Wall clock time and date at job start Tue Mar 31 2020 20:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 H 1.09003 * 109.46569 * 305.41008 * 3 2 1 5 5 C 1.50702 * 109.46927 * 185.41324 * 3 2 1 6 6 O 1.21278 * 119.99764 * 264.46691 * 5 3 2 7 7 N 1.34773 * 120.00053 * 84.47754 * 5 3 2 8 8 C 1.47026 * 125.64872 * 5.04690 * 7 5 3 9 9 C 1.54321 * 107.26952 * 181.02810 * 8 7 5 10 10 C 1.55160 * 102.94428 * 22.19252 * 9 8 7 11 11 C 1.52997 * 111.00400 * 82.61249 * 10 9 8 12 12 C 1.52997 * 111.00498 * 206.42489 * 10 9 8 13 13 N 1.46502 * 109.47322 * 298.54818 * 12 10 9 14 14 C 1.36936 * 120.00352 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47071 * 59.99606 * 18 16 14 20 20 H 1.48503 * 109.46915 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46886 * 299.99432 * 18 16 14 22 22 C 1.47425 * 125.64649 * 184.74749 * 7 5 3 23 23 N 1.46497 * 109.47142 * 65.40824 * 3 2 1 24 24 C 1.46761 * 124.35241 * 239.72503 * 23 3 2 25 25 C 1.54654 * 105.38499 * 162.85779 * 24 23 3 26 26 C 1.54632 * 101.68445 * 25.76646 * 25 24 23 27 27 C 1.34424 * 124.34548 * 60.02894 * 23 3 2 28 28 O 1.21275 * 124.94657 * 0.42558 * 27 23 3 29 29 H 1.08997 * 109.46869 * 300.00480 * 1 2 3 30 30 H 1.09002 * 109.46482 * 60.00168 * 1 2 3 31 31 H 1.08993 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46482 * 119.99832 * 2 1 3 33 33 H 1.08997 * 109.46869 * 239.99520 * 2 1 3 34 34 H 1.08996 * 109.88066 * 300.44420 * 8 7 5 35 35 H 1.08992 * 109.88006 * 61.45591 * 8 7 5 36 36 H 1.09000 * 110.72076 * 140.55584 * 9 8 7 37 37 H 1.09003 * 110.71815 * 263.65145 * 9 8 7 38 38 H 1.09003 * 109.47232 * 61.45124 * 11 10 9 39 39 H 1.09001 * 109.47544 * 181.45701 * 11 10 9 40 40 H 1.09005 * 109.46857 * 301.45476 * 11 10 9 41 41 H 1.09003 * 109.47359 * 58.54217 * 12 10 9 42 42 H 1.08999 * 109.47429 * 178.54751 * 12 10 9 43 43 H 0.97004 * 119.99465 * 359.97438 * 13 12 10 44 44 H 0.97003 * 119.99559 * 180.02562 * 17 16 14 45 45 H 1.09003 * 110.36262 * 274.74005 * 22 7 5 46 46 H 1.08995 * 110.36988 * 37.06173 * 22 7 5 47 47 H 1.09004 * 110.24635 * 281.98691 * 24 23 3 48 48 H 1.09007 * 110.24441 * 43.98522 * 24 23 3 49 49 H 1.09007 * 111.19190 * 267.59528 * 25 24 23 50 50 H 1.09000 * 110.85963 * 143.78945 * 25 24 23 51 51 H 1.08997 * 110.48669 * 216.30972 * 26 25 24 52 52 H 1.09003 * 110.59801 * 93.72055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9834 -0.8376 5 6 3.5411 1.4445 -0.1340 6 8 4.2382 1.5136 0.8560 7 7 4.1088 1.3696 -1.3541 8 6 3.3897 1.3869 -2.6363 9 6 4.4444 1.2529 -3.7549 10 6 5.6461 0.5990 -3.0230 11 6 5.4712 -0.9180 -2.9286 12 6 6.9661 0.9541 -3.7103 13 7 6.9547 0.4432 -5.0833 14 6 8.0380 0.6421 -5.8970 15 1 8.9006 1.1761 -5.5267 16 6 8.0274 0.1575 -7.1976 17 7 6.9762 -0.4937 -7.6488 18 14 9.5049 0.4295 -8.3078 19 1 10.7037 -0.2012 -7.6997 20 1 9.2444 -0.1800 -9.6367 21 1 9.7406 1.8867 -8.4699 22 6 5.5542 1.2631 -1.6241 23 7 1.6610 2.0945 1.2559 24 6 0.8215 3.2950 1.3453 25 6 0.3384 3.3494 2.8134 26 6 1.4610 2.5744 3.5415 27 6 2.0422 1.6734 2.4742 28 8 2.7494 0.7114 2.6869 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 2.6927 0.5502 -2.6818 35 1 2.8482 2.3266 -2.7449 36 1 4.0802 0.6056 -4.5527 37 1 4.7157 2.2324 -4.1486 38 1 5.4278 -1.3419 -3.9318 39 1 6.3147 -1.3482 -2.3885 40 1 4.5464 -1.1448 -2.3980 41 1 7.0872 2.0373 -3.7269 42 1 7.7938 0.5042 -3.1621 43 1 6.1800 -0.0367 -5.4157 44 1 6.9690 -0.8327 -8.5576 45 1 6.0110 2.2527 -1.6406 46 1 6.0350 0.6350 -0.8741 47 1 1.4062 4.1829 1.1045 48 1 -0.0313 3.2099 0.6716 49 1 -0.6219 2.8472 2.9311 50 1 0.2835 4.3794 3.1660 51 1 1.0480 1.9818 4.3577 52 1 2.2203 3.2610 3.9160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724272487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:07 Heat of formation + Delta-G solvation = -55.474773 kcal Electronic energy + Delta-G solvation = -30821.205857 eV Core-core repulsion = 26820.868172 eV Total energy + Delta-G solvation = -4000.337685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07013 -39.80893 -37.88166 -36.46887 -35.09461 -34.75000 -32.60958 -31.33708 -30.29827 -29.42751 -28.01072 -27.73856 -26.37221 -25.19028 -23.06100 -22.53513 -22.37403 -22.20271 -20.22637 -19.05187 -18.44108 -17.53956 -17.11847 -16.83865 -16.30830 -16.00018 -15.56723 -15.13863 -14.62399 -14.51582 -14.14380 -13.97781 -13.92408 -13.79183 -13.49795 -13.30842 -13.24294 -13.09004 -12.88370 -12.85098 -12.54473 -12.41516 -12.13280 -12.00301 -11.87610 -11.66629 -11.56043 -11.45246 -11.32214 -11.20468 -11.03484 -10.81027 -10.55053 -10.34960 -10.27776 -10.03927 -9.91464 -9.66642 -9.65912 -8.87964 -8.80178 -8.54558 -6.92472 -5.77750 -3.05663 2.39143 2.63138 2.68970 3.18251 3.43883 3.48419 3.49231 4.06722 4.12083 4.33519 4.44961 4.56406 4.58996 4.63780 4.73398 4.77570 4.81906 4.95214 5.08275 5.10118 5.14291 5.22786 5.29373 5.32706 5.38022 5.41569 5.48222 5.51258 5.58783 5.60126 5.65747 5.75885 5.79039 5.90829 5.97308 5.99792 6.04951 6.11593 6.25632 6.28508 6.32682 6.43270 6.51439 6.63830 6.75728 6.84455 6.97819 7.55569 7.69502 8.09951 8.26055 8.41619 9.53144 10.10224 10.45656 11.45149 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002297 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.107307 B =12186.508561 C =12428.152946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.151 3.849 4 H 0.105 0.895 5 C 0.512 3.488 6 O -0.514 6.514 7 N -0.614 5.614 8 C 0.097 3.903 9 C -0.115 4.115 10 C -0.078 4.078 11 C -0.128 4.128 12 C 0.169 3.831 13 N -0.728 5.728 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.120 3.880 23 N -0.613 5.613 24 C 0.104 3.896 25 C -0.129 4.129 26 C -0.156 4.156 27 C 0.521 3.479 28 O -0.501 6.501 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.099 0.901 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.742 7.573 18.191 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.044 3.956 4 H 0.123 0.877 5 C 0.298 3.702 6 O -0.388 6.388 7 N -0.350 5.350 8 C -0.025 4.025 9 C -0.153 4.153 10 C -0.079 4.079 11 C -0.185 4.185 12 C 0.041 3.959 13 N -0.372 5.372 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.003 4.003 23 N -0.349 5.349 24 C -0.019 4.019 25 C -0.167 4.167 26 C -0.196 4.196 27 C 0.308 3.692 28 O -0.374 6.374 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.117 0.883 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.841 7.105 18.818 27.561 hybrid contribution 0.587 0.139 -1.018 1.183 sum -18.254 7.245 17.800 26.506 Atomic orbital electron populations 1.21697 0.94528 1.02125 1.01750 1.21819 0.96903 0.94003 1.04481 1.20807 0.91953 0.95899 0.86938 0.87684 1.20504 0.90358 0.77260 0.82056 1.90773 1.63877 1.48061 1.36078 1.48508 1.08416 1.72926 1.05146 1.22178 0.95955 1.00956 0.83454 1.22652 0.93873 1.02459 0.96269 1.21977 0.96757 0.95943 0.93189 1.21657 1.00633 0.93622 1.02601 1.20547 0.92089 0.96347 0.86905 1.42298 1.19517 1.67528 1.07893 1.19180 0.95116 1.29585 0.93034 0.91291 1.24712 0.97756 1.01045 0.97425 1.69643 1.29055 1.42663 1.16971 0.86270 0.82275 0.77613 0.80039 1.21303 1.21733 1.21325 1.22322 0.80620 1.00600 0.96757 1.48012 1.52295 1.29220 1.05365 1.22131 0.94317 0.87511 0.97983 1.22595 0.98478 1.01862 0.93787 1.22332 0.99435 0.99608 0.98215 1.20723 0.79593 0.84910 0.83949 1.90741 1.35334 1.27859 1.83426 0.92666 0.92560 0.92165 0.89648 0.90233 0.91534 0.91761 0.89391 0.90124 0.91148 0.92684 0.93653 0.96100 0.96011 0.78115 0.93505 0.91380 0.90583 0.91198 0.90296 0.89931 0.89221 0.88274 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.80 37.16 0.36 -0.71 16 2 C -0.13 -1.37 5.34 -26.73 -0.14 -1.51 16 3 C 0.15 1.62 2.21 -69.08 -0.15 1.46 16 4 H 0.11 0.85 7.25 -51.93 -0.38 0.47 16 5 C 0.51 7.52 7.00 -10.99 -0.08 7.44 16 6 O -0.51 -9.78 14.28 -16.49 -0.24 -10.02 16 7 N -0.61 -8.35 3.31 -170.39 -0.56 -8.91 16 8 C 0.10 1.09 5.78 -3.06 -0.02 1.07 16 9 C -0.11 -1.59 5.38 -24.90 -0.13 -1.73 16 10 C -0.08 -1.22 0.62 -152.24 -0.09 -1.31 16 11 C -0.13 -2.02 8.41 37.16 0.31 -1.71 16 12 C 0.17 3.31 5.23 -4.04 -0.02 3.29 16 13 N -0.73 -17.64 5.17 -59.91 -0.31 -17.95 16 14 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 18 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.12 1.80 5.83 -2.41 -0.01 1.79 16 23 N -0.61 -6.22 2.25 -166.05 -0.37 -6.60 16 24 C 0.10 0.61 7.31 -3.03 -0.02 0.59 16 25 C -0.13 -0.58 7.19 -25.00 -0.18 -0.76 16 26 C -0.16 -1.19 6.86 -26.74 -0.18 -1.37 16 27 C 0.52 6.54 6.79 -10.86 -0.07 6.46 16 28 O -0.50 -8.74 14.55 -16.48 -0.24 -8.98 16 29 H 0.05 0.41 7.77 -51.93 -0.40 0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.14 6.64 -51.93 -0.34 0.80 16 33 H 0.08 0.79 7.51 -51.93 -0.39 0.40 16 34 H 0.07 0.65 7.51 -51.93 -0.39 0.26 16 35 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 36 H 0.09 1.28 7.95 -51.93 -0.41 0.86 16 37 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 38 H 0.07 1.23 7.19 -51.93 -0.37 0.86 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 41 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.38 9.64 6.37 -40.82 -0.26 9.38 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 46 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -35.63 406.53 -9.80 -45.42 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -9.22 Total: 4.74 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.68 Total: 5.84 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.52 Total: -60.33 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.48 Total: -19.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.63 -9.80 -45.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.050 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds