Wall clock time and date at job start Tue Mar 31 2020 20:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 H 1.09000 * 109.47488 * 54.62941 * 3 2 1 5 5 C 1.50704 * 109.46602 * 174.62820 * 3 2 1 6 6 O 1.21288 * 119.99586 * 97.67193 * 5 3 2 7 7 N 1.34773 * 119.99972 * 277.66766 * 5 3 2 8 8 C 1.47429 * 125.64675 * 184.62702 * 7 5 3 9 9 C 1.55120 * 104.72199 * 155.81791 * 8 7 5 10 10 C 1.55164 * 101.48687 * 37.29422 * 9 8 7 11 11 C 1.53005 * 110.86992 * 82.76683 * 10 9 8 12 12 C 1.52993 * 110.71863 * 205.96747 * 10 9 8 13 13 N 1.46500 * 109.47746 * 293.52011 * 12 10 9 14 14 C 1.36931 * 120.00607 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00302 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99862 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00292 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47230 * 89.99657 * 18 16 14 20 20 H 1.48498 * 109.47223 * 209.99955 * 18 16 14 21 21 H 1.48501 * 109.46625 * 330.00120 * 18 16 14 22 22 C 1.47019 * 125.64946 * 4.93501 * 7 5 3 23 23 N 1.46498 * 109.47225 * 294.62427 * 3 2 1 24 24 C 1.46761 * 124.34784 * 119.72647 * 23 3 2 25 25 C 1.54658 * 105.38697 * 162.85436 * 24 23 3 26 26 C 1.54634 * 101.67831 * 25.77045 * 25 24 23 27 27 C 1.34419 * 124.35263 * 300.02895 * 23 3 2 28 28 O 1.21274 * 124.94310 * 0.43049 * 27 23 3 29 29 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47180 * 300.00039 * 1 2 3 31 31 H 1.09003 * 109.47072 * 59.99792 * 1 2 3 32 32 H 1.08994 * 109.46832 * 240.00251 * 2 1 3 33 33 H 1.08997 * 109.46728 * 119.99923 * 2 1 3 34 34 H 1.09007 * 110.36561 * 274.74798 * 8 7 5 35 35 H 1.09004 * 110.36596 * 37.06545 * 8 7 5 36 36 H 1.08997 * 111.19807 * 279.18910 * 9 8 7 37 37 H 1.09007 * 110.94120 * 155.28319 * 9 8 7 38 38 H 1.09000 * 109.47110 * 306.38841 * 11 10 9 39 39 H 1.08994 * 109.46823 * 66.39030 * 11 10 9 40 40 H 1.08999 * 109.46585 * 186.38828 * 11 10 9 41 41 H 1.09008 * 109.47165 * 53.52210 * 12 10 9 42 42 H 1.09001 * 109.47480 * 173.52177 * 12 10 9 43 43 H 0.97008 * 119.99522 * 0.02562 * 13 12 10 44 44 H 0.97003 * 119.99964 * 180.02562 * 17 16 14 45 45 H 1.08996 * 109.87979 * 300.43864 * 22 7 5 46 46 H 1.09003 * 109.88044 * 61.60564 * 22 7 5 47 47 H 1.09000 * 110.25163 * 281.98949 * 24 23 3 48 48 H 1.09004 * 110.24291 * 43.98454 * 24 23 3 49 49 H 1.08993 * 111.19793 * 267.60427 * 25 24 23 50 50 H 1.08995 * 110.82534 * 143.77471 * 25 24 23 51 51 H 1.09007 * 110.48691 * 216.30787 * 26 25 24 52 52 H 1.09004 * 110.48919 * 93.66611 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6002 1.9834 0.8380 5 6 3.5411 1.4446 0.1330 6 8 4.2372 1.5531 -0.8543 7 7 4.1100 1.3259 1.3490 8 6 5.5542 1.4089 1.6337 9 6 5.6385 1.8343 3.1231 10 6 4.4485 1.0499 3.7364 11 6 4.8518 -0.3914 4.0545 12 6 3.9256 1.7530 4.9905 13 7 4.9464 1.7028 6.0401 14 6 4.7017 2.2722 7.2611 15 1 3.7559 2.7580 7.4506 16 6 5.6692 2.2251 8.2554 17 7 6.8220 1.6336 8.0244 18 14 5.3350 3.0013 9.9214 19 1 4.7164 1.9949 10.8212 20 1 6.6126 3.4746 10.5122 21 1 4.4104 4.1513 9.7551 22 6 3.3938 1.0859 2.6104 23 7 1.6601 2.0948 -1.2556 24 6 0.8111 3.2885 -1.3448 25 6 1.0463 3.8543 -2.7648 26 6 1.4745 2.5865 -3.5398 27 6 2.0397 1.6734 -2.4743 28 8 2.7338 0.7023 -2.6885 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.0262 0.4374 1.4869 35 1 6.0236 2.1597 0.9980 36 1 5.4967 2.9092 3.2346 37 1 6.5836 1.5190 3.5654 38 1 5.2727 -0.8561 3.1629 39 1 5.5959 -0.3930 4.8509 40 1 3.9739 -0.9516 4.3763 41 1 3.6968 2.7925 4.7556 42 1 3.0222 1.2517 5.3382 43 1 5.7961 1.2668 5.8698 44 1 7.4980 1.6004 8.7193 45 1 2.6841 1.8927 2.7929 46 1 2.8694 0.1315 2.5630 47 1 -0.2363 3.0173 -1.2126 48 1 1.1094 4.0205 -0.5942 49 1 1.8420 4.5991 -2.7655 50 1 0.1253 4.2691 -3.1741 51 1 2.2388 2.8305 -4.2778 52 1 0.6125 2.1240 -4.0207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724272486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:04 Heat of formation + Delta-G solvation = -76.689908 kcal Electronic energy + Delta-G solvation = -30899.405699 eV Core-core repulsion = 26898.148057 eV Total energy + Delta-G solvation = -4001.257642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99168 -40.86475 -39.15438 -37.37030 -36.43515 -35.86002 -34.22000 -32.12797 -31.93084 -30.89394 -28.43574 -28.16523 -27.85322 -27.00086 -24.52373 -23.99275 -23.14995 -22.71274 -21.20215 -20.14056 -19.64895 -19.15592 -18.21843 -17.82786 -17.47757 -17.07783 -16.53749 -16.40271 -15.79623 -15.58235 -15.40954 -15.27294 -15.16855 -14.79344 -14.60862 -14.55338 -14.20447 -14.10014 -13.91903 -13.76913 -13.51765 -13.36217 -13.28651 -13.00331 -12.96068 -12.86009 -12.79097 -12.65346 -12.41270 -12.17122 -12.11519 -12.10709 -11.95751 -11.82954 -11.65612 -11.50227 -11.42525 -11.02452 -10.88208 -10.58037 -9.74866 -9.61088 -8.92702 -7.90837 -5.17739 1.41189 1.50468 1.51168 1.59247 1.59847 1.89530 2.22150 2.59336 3.25275 3.39503 3.44930 3.51721 3.65324 3.75659 3.79931 3.86315 3.92064 4.09610 4.17424 4.19392 4.21988 4.33072 4.35347 4.36819 4.45781 4.56789 4.66073 4.68356 4.70358 4.78402 4.80347 4.85572 4.89060 4.97269 5.03748 5.05340 5.09645 5.11713 5.12653 5.20016 5.21724 5.24076 5.32837 5.35283 5.48390 5.55205 5.58290 6.21790 6.31647 6.44624 7.04427 7.32450 7.39256 8.16787 8.38813 9.32817 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002441 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.005861 B =11467.521937 C =11678.592815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.151 3.849 4 H 0.140 0.860 5 C 0.507 3.493 6 O -0.566 6.566 7 N -0.613 5.613 8 C 0.113 3.887 9 C -0.109 4.109 10 C -0.070 4.070 11 C -0.127 4.127 12 C 0.169 3.831 13 N -0.740 5.740 14 C -0.237 4.237 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.969 3.031 19 H -0.289 1.289 20 H -0.300 1.300 21 H -0.269 1.269 22 C 0.114 3.886 23 N -0.612 5.612 24 C 0.096 3.904 25 C -0.120 4.120 26 C -0.151 4.151 27 C 0.504 3.496 28 O -0.566 6.566 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.032 0.968 43 H 0.376 0.624 44 H 0.249 0.751 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.125 0.875 51 H 0.093 0.907 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 2.720 -20.317 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.044 3.956 4 H 0.158 0.842 5 C 0.295 3.705 6 O -0.443 6.443 7 N -0.347 5.347 8 C -0.010 4.010 9 C -0.147 4.147 10 C -0.071 4.071 11 C -0.185 4.185 12 C 0.043 3.957 13 N -0.384 5.384 14 C -0.369 4.369 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.798 3.202 19 H -0.216 1.216 20 H -0.227 1.227 21 H -0.194 1.194 22 C -0.009 4.009 23 N -0.346 5.346 24 C -0.025 4.025 25 C -0.158 4.158 26 C -0.191 4.191 27 C 0.294 3.706 28 O -0.444 6.444 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.209 0.791 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.143 0.857 51 H 0.112 0.888 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.996 2.366 -20.863 27.654 hybrid contribution 1.247 -0.009 1.107 1.667 sum -16.749 2.358 -19.757 26.008 Atomic orbital electron populations 1.21660 0.92063 1.02750 1.02890 1.21799 0.98967 0.93255 1.02864 1.20937 0.89115 0.97021 0.88569 0.84233 1.21293 0.92002 0.75948 0.81234 1.90745 1.65422 1.50685 1.37494 1.48571 1.08293 1.70993 1.06860 1.22205 0.81813 1.00962 0.96028 1.22743 0.99016 1.00231 0.92733 1.21648 0.95095 0.96386 0.93945 1.21695 1.01828 0.94083 1.00864 1.20739 0.91566 0.96725 0.86713 1.42549 1.16871 1.68239 1.10710 1.19621 0.99557 1.27313 0.90417 0.90460 1.25493 0.96476 1.02936 1.01946 1.69806 1.07149 1.50831 1.34328 0.85204 0.76353 0.78246 0.80354 1.21591 1.22719 1.19375 1.22263 0.94532 1.03076 0.80997 1.48213 1.51145 1.30740 1.04521 1.22512 0.95391 0.85343 0.99284 1.22658 1.04410 0.95644 0.93059 1.22369 1.03381 0.96415 0.96930 1.21627 0.78445 0.84887 0.85683 1.90681 1.38674 1.30535 1.84558 0.91862 0.90227 0.92648 0.93358 0.89708 0.91629 0.91825 0.91098 0.90645 0.92245 0.93779 0.91453 0.95751 0.95009 0.79071 0.94215 0.88912 0.89029 0.87926 0.89473 0.90508 0.85717 0.88811 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.80 71.98 0.71 -1.00 16 2 C -0.13 -2.50 5.33 30.60 0.16 -2.33 16 3 C 0.15 3.03 2.08 44.25 0.09 3.12 16 4 H 0.14 1.87 7.32 -2.39 -0.02 1.85 16 5 C 0.51 14.70 7.00 87.66 0.61 15.32 16 6 O -0.57 -22.04 14.35 17.63 0.25 -21.78 16 7 N -0.61 -16.03 3.32 -811.35 -2.70 -18.73 16 8 C 0.11 3.19 6.58 86.93 0.57 3.76 16 9 C -0.11 -3.22 5.74 32.06 0.18 -3.03 16 10 C -0.07 -1.95 0.61 -50.99 -0.03 -1.98 16 11 C -0.13 -3.64 8.28 71.98 0.60 -3.04 16 12 C 0.17 5.88 5.08 86.38 0.44 6.32 16 13 N -0.74 -34.72 5.15 -343.46 -1.77 -36.49 16 14 C -0.24 -12.54 9.99 84.03 0.84 -11.70 16 15 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 16 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 17 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 18 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 C 0.11 2.44 5.41 86.73 0.47 2.91 16 23 N -0.61 -11.73 2.24 -797.85 -1.79 -13.52 16 24 C 0.10 0.88 7.31 86.89 0.64 1.51 16 25 C -0.12 -0.91 7.19 31.72 0.23 -0.68 16 26 C -0.15 -2.14 6.86 30.59 0.21 -1.93 16 27 C 0.50 12.72 6.75 87.90 0.59 13.31 16 28 O -0.57 -20.73 14.63 17.67 0.26 -20.47 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.69 7.76 -2.39 -0.02 0.67 16 32 H 0.05 1.31 6.61 -2.39 -0.02 1.29 16 33 H 0.08 1.48 6.72 -2.39 -0.02 1.46 16 34 H 0.07 1.86 7.69 -2.38 -0.02 1.85 16 35 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.07 2.19 8.02 -2.39 -0.02 2.17 16 37 H 0.07 2.43 8.04 -2.38 -0.02 2.41 16 38 H 0.06 1.54 7.41 -2.39 -0.02 1.53 16 39 H 0.04 1.54 6.69 -2.39 -0.02 1.52 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.02 0.85 8.10 -2.38 -0.02 0.83 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.38 18.95 6.21 -92.70 -0.58 18.38 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.09 1.63 7.41 -2.39 -0.02 1.61 16 46 H 0.09 1.64 6.54 -2.39 -0.02 1.62 16 47 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.33 403.30 3.67 -76.66 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.33 Total: 28.34 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.78 Total: 16.76 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -5.97 Total: -126.43 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: 0.51 Total: -42.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -80.33 3.67 -76.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.032 kcal (2) G-P(sol) polarization free energy of solvation -80.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds