Wall clock time and date at job start Tue Mar 31 2020 20:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 H 1.08997 * 109.46678 * 305.39665 * 3 2 1 5 5 C 1.50690 * 109.46945 * 185.39371 * 3 2 1 6 6 O 1.21284 * 120.00080 * 264.26753 * 5 3 2 7 7 N 1.34782 * 120.00341 * 84.27310 * 5 3 2 8 8 C 1.48120 * 127.02716 * 4.61927 * 7 5 3 9 9 C 1.54602 * 103.42178 * 219.28950 * 8 7 5 10 10 C 1.54621 * 102.91040 * 322.87167 * 9 8 7 11 11 C 1.52998 * 110.32956 * 262.80347 * 10 9 8 12 12 C 1.53004 * 110.32251 * 140.59176 * 10 9 8 13 13 N 1.46494 * 109.47505 * 64.37745 * 12 10 9 14 14 C 1.36932 * 120.00075 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99612 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47194 * 89.99838 * 18 16 14 20 20 H 1.48494 * 109.46897 * 209.99982 * 18 16 14 21 21 H 1.48507 * 109.46971 * 329.99578 * 18 16 14 22 22 C 1.47485 * 127.03778 * 184.94386 * 7 5 3 23 23 N 1.46498 * 109.47217 * 65.39396 * 3 2 1 24 24 C 1.46767 * 124.34785 * 240.00398 * 23 3 2 25 25 C 1.54484 * 105.54858 * 162.96066 * 24 23 3 26 26 C 1.54856 * 101.65952 * 25.42925 * 25 24 23 27 27 C 1.34418 * 124.35106 * 60.01900 * 23 3 2 28 28 O 1.21280 * 124.94139 * 0.37059 * 27 23 3 29 29 H 1.08999 * 109.47051 * 300.00245 * 1 2 3 30 30 H 1.09003 * 109.47301 * 59.99881 * 1 2 3 31 31 H 1.09005 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47051 * 239.99755 * 2 1 3 33 33 H 1.09005 * 109.46906 * 119.99780 * 2 1 3 34 34 H 1.08994 * 110.66402 * 337.77191 * 8 7 5 35 35 H 1.08998 * 110.65790 * 100.89201 * 8 7 5 36 36 H 1.08999 * 110.83122 * 204.45283 * 9 8 7 37 37 H 1.08995 * 110.72895 * 81.24348 * 9 8 7 38 38 H 1.08997 * 109.47198 * 175.62429 * 11 10 9 39 39 H 1.09001 * 109.46943 * 295.63042 * 11 10 9 40 40 H 1.09005 * 109.46702 * 55.62604 * 11 10 9 41 41 H 1.09010 * 109.46665 * 184.38341 * 12 10 9 42 42 H 1.09007 * 109.47113 * 304.37195 * 12 10 9 43 43 H 0.96997 * 119.99994 * 0.02562 * 13 12 10 44 44 H 0.97002 * 119.99496 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.91009 * 273.87539 * 22 7 5 46 46 H 1.09008 * 109.90813 * 34.95843 * 22 7 5 47 47 H 1.08998 * 110.24283 * 281.99775 * 24 23 3 48 48 H 1.08994 * 110.24847 * 43.91418 * 24 23 3 49 49 H 1.09001 * 110.96754 * 143.57346 * 25 24 23 50 50 H 1.08997 * 110.96930 * 267.33428 * 25 24 23 51 51 H 1.09003 * 110.46933 * 216.51180 * 26 25 24 52 52 H 1.09006 * 110.59990 * 93.94051 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9834 -0.8377 5 6 3.5410 1.4445 -0.1335 6 8 4.2378 1.5175 0.8565 7 7 4.1092 1.3654 -1.3532 8 6 3.4158 1.3663 -2.6620 9 6 4.2109 0.3308 -3.4901 10 6 5.6682 0.5661 -3.0301 11 6 6.3972 1.4779 -4.0191 12 6 6.4045 -0.7682 -2.8936 13 7 6.5082 -1.4054 -4.2086 14 6 7.1327 -2.6175 -4.3347 15 1 7.5484 -3.1040 -3.4646 16 6 7.2305 -3.2216 -5.5807 17 7 7.8312 -4.3864 -5.7019 18 14 6.5109 -2.3807 -7.0855 19 1 7.5401 -1.5070 -7.7040 20 1 6.0786 -3.4077 -8.0670 21 1 5.3417 -1.5589 -6.6815 22 6 5.5480 1.2536 -1.6573 23 7 1.6606 2.0946 1.2558 24 6 0.8162 3.2917 1.3450 25 6 0.3360 3.3514 2.8121 26 6 1.4603 2.5751 3.5412 27 6 2.0413 1.6736 2.4742 28 8 2.7476 0.7110 2.6873 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.3785 1.0516 -2.5480 35 1 3.4713 2.3510 -3.1260 36 1 4.1069 0.5257 -4.5574 37 1 3.8897 -0.6830 -3.2511 38 1 7.3962 1.6973 -3.6426 39 1 6.4743 0.9782 -4.9848 40 1 5.8400 2.4076 -4.1346 41 1 7.4037 -0.5926 -2.4950 42 1 5.8526 -1.4201 -2.2164 43 1 6.1352 -0.9685 -4.9901 44 1 7.8992 -4.8087 -6.5725 45 1 5.9969 2.2461 -1.6985 46 1 6.0433 0.6537 -0.8937 47 1 1.3967 4.1817 1.1017 48 1 -0.0367 3.2028 0.6723 49 1 0.2810 4.3819 3.1630 50 1 -0.6244 2.8493 2.9289 51 1 1.0469 1.9827 4.3575 52 1 2.2197 3.2615 3.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724272488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:11 Heat of formation + Delta-G solvation = -48.154454 kcal Electronic energy + Delta-G solvation = -31028.140494 eV Core-core repulsion = 27028.120242 eV Total energy + Delta-G solvation = -4000.020252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08156 -39.86354 -38.00604 -36.47779 -35.13644 -34.88322 -32.68111 -31.33177 -30.71279 -29.57705 -28.07025 -27.77591 -26.46175 -25.36492 -23.24931 -22.50791 -22.23562 -22.01904 -20.32553 -19.12851 -18.54597 -17.76708 -17.37240 -16.91089 -16.35497 -16.00946 -15.50774 -15.28824 -14.57844 -14.50589 -14.30873 -14.07121 -13.92097 -13.75543 -13.56208 -13.40127 -13.35385 -13.25227 -12.87682 -12.70049 -12.57784 -12.49025 -12.29329 -12.07124 -11.92748 -11.84436 -11.53414 -11.50426 -11.39626 -11.36121 -11.21449 -10.89991 -10.67895 -10.45856 -10.34915 -10.04734 -9.97259 -9.66681 -9.56805 -8.89884 -8.82206 -8.67904 -7.22258 -5.75947 -3.11222 2.37064 2.59333 2.65644 3.13119 3.33805 3.36506 3.43252 4.05135 4.10671 4.28270 4.42973 4.56765 4.58091 4.59285 4.63373 4.70485 4.76773 4.94363 4.97503 5.06294 5.13448 5.18273 5.21061 5.28287 5.31395 5.34947 5.40076 5.47645 5.54432 5.58596 5.58963 5.67862 5.69725 5.78176 5.81536 5.84898 5.88327 5.99865 6.06929 6.16726 6.25027 6.33293 6.36040 6.46462 6.67892 6.75486 6.96630 7.51105 8.01101 8.08141 8.23703 8.43011 9.22167 9.93939 10.14274 11.42727 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002631 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.428871 B =10639.532609 C =10719.844023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.152 3.848 4 H 0.105 0.895 5 C 0.517 3.483 6 O -0.511 6.511 7 N -0.619 5.619 8 C 0.097 3.903 9 C -0.123 4.123 10 C -0.084 4.084 11 C -0.133 4.133 12 C 0.172 3.828 13 N -0.752 5.752 14 C -0.241 4.241 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.883 3.117 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.120 3.880 23 N -0.613 5.613 24 C 0.104 3.896 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.520 3.480 28 O -0.499 6.499 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.099 0.901 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.489 20.963 11.987 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.122 0.878 5 C 0.303 3.697 6 O -0.385 6.385 7 N -0.355 5.355 8 C -0.026 4.026 9 C -0.161 4.161 10 C -0.085 4.085 11 C -0.190 4.190 12 C 0.044 3.956 13 N -0.398 5.398 14 C -0.371 4.371 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.002 4.002 23 N -0.350 5.350 24 C -0.019 4.019 25 C -0.167 4.167 26 C -0.196 4.196 27 C 0.307 3.693 28 O -0.371 6.371 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.101 0.899 51 H 0.118 0.882 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.616 20.241 12.780 30.949 hybrid contribution -0.396 0.553 -1.417 1.572 sum -20.012 20.794 11.363 31.016 Atomic orbital electron populations 1.21696 0.94517 1.02228 1.01622 1.21851 0.96901 0.93873 1.04785 1.20781 0.91788 0.95982 0.86927 0.87751 1.20496 0.90362 0.77062 0.81812 1.90783 1.63875 1.47871 1.35940 1.48812 1.08489 1.73115 1.05103 1.22586 0.96889 0.99861 0.83294 1.22754 0.93978 0.99616 0.99747 1.21712 0.95768 0.97071 0.93932 1.21818 0.99966 0.97908 0.99355 1.20675 0.96770 0.89366 0.88742 1.42691 1.70346 1.22871 1.03907 1.19071 1.28395 0.94240 0.95436 0.89267 1.24671 1.00703 0.96747 0.97121 1.69704 1.48312 1.16748 1.23503 0.86566 0.79047 0.78863 0.84162 1.21095 1.21771 1.20350 1.22084 0.81144 1.00331 0.96686 1.48011 1.52177 1.29423 1.05356 1.22079 0.94222 0.87554 0.98034 1.22603 0.98520 1.01845 0.93758 1.22367 0.99389 0.99586 0.98220 1.20731 0.79646 0.84942 0.83932 1.90760 1.35274 1.27689 1.83372 0.92685 0.92668 0.92055 0.90059 0.89502 0.90447 0.90927 0.90028 0.89869 0.92177 0.91707 0.93167 0.95268 0.95367 0.80576 0.93089 0.91596 0.90284 0.91309 0.90348 0.89199 0.89934 0.88227 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.80 37.16 0.36 -0.75 16 2 C -0.14 -1.45 5.30 -26.73 -0.14 -1.60 16 3 C 0.15 1.61 1.96 -69.09 -0.14 1.48 16 4 H 0.10 0.79 7.05 -51.93 -0.37 0.42 16 5 C 0.52 7.51 7.05 -10.99 -0.08 7.43 16 6 O -0.51 -9.73 14.37 -16.46 -0.24 -9.96 16 7 N -0.62 -8.11 3.29 -169.98 -0.56 -8.67 16 8 C 0.10 0.97 6.75 -2.31 -0.02 0.95 16 9 C -0.12 -1.59 5.72 -25.04 -0.14 -1.73 16 10 C -0.08 -1.23 0.67 -153.13 -0.10 -1.33 16 11 C -0.13 -1.80 8.05 37.16 0.30 -1.50 16 12 C 0.17 3.33 4.85 -4.04 -0.02 3.31 16 13 N -0.75 -17.46 4.92 -59.90 -0.29 -17.76 16 14 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 17 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 18 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 22 C 0.12 1.71 6.27 -2.98 -0.02 1.69 16 23 N -0.61 -6.16 2.25 -166.17 -0.37 -6.53 16 24 C 0.10 0.59 7.30 -3.12 -0.02 0.56 16 25 C -0.13 -0.56 7.20 -24.97 -0.18 -0.74 16 26 C -0.16 -1.18 6.87 -26.62 -0.18 -1.37 16 27 C 0.52 6.57 6.79 -10.86 -0.07 6.50 16 28 O -0.50 -8.87 14.55 -16.46 -0.24 -9.11 16 29 H 0.05 0.42 7.76 -51.93 -0.40 0.02 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 33 H 0.09 1.23 6.64 -51.93 -0.34 0.88 16 34 H 0.08 0.61 6.66 -51.93 -0.35 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.00 7.85 -51.93 -0.41 0.60 16 37 H 0.08 1.23 7.84 -51.93 -0.41 0.82 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.98 6.75 -51.93 -0.35 0.63 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 43 H 0.36 8.01 4.04 -40.82 -0.16 7.85 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 45 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 46 H 0.08 1.29 7.65 -51.92 -0.40 0.89 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -37.68 402.36 -9.37 -47.05 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -9.08 Total: 4.73 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.70 Total: 5.90 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.45 Total: -61.72 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.48 Total: -19.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.68 -9.37 -47.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.104 kcal (2) G-P(sol) polarization free energy of solvation -37.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds