 1.90679 1.54611 1.46703 1.49593 1.46195 1.07506 1.09270 1.74891 1.20309 0.90865 0.82823 1.02436 1.20850 0.93738 1.05481 0.95612 1.22342 0.96658 0.96823 0.96829 1.21253 0.89915 1.00093 0.94165 1.62030 1.03313 1.53524 1.04442 1.21907 0.88481 0.97881 1.00385 1.19734 0.83361 0.87706 0.86384 1.90482 1.53654 1.44917 1.57137 1.41858 1.06373 1.33170 1.38603 1.19655 0.92906 1.12733 1.17639 0.87954 1.25250 0.95674 0.98231 0.98695 1.69603 1.03569 1.37580 1.43587 0.85924 0.77291 0.80553 0.80487 1.19876 1.20987 1.19938 1.22216 0.96097 0.94602 0.94913 1.20390 0.93260 1.02274 0.94854 0.92708 0.92891 0.92387 0.92030 0.91976 0.90735 0.92722 0.93460 0.88976 0.88959 0.76578 0.91048 0.91163 0.87203 0.86465 0.94216 0.93453 0.89190 0.77501 0.91831 0.94912 0.90429 0.90092 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.55 2.04 -90.62 -0.18 -0.74 16 4 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 5 C -0.15 -1.23 8.69 37.16 0.32 -0.91 16 6 C -0.14 -0.89 5.17 -27.88 -0.14 -1.03 16 7 C 0.51 4.95 7.55 -10.98 -0.08 4.86 16 8 O -0.54 -7.27 13.96 5.56 0.08 -7.19 16 9 N -0.73 -6.26 5.55 -61.47 -0.34 -6.61 16 10 C 0.16 1.66 5.72 -5.19 -0.03 1.63 16 11 C -0.16 -1.76 5.26 -100.92 -0.53 -2.29 16 12 C -0.11 -1.37 9.50 -35.97 -0.34 -1.71 16 13 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 14 N -0.51 -8.21 4.46 -237.58 -1.06 -9.27 16 15 C 0.04 0.77 5.44 -4.98 -0.03 0.75 16 16 C 0.44 10.22 7.54 -10.99 -0.08 10.14 16 17 O -0.58 -15.26 13.88 5.55 0.08 -15.18 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.05 0.60 5.59 -3.61 -0.02 0.58 16 28 C -0.07 -0.75 6.04 -28.04 -0.17 -0.92 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.78 5.95 -51.93 -0.31 0.47 16 35 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 2.60 8.46 -40.82 -0.35 2.26 16 40 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.07 0.81 7.85 -51.93 -0.41 0.41 16 42 H 0.11 1.29 7.81 -52.49 -0.41 0.88 16 43 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 44 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 45 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 47 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 50 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 413.02 15.07 6.22 6.22 Total: -1.00 -32.16 413.02 -9.74 -41.89 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -9.02 Total: 9.61 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.34 Total: 2.27 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.73 Total: -53.50 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.15 Total: -22.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.16 -9.74 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718019209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.054 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds