Wall clock time and date at job start Tue Mar 31 2020 20:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 H 1.09003 * 109.46910 * 55.00592 * 3 2 1 5 5 C 1.52996 * 109.47482 * 295.00014 * 3 2 1 6 6 C 1.53001 * 109.47279 * 174.99763 * 3 2 1 7 7 C 1.50701 * 109.47364 * 185.00076 * 6 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97776 * 11 10 9 29 29 H 1.08996 * 109.47306 * 60.00136 * 1 2 3 30 30 H 1.09010 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47413 * 299.99179 * 1 2 3 32 32 H 1.09002 * 109.47707 * 240.00365 * 2 1 3 33 33 H 1.09005 * 109.47461 * 120.00065 * 2 1 3 34 34 H 1.08998 * 109.46841 * 59.99392 * 5 3 2 35 35 H 1.08997 * 109.47573 * 179.97438 * 5 3 2 36 36 H 1.09005 * 109.47009 * 300.00151 * 5 3 2 37 37 H 1.09006 * 109.47017 * 64.99991 * 6 3 2 38 38 H 1.09004 * 109.47583 * 305.00762 * 6 3 2 39 39 H 0.96995 * 120.00499 * 0.02562 * 9 7 6 40 40 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 41 41 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 42 42 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 43 43 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 44 44 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 45 45 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 46 46 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 50 50 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 51 51 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 52 52 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4445 0.1258 7 6 4.0568 2.8635 0.2493 8 8 3.2657 3.7828 0.2383 9 7 5.3760 3.1110 0.3720 10 6 5.8542 4.4905 0.4926 11 6 7.3563 4.4924 0.6151 12 6 8.0664 4.6593 -0.4588 13 6 9.5677 4.6708 -0.4605 14 7 10.0765 4.8786 0.9012 15 6 11.5401 4.7585 0.9405 16 6 12.1578 5.8839 0.1512 17 8 11.4485 6.7055 -0.3903 18 7 13.4983 5.9780 0.0480 19 6 14.0601 6.9986 -0.6748 20 1 13.4286 7.7297 -1.1576 21 6 15.4420 7.0924 -0.7860 22 7 16.2103 6.2024 -0.1990 23 14 16.2075 8.4833 -1.7701 24 1 15.1339 9.3452 -2.3268 25 1 17.0824 9.2931 -0.8847 26 1 17.0149 7.9180 -2.8809 27 6 9.4439 3.9282 1.8311 28 6 7.9663 4.3015 1.9756 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5489 2.1252 -1.3969 35 1 1.9980 3.1544 -1.3071 36 1 2.0698 1.5876 -2.1491 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8801 1.0113 39 1 6.0087 2.3758 0.3804 40 1 5.4165 4.9506 1.3784 41 1 5.5616 5.0552 -0.3926 42 1 7.5512 4.7965 -1.3981 43 1 9.9218 5.4755 -1.1048 44 1 9.9355 3.7181 -0.8417 45 1 11.8380 3.8040 0.5064 46 1 11.8812 4.8096 1.9744 47 1 14.0655 5.3211 0.4813 48 1 17.1750 6.2681 -0.2764 49 1 9.5290 2.9163 1.4348 50 1 9.9332 3.9863 2.8033 51 1 7.8799 5.2270 2.5448 52 1 7.4406 3.5037 2.5000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718019210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:08 Heat of formation + Delta-G solvation = -95.413567 kcal Electronic energy + Delta-G solvation = -28495.370806 eV Core-core repulsion = 24493.301245 eV Total energy + Delta-G solvation = -4002.069561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05236 -40.58485 -39.34004 -37.42885 -36.43360 -35.83505 -34.09613 -33.23667 -31.78924 -31.66617 -29.90108 -28.58515 -27.23137 -25.83463 -24.84008 -24.46232 -22.97442 -21.58724 -21.04530 -20.71093 -19.87824 -18.75725 -17.98602 -17.75835 -17.19081 -16.82365 -16.66873 -16.41683 -16.19425 -15.83842 -15.59103 -15.42904 -15.33416 -15.15313 -14.80822 -14.68728 -14.13979 -14.03070 -13.85541 -13.71565 -13.51042 -13.40877 -13.23720 -12.99607 -12.92605 -12.78812 -12.69974 -12.47116 -12.40112 -12.17304 -12.11939 -12.06822 -11.75116 -11.53208 -11.46800 -11.45010 -11.37839 -10.79143 -10.26744 -10.06240 -9.99459 -9.86216 -9.17091 -8.45902 -5.94046 1.03697 1.36472 1.41966 1.55719 1.70664 2.07073 2.28933 2.45086 2.78816 3.21184 3.39995 3.58847 3.80688 3.81414 3.88748 4.01657 4.18136 4.26551 4.31420 4.37051 4.42367 4.44883 4.47478 4.54009 4.59854 4.63773 4.64723 4.67806 4.73277 4.75448 4.80033 4.85601 4.93100 4.96516 5.08611 5.15833 5.18491 5.20721 5.25268 5.32371 5.38831 5.42477 5.44076 5.55964 5.61063 5.86840 5.97038 6.14276 6.22533 6.61346 6.62592 7.14831 7.32020 7.58473 8.14807 8.71696 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.001564 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.774433 B =17899.637975 C =18159.285331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.058 0.942 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.506 3.494 8 O -0.582 6.582 9 N -0.716 5.716 10 C 0.165 3.835 11 C -0.133 4.133 12 C -0.127 4.127 13 C 0.079 3.921 14 N -0.532 5.532 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.050 3.950 28 C -0.070 4.070 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.051 0.949 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.107 -18.012 4.173 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.294 3.706 8 O -0.462 6.462 9 N -0.368 5.368 10 C 0.042 3.958 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.049 4.049 14 N -0.257 5.257 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.502 6.502 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.077 4.077 28 C -0.107 4.107 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.092 0.908 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.058 -16.347 3.971 29.356 hybrid contribution 1.499 -0.168 -0.714 1.669 sum -22.559 -16.515 3.257 28.147 Atomic orbital electron populations 1.21828 0.95974 1.01895 1.01646 1.21560 0.95992 0.94758 1.02908 1.20895 0.93368 0.96807 0.98391 0.92383 1.21954 1.01304 1.00677 0.97033 1.21821 0.97114 0.91802 1.06310 1.21390 0.81753 0.92727 0.74705 1.90674 1.55714 1.48319 1.51532 1.46053 1.07630 1.08827 1.74288 1.20111 0.90303 0.83914 1.01522 1.20936 0.93663 1.02951 0.95820 1.22197 0.94280 0.99267 0.98866 1.21017 0.93041 1.00054 0.90746 1.61972 1.03627 1.52476 1.07661 1.21777 0.88626 0.95486 1.01471 1.20842 0.82273 0.88967 0.85167 1.90469 1.61620 1.45640 1.52445 1.41934 1.05487 1.26818 1.46959 1.19679 0.90867 1.06614 1.28934 0.90468 1.25982 0.95984 1.00591 0.98557 1.69672 1.05708 1.36338 1.44414 0.84906 0.77922 0.77717 0.78005 1.19955 1.19671 1.19600 1.22357 0.95091 0.93362 0.96887 1.20471 0.93761 1.02791 0.93692 0.92886 0.91953 0.93262 0.91041 0.90824 0.92624 0.93624 0.92424 0.86915 0.86358 0.74915 0.91435 0.92618 0.86787 0.91088 0.93405 0.91254 0.86926 0.77003 0.91353 0.93071 0.88949 0.90822 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.11 -1.00 5.40 30.59 0.17 -0.84 16 3 C -0.08 -0.99 2.04 -10.79 -0.02 -1.01 16 4 H 0.06 0.99 7.95 -2.39 -0.02 0.97 16 5 C -0.15 -2.44 8.69 71.98 0.63 -1.81 16 6 C -0.13 -1.34 5.17 29.85 0.15 -1.19 16 7 C 0.51 9.11 7.55 87.66 0.66 9.77 16 8 O -0.58 -15.80 13.97 -3.04 -0.04 -15.85 16 9 N -0.72 -10.86 5.55 -466.77 -2.59 -13.45 16 10 C 0.17 3.28 5.72 85.63 0.49 3.77 16 11 C -0.13 -2.78 5.26 -15.40 -0.08 -2.86 16 12 C -0.13 -3.19 9.50 26.68 0.25 -2.94 16 13 C 0.08 2.47 5.22 85.39 0.45 2.92 16 14 N -0.53 -16.55 4.46 -905.51 -4.04 -20.59 16 15 C 0.06 1.92 5.44 85.56 0.47 2.38 16 16 C 0.44 20.70 7.54 87.66 0.66 21.36 16 17 O -0.62 -33.88 13.88 -3.07 -0.04 -33.92 16 18 N -0.57 -29.19 5.29 -306.98 -1.62 -30.81 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 23 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 C 0.05 1.05 5.59 86.27 0.48 1.53 16 28 C -0.07 -1.30 6.04 29.76 0.18 -1.12 16 29 H 0.05 0.55 6.56 -2.39 -0.02 0.54 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.05 0.84 6.56 -2.39 -0.02 0.82 16 35 H 0.04 1.01 5.95 -2.39 -0.01 0.99 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 37 H 0.11 0.75 8.14 -2.38 -0.02 0.74 16 38 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.41 4.04 8.46 -92.71 -0.78 3.26 16 40 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 41 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 42 H 0.11 2.71 7.81 -2.91 -0.02 2.68 16 43 H 0.07 2.89 5.98 -2.39 -0.01 2.88 16 44 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 45 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 46 H 0.11 3.26 7.94 -2.39 -0.02 3.24 16 47 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 50 H 0.09 1.69 7.92 -2.39 -0.02 1.67 16 51 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -72.99 413.02 -0.16 -73.16 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.60 Total: 34.40 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.46 Total: 11.07 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -7.97 Total: -113.85 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.09 Total: -49.77 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.99 -0.16 -73.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718019210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.254 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds