Wall clock time and date at job start Tue Mar 31 2020 20:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 H 1.09000 * 109.47488 * 54.62941 * 3 2 1 5 5 C 1.50704 * 109.46602 * 174.62820 * 3 2 1 6 6 O 1.21288 * 119.99586 * 97.67193 * 5 3 2 7 7 N 1.34773 * 119.99972 * 277.66766 * 5 3 2 8 8 C 1.47429 * 125.64675 * 184.62702 * 7 5 3 9 9 C 1.55120 * 104.72199 * 155.81791 * 8 7 5 10 10 C 1.55164 * 101.48687 * 37.29422 * 9 8 7 11 11 C 1.53005 * 110.86992 * 82.76683 * 10 9 8 12 12 C 1.52993 * 110.71863 * 205.96747 * 10 9 8 13 13 N 1.46500 * 109.47746 * 293.52011 * 12 10 9 14 14 C 1.36931 * 120.00607 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00302 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99862 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00292 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47230 * 89.99657 * 18 16 14 20 20 H 1.48498 * 109.47223 * 209.99955 * 18 16 14 21 21 H 1.48501 * 109.46625 * 330.00120 * 18 16 14 22 22 C 1.47019 * 125.64946 * 4.93501 * 7 5 3 23 23 N 1.46498 * 109.47225 * 294.62427 * 3 2 1 24 24 C 1.46761 * 124.34784 * 119.72647 * 23 3 2 25 25 C 1.54658 * 105.38697 * 162.85436 * 24 23 3 26 26 C 1.54634 * 101.67831 * 25.77045 * 25 24 23 27 27 C 1.34419 * 124.35263 * 300.02895 * 23 3 2 28 28 O 1.21274 * 124.94310 * 0.43049 * 27 23 3 29 29 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47180 * 300.00039 * 1 2 3 31 31 H 1.09003 * 109.47072 * 59.99792 * 1 2 3 32 32 H 1.08994 * 109.46832 * 240.00251 * 2 1 3 33 33 H 1.08997 * 109.46728 * 119.99923 * 2 1 3 34 34 H 1.09007 * 110.36561 * 274.74798 * 8 7 5 35 35 H 1.09004 * 110.36596 * 37.06545 * 8 7 5 36 36 H 1.08997 * 111.19807 * 279.18910 * 9 8 7 37 37 H 1.09007 * 110.94120 * 155.28319 * 9 8 7 38 38 H 1.09000 * 109.47110 * 306.38841 * 11 10 9 39 39 H 1.08994 * 109.46823 * 66.39030 * 11 10 9 40 40 H 1.08999 * 109.46585 * 186.38828 * 11 10 9 41 41 H 1.09008 * 109.47165 * 53.52210 * 12 10 9 42 42 H 1.09001 * 109.47480 * 173.52177 * 12 10 9 43 43 H 0.97008 * 119.99522 * 0.02562 * 13 12 10 44 44 H 0.97003 * 119.99964 * 180.02562 * 17 16 14 45 45 H 1.08996 * 109.87979 * 300.43864 * 22 7 5 46 46 H 1.09003 * 109.88044 * 61.60564 * 22 7 5 47 47 H 1.09000 * 110.25163 * 281.98949 * 24 23 3 48 48 H 1.09004 * 110.24291 * 43.98454 * 24 23 3 49 49 H 1.08993 * 111.19793 * 267.60427 * 25 24 23 50 50 H 1.08995 * 110.82534 * 143.77471 * 25 24 23 51 51 H 1.09007 * 110.48691 * 216.30787 * 26 25 24 52 52 H 1.09004 * 110.48919 * 93.66611 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6002 1.9834 0.8380 5 6 3.5411 1.4446 0.1330 6 8 4.2372 1.5531 -0.8543 7 7 4.1100 1.3259 1.3490 8 6 5.5542 1.4089 1.6337 9 6 5.6385 1.8343 3.1231 10 6 4.4485 1.0499 3.7364 11 6 4.8518 -0.3914 4.0545 12 6 3.9256 1.7530 4.9905 13 7 4.9464 1.7028 6.0401 14 6 4.7017 2.2722 7.2611 15 1 3.7559 2.7580 7.4506 16 6 5.6692 2.2251 8.2554 17 7 6.8220 1.6336 8.0244 18 14 5.3350 3.0013 9.9214 19 1 4.7164 1.9949 10.8212 20 1 6.6126 3.4746 10.5122 21 1 4.4104 4.1513 9.7551 22 6 3.3938 1.0859 2.6104 23 7 1.6601 2.0948 -1.2556 24 6 0.8111 3.2885 -1.3448 25 6 1.0463 3.8543 -2.7648 26 6 1.4745 2.5865 -3.5398 27 6 2.0397 1.6734 -2.4743 28 8 2.7338 0.7023 -2.6885 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.0262 0.4374 1.4869 35 1 6.0236 2.1597 0.9980 36 1 5.4967 2.9092 3.2346 37 1 6.5836 1.5190 3.5654 38 1 5.2727 -0.8561 3.1629 39 1 5.5959 -0.3930 4.8509 40 1 3.9739 -0.9516 4.3763 41 1 3.6968 2.7925 4.7556 42 1 3.0222 1.2517 5.3382 43 1 5.7961 1.2668 5.8698 44 1 7.4980 1.6004 8.7193 45 1 2.6841 1.8927 2.7929 46 1 2.8694 0.1315 2.5630 47 1 -0.2363 3.0173 -1.2126 48 1 1.1094 4.0205 -0.5942 49 1 1.8420 4.5991 -2.7655 50 1 0.1253 4.2691 -3.1741 51 1 2.2388 2.8305 -4.2778 52 1 0.6125 2.1240 -4.0207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724272486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:05 Heat of formation + Delta-G solvation = -55.030863 kcal Electronic energy + Delta-G solvation = -30898.466492 eV Core-core repulsion = 26898.148057 eV Total energy + Delta-G solvation = -4000.318435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06357 -39.81765 -37.93791 -36.45347 -35.08490 -34.77881 -32.61006 -31.27951 -30.47276 -29.59606 -27.80477 -27.29322 -26.62448 -25.38892 -23.16682 -22.47731 -22.33392 -22.17606 -20.20218 -18.82835 -18.69215 -17.38718 -17.08704 -16.99497 -16.66451 -15.95413 -15.37883 -14.94698 -14.67535 -14.56890 -14.08583 -13.97798 -13.86205 -13.85084 -13.72752 -13.34227 -13.19704 -13.11472 -12.78831 -12.77591 -12.61011 -12.41569 -12.13132 -11.95390 -11.85400 -11.68589 -11.50875 -11.43593 -11.34761 -11.19474 -11.05518 -10.85533 -10.66925 -10.35015 -10.26363 -10.06353 -9.91223 -9.69636 -9.63217 -8.91529 -8.81431 -8.55508 -6.96006 -5.80550 -3.08972 2.36675 2.65316 2.72852 3.17443 3.40797 3.46104 3.47769 4.07842 4.16066 4.36086 4.48178 4.50437 4.62493 4.65460 4.68233 4.78925 4.86929 4.98612 5.07402 5.11974 5.16559 5.22171 5.34286 5.37257 5.40662 5.44828 5.51023 5.52164 5.57092 5.64132 5.64911 5.70831 5.80326 5.85269 5.93365 5.99292 6.03287 6.04582 6.24103 6.29308 6.33530 6.42220 6.44992 6.59979 6.71134 6.79427 6.99553 7.54584 7.66202 8.09743 8.25568 8.38491 9.50075 10.07115 10.41822 11.42313 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002441 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.005861 B =11467.521937 C =11678.592815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.108 0.892 5 C 0.514 3.486 6 O -0.517 6.517 7 N -0.615 5.615 8 C 0.108 3.892 9 C -0.115 4.115 10 C -0.077 4.077 11 C -0.133 4.133 12 C 0.170 3.830 13 N -0.728 5.728 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.108 3.892 23 N -0.611 5.611 24 C 0.104 3.896 25 C -0.131 4.131 26 C -0.155 4.155 27 C 0.523 3.477 28 O -0.505 6.505 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 1.439 -20.351 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.043 3.957 4 H 0.126 0.874 5 C 0.300 3.700 6 O -0.391 6.391 7 N -0.350 5.350 8 C -0.014 4.014 9 C -0.154 4.154 10 C -0.078 4.078 11 C -0.191 4.191 12 C 0.041 3.959 13 N -0.373 5.373 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.016 4.016 23 N -0.347 5.347 24 C -0.019 4.019 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.310 3.690 28 O -0.378 6.378 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.118 0.882 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.276 1.041 -20.908 25.338 hybrid contribution 0.123 0.388 1.161 1.231 sum -14.153 1.429 -19.746 24.337 Atomic orbital electron populations 1.21701 0.94494 1.02114 1.01834 1.21852 0.97012 0.94098 1.04417 1.20815 0.91923 0.95919 0.87051 0.87429 1.20495 0.90384 0.77174 0.81946 1.90761 1.63983 1.48434 1.35929 1.48513 1.08567 1.71558 1.06388 1.22332 0.80958 1.01294 0.96821 1.22871 0.99356 1.00744 0.92379 1.21783 0.94474 0.97027 0.94496 1.21769 1.02163 0.93734 1.01392 1.20591 0.92505 0.96043 0.86712 1.42343 1.16030 1.68689 1.10261 1.19201 0.99726 1.28716 0.89426 0.91246 1.24725 0.96321 1.01408 0.98441 1.69649 1.06199 1.48705 1.33595 0.86200 0.76862 0.78804 0.84368 1.21739 1.21798 1.20808 1.22229 0.95394 1.00889 0.83058 1.47992 1.51459 1.29957 1.05330 1.22145 0.94636 0.86703 0.98456 1.22607 1.03030 0.97169 0.94035 1.22324 1.03020 0.96075 0.98098 1.20720 0.79202 0.85155 0.83927 1.90724 1.35852 1.27774 1.83424 0.92181 0.92418 0.92714 0.89676 0.90226 0.91572 0.90912 0.90361 0.89283 0.93412 0.90734 0.92619 0.96203 0.96110 0.78005 0.93486 0.91261 0.91248 0.90850 0.90436 0.89931 0.89202 0.88199 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.14 -1.40 5.33 -26.73 -0.14 -1.54 16 3 C 0.15 1.66 2.08 -69.08 -0.14 1.51 16 4 H 0.11 0.95 7.32 -51.93 -0.38 0.57 16 5 C 0.51 7.59 7.00 -10.99 -0.08 7.52 16 6 O -0.52 -9.76 14.35 -16.08 -0.23 -9.99 16 7 N -0.61 -8.41 3.32 -170.38 -0.57 -8.98 16 8 C 0.11 1.53 6.58 -2.41 -0.02 1.51 16 9 C -0.12 -1.71 5.74 -24.46 -0.14 -1.85 16 10 C -0.08 -1.13 0.61 -152.67 -0.09 -1.22 16 11 C -0.13 -1.97 8.28 37.16 0.31 -1.66 16 12 C 0.17 3.10 5.08 -4.05 -0.02 3.08 16 13 N -0.73 -17.22 5.15 -59.91 -0.31 -17.53 16 14 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 18 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.11 1.31 5.41 -3.07 -0.02 1.29 16 23 N -0.61 -6.40 2.24 -166.05 -0.37 -6.77 16 24 C 0.10 0.66 7.31 -3.03 -0.02 0.64 16 25 C -0.13 -0.70 7.19 -25.00 -0.18 -0.88 16 26 C -0.15 -1.21 6.86 -26.74 -0.18 -1.40 16 27 C 0.52 6.62 6.75 -10.86 -0.07 6.54 16 28 O -0.50 -8.77 14.63 -16.07 -0.24 -9.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.42 7.76 -51.93 -0.40 0.02 16 32 H 0.08 1.13 6.61 -51.93 -0.34 0.79 16 33 H 0.08 0.78 6.72 -51.93 -0.35 0.43 16 34 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.08 1.22 8.02 -51.93 -0.42 0.80 16 37 H 0.09 1.38 8.04 -51.92 -0.42 0.97 16 38 H 0.05 0.64 7.41 -51.93 -0.38 0.26 16 39 H 0.07 1.29 6.69 -51.93 -0.35 0.94 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.37 8.10 -51.92 -0.42 -0.05 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.39 9.55 6.21 -40.82 -0.25 9.30 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 0.76 7.41 -51.93 -0.38 0.38 16 46 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 52 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -35.16 403.30 -9.65 -44.81 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -9.03 Total: 5.46 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.68 Total: 5.76 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.52 Total: -59.97 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.47 Total: -18.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.16 -9.65 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.225 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds