Wall clock time and date at job start Tue Mar 31 2020 20:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 H 1.09003 * 109.46910 * 55.00592 * 3 2 1 5 5 C 1.52996 * 109.47482 * 295.00014 * 3 2 1 6 6 C 1.53001 * 109.47279 * 174.99763 * 3 2 1 7 7 C 1.50701 * 109.47364 * 185.00076 * 6 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97776 * 11 10 9 29 29 H 1.08996 * 109.47306 * 60.00136 * 1 2 3 30 30 H 1.09010 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47413 * 299.99179 * 1 2 3 32 32 H 1.09002 * 109.47707 * 240.00365 * 2 1 3 33 33 H 1.09005 * 109.47461 * 120.00065 * 2 1 3 34 34 H 1.08998 * 109.46841 * 59.99392 * 5 3 2 35 35 H 1.08997 * 109.47573 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.47009 * 300.00151 * 5 3 2 37 37 H 1.09006 * 109.47017 * 64.99991 * 6 3 2 38 38 H 1.09004 * 109.47583 * 305.00762 * 6 3 2 39 39 H 0.96995 * 120.00499 * 0.02562 * 9 7 6 40 40 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 41 41 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 42 42 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 43 43 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 44 44 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 45 45 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 46 46 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 50 50 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 51 51 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 52 52 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4445 0.1258 7 6 4.0568 2.8635 0.2493 8 8 3.2657 3.7828 0.2383 9 7 5.3760 3.1110 0.3720 10 6 5.8542 4.4905 0.4926 11 6 7.3563 4.4924 0.6151 12 6 8.0664 4.6593 -0.4588 13 6 9.5677 4.6708 -0.4605 14 7 10.0765 4.8786 0.9012 15 6 11.5401 4.7585 0.9405 16 6 12.1578 5.8839 0.1512 17 8 11.4485 6.7055 -0.3903 18 7 13.4983 5.9780 0.0480 19 6 14.0601 6.9986 -0.6748 20 1 13.4286 7.7297 -1.1576 21 6 15.4420 7.0924 -0.7860 22 7 16.2103 6.2024 -0.1990 23 14 16.2075 8.4833 -1.7701 24 1 15.1339 9.3452 -2.3268 25 1 17.0824 9.2931 -0.8847 26 1 17.0149 7.9180 -2.8809 27 6 9.4439 3.9282 1.8311 28 6 7.9663 4.3015 1.9756 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5489 2.1252 -1.3969 35 1 1.9980 3.1544 -1.3071 36 1 2.0698 1.5876 -2.1491 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8801 1.0113 39 1 6.0087 2.3758 0.3804 40 1 5.4165 4.9506 1.3784 41 1 5.5616 5.0552 -0.3926 42 1 7.5512 4.7965 -1.3981 43 1 9.9218 5.4755 -1.1048 44 1 9.9355 3.7181 -0.8417 45 1 11.8380 3.8040 0.5064 46 1 11.8812 4.8096 1.9744 47 1 14.0655 5.3211 0.4813 48 1 17.1750 6.2681 -0.2764 49 1 9.5290 2.9163 1.4348 50 1 9.9332 3.9863 2.8033 51 1 7.8799 5.2270 2.5448 52 1 7.4406 3.5037 2.5000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718019210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:10 Heat of formation + Delta-G solvation = -73.066392 kcal Electronic energy + Delta-G solvation = -28494.401759 eV Core-core repulsion = 24493.301245 eV Total energy + Delta-G solvation = -4001.100515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.21897 -39.29166 -37.82538 -36.77914 -35.39664 -33.94559 -33.04387 -31.27300 -31.10985 -30.77645 -28.86211 -27.66487 -25.89692 -24.52199 -23.87224 -23.55432 -21.90868 -20.87899 -20.13711 -19.24679 -17.92016 -17.83049 -17.11067 -16.38629 -16.19460 -15.91460 -15.46234 -15.35599 -14.88079 -14.65533 -14.56627 -14.29685 -14.05986 -13.85994 -13.76600 -13.69209 -13.32959 -12.91002 -12.89642 -12.68399 -12.34405 -12.28147 -12.18063 -12.08763 -11.87625 -11.69175 -11.51062 -11.36310 -11.19048 -11.11842 -10.97975 -10.91136 -10.88252 -10.48142 -10.35039 -10.23431 -9.99228 -9.51528 -9.25107 -8.89345 -8.49072 -7.99693 -7.86095 -6.43210 -3.83945 1.98889 2.44190 3.15293 3.19292 3.26207 3.33324 3.87871 3.96403 4.23257 4.37871 4.40584 4.50939 4.55324 4.70784 4.83558 4.89843 5.00765 5.09878 5.18683 5.21004 5.24018 5.29636 5.30779 5.33814 5.40070 5.42380 5.50685 5.52805 5.62022 5.63520 5.66844 5.71029 5.71678 5.76749 5.86300 5.89316 5.93471 6.05607 6.09051 6.14798 6.22490 6.27532 6.31987 6.43356 6.89917 7.27973 7.30310 7.32499 7.54257 8.02683 8.05324 8.60328 9.16995 9.52987 10.04678 10.74576 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.001564 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.774433 B =17899.637975 C =18159.285331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.539 6.539 9 N -0.727 5.727 10 C 0.158 3.842 11 C -0.156 4.156 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.509 5.509 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.050 3.950 28 C -0.070 4.070 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.040 0.960 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.926 -15.568 3.152 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.416 6.416 9 N -0.379 5.379 10 C 0.036 3.964 11 C -0.157 4.157 12 C -0.126 4.126 13 C -0.054 4.054 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.078 4.078 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.096 0.904 51 H 0.099 0.901 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.896 -13.852 2.930 27.775 hybrid contribution 1.536 -0.932 -0.422 1.845 sum -22.360 -14.784 2.508 26.922 Atomic orbital electron populations 1.21807 0.95709 1.01450 1.02127 1.21598 0.96228 0.96081 1.01891 1.20919 0.92655 0.95987 0.99938 0.90407 1.21996 1.01206 1.02150 0.95823 1.21785 0.97911 0.93953 1.04175 1.20750 0.82029 0.91722 0.75836 1.90679 1.54615 1.46707 1.49587 1.46195 1.07491 1.09289 1.74888 1.20309 0.90976 0.82813 1.02338 1.20852 0.93549 1.05368 0.95913 1.22341 0.95746 0.96752 0.97811 1.21253 0.91338 1.01464 0.91371 1.62034 1.04339 1.50109 1.06827 1.21909 0.87824 0.97512 1.01426 1.19739 0.83037 0.88285 0.86089 1.90484 1.60864 1.43726 1.51074 1.41873 1.04617 1.26998 1.46590 1.19756 0.90274 1.05570 1.27177 0.87841 1.25253 0.96155 0.98500 0.98004 1.69621 1.05251 1.35414 1.44049 0.85810 0.79019 0.80519 0.79065 1.19209 1.20752 1.20795 1.22222 0.94827 0.93489 0.97292 1.20395 0.94202 1.01955 0.94224 0.92376 0.92894 0.92719 0.91964 0.92043 0.92720 0.90730 0.93434 0.88953 0.88982 0.76578 0.91045 0.91166 0.87205 0.86467 0.94216 0.93445 0.89181 0.77506 0.91940 0.94902 0.90430 0.90085 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.15 0.36 -0.49 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.81 16 3 C -0.08 -0.55 2.04 -90.62 -0.18 -0.73 16 4 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 5 C -0.15 -1.27 8.69 37.16 0.32 -0.94 16 6 C -0.14 -0.89 5.17 -27.88 -0.14 -1.03 16 7 C 0.51 4.94 7.55 -10.98 -0.08 4.86 16 8 O -0.54 -7.27 13.97 5.56 0.08 -7.19 16 9 N -0.73 -6.26 5.55 -61.47 -0.34 -6.60 16 10 C 0.16 1.66 5.72 -5.19 -0.03 1.63 16 11 C -0.16 -1.76 5.26 -100.92 -0.53 -2.29 16 12 C -0.11 -1.37 9.50 -35.97 -0.34 -1.71 16 13 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 14 N -0.51 -8.20 4.46 -237.56 -1.06 -9.26 16 15 C 0.04 0.77 5.44 -4.98 -0.03 0.74 16 16 C 0.44 10.22 7.54 -10.99 -0.08 10.14 16 17 O -0.58 -15.24 13.88 5.55 0.08 -15.17 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.05 0.60 5.59 -3.59 -0.02 0.58 16 28 C -0.07 -0.75 6.04 -28.03 -0.17 -0.92 16 29 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 30 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 35 H 0.07 0.80 5.95 -51.93 -0.31 0.49 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 2.60 8.46 -40.82 -0.35 2.26 16 40 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 42 H 0.11 1.28 7.81 -52.49 -0.41 0.87 16 43 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 44 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 45 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 50 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 413.02 15.07 6.22 6.22 Total: -1.00 -32.21 413.02 -9.74 -41.95 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -9.02 Total: 9.55 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.34 Total: 2.27 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.73 Total: -53.50 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.15 Total: -22.35 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.21 -9.74 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718019210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.119 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds