Wall clock time and date at job start Tue Mar 31 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 H 1.08997 * 109.46678 * 305.39665 * 3 2 1 5 5 C 1.50690 * 109.46945 * 185.39371 * 3 2 1 6 6 O 1.21284 * 120.00080 * 264.26753 * 5 3 2 7 7 N 1.34782 * 120.00341 * 84.27310 * 5 3 2 8 8 C 1.48120 * 127.02716 * 4.61927 * 7 5 3 9 9 C 1.54602 * 103.42178 * 219.28950 * 8 7 5 10 10 C 1.54621 * 102.91040 * 322.87167 * 9 8 7 11 11 C 1.52998 * 110.32956 * 262.80347 * 10 9 8 12 12 C 1.53004 * 110.32251 * 140.59176 * 10 9 8 13 13 N 1.46494 * 109.47505 * 64.37745 * 12 10 9 14 14 C 1.36932 * 120.00075 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99612 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47194 * 89.99838 * 18 16 14 20 20 H 1.48494 * 109.46897 * 209.99982 * 18 16 14 21 21 H 1.48507 * 109.46971 * 329.99578 * 18 16 14 22 22 C 1.47485 * 127.03778 * 184.94386 * 7 5 3 23 23 N 1.46498 * 109.47217 * 65.39396 * 3 2 1 24 24 C 1.46767 * 124.34785 * 240.00398 * 23 3 2 25 25 C 1.54484 * 105.54858 * 162.96066 * 24 23 3 26 26 C 1.54856 * 101.65952 * 25.42925 * 25 24 23 27 27 C 1.34418 * 124.35106 * 60.01900 * 23 3 2 28 28 O 1.21280 * 124.94139 * 0.37059 * 27 23 3 29 29 H 1.08999 * 109.47051 * 300.00245 * 1 2 3 30 30 H 1.09003 * 109.47301 * 59.99881 * 1 2 3 31 31 H 1.09005 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47051 * 239.99755 * 2 1 3 33 33 H 1.09005 * 109.46906 * 119.99780 * 2 1 3 34 34 H 1.08994 * 110.66402 * 337.77191 * 8 7 5 35 35 H 1.08998 * 110.65790 * 100.89201 * 8 7 5 36 36 H 1.08999 * 110.83122 * 204.45283 * 9 8 7 37 37 H 1.08995 * 110.72895 * 81.24348 * 9 8 7 38 38 H 1.08997 * 109.47198 * 175.62429 * 11 10 9 39 39 H 1.09001 * 109.46943 * 295.63042 * 11 10 9 40 40 H 1.09005 * 109.46702 * 55.62604 * 11 10 9 41 41 H 1.09010 * 109.46665 * 184.38341 * 12 10 9 42 42 H 1.09007 * 109.47113 * 304.37195 * 12 10 9 43 43 H 0.96997 * 119.99994 * 0.02562 * 13 12 10 44 44 H 0.97002 * 119.99496 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.91009 * 273.87539 * 22 7 5 46 46 H 1.09008 * 109.90813 * 34.95843 * 22 7 5 47 47 H 1.08998 * 110.24283 * 281.99775 * 24 23 3 48 48 H 1.08994 * 110.24847 * 43.91418 * 24 23 3 49 49 H 1.09001 * 110.96754 * 143.57346 * 25 24 23 50 50 H 1.08997 * 110.96930 * 267.33428 * 25 24 23 51 51 H 1.09003 * 110.46933 * 216.51180 * 26 25 24 52 52 H 1.09006 * 110.59990 * 93.94051 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9834 -0.8377 5 6 3.5410 1.4445 -0.1335 6 8 4.2378 1.5175 0.8565 7 7 4.1092 1.3654 -1.3532 8 6 3.4158 1.3663 -2.6620 9 6 4.2109 0.3308 -3.4901 10 6 5.6682 0.5661 -3.0301 11 6 6.3972 1.4779 -4.0191 12 6 6.4045 -0.7682 -2.8936 13 7 6.5082 -1.4054 -4.2086 14 6 7.1327 -2.6175 -4.3347 15 1 7.5484 -3.1040 -3.4646 16 6 7.2305 -3.2216 -5.5807 17 7 7.8312 -4.3864 -5.7019 18 14 6.5109 -2.3807 -7.0855 19 1 7.5401 -1.5070 -7.7040 20 1 6.0786 -3.4077 -8.0670 21 1 5.3417 -1.5589 -6.6815 22 6 5.5480 1.2536 -1.6573 23 7 1.6606 2.0946 1.2558 24 6 0.8162 3.2917 1.3450 25 6 0.3360 3.3514 2.8121 26 6 1.4603 2.5751 3.5412 27 6 2.0413 1.6736 2.4742 28 8 2.7476 0.7110 2.6873 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.3785 1.0516 -2.5480 35 1 3.4713 2.3510 -3.1260 36 1 4.1069 0.5257 -4.5574 37 1 3.8897 -0.6830 -3.2511 38 1 7.3962 1.6973 -3.6426 39 1 6.4743 0.9782 -4.9848 40 1 5.8400 2.4076 -4.1346 41 1 7.4037 -0.5926 -2.4950 42 1 5.8526 -1.4201 -2.2164 43 1 6.1352 -0.9685 -4.9901 44 1 7.8992 -4.8087 -6.5725 45 1 5.9969 2.2461 -1.6985 46 1 6.0433 0.6537 -0.8937 47 1 1.3967 4.1817 1.1017 48 1 -0.0367 3.2028 0.6723 49 1 0.2810 4.3819 3.1630 50 1 -0.6244 2.8493 2.9289 51 1 1.0469 1.9827 4.3575 52 1 2.2197 3.2615 3.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724272488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:10 Heat of formation + Delta-G solvation = -73.670237 kcal Electronic energy + Delta-G solvation = -31029.246941 eV Core-core repulsion = 27028.120242 eV Total energy + Delta-G solvation = -4001.126699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.97244 -40.87335 -39.19945 -37.39323 -36.64727 -35.84077 -34.35189 -32.61387 -31.97209 -30.61990 -28.94641 -28.39843 -27.90320 -26.66955 -24.41221 -23.87981 -23.24607 -22.69190 -21.28972 -20.50994 -19.70625 -19.36320 -18.40154 -17.77040 -17.15587 -17.10513 -16.53993 -16.30947 -16.25873 -15.79935 -15.32285 -15.21784 -15.12825 -15.05824 -14.62746 -14.48593 -14.28006 -14.23393 -13.81844 -13.79496 -13.58111 -13.43135 -13.33253 -13.22743 -13.10382 -12.91974 -12.78460 -12.60829 -12.41462 -12.17565 -12.16091 -12.04797 -11.97527 -11.79980 -11.74044 -11.57193 -11.44644 -11.02780 -10.99719 -10.59391 -9.75965 -9.65023 -9.33319 -8.04123 -5.39027 1.35819 1.42863 1.44578 1.50056 1.56809 1.83888 2.24477 2.48241 3.22879 3.27220 3.42833 3.56896 3.59302 3.67918 3.72691 3.85034 3.88509 3.97315 4.08794 4.19493 4.21691 4.26894 4.33230 4.37973 4.42468 4.58948 4.65061 4.69990 4.70901 4.73055 4.74579 4.84934 4.87565 4.88498 4.95448 5.01371 5.04689 5.11381 5.12257 5.17021 5.21298 5.25520 5.30067 5.31469 5.48100 5.60082 5.72171 6.18800 6.20899 6.49037 7.05837 7.06322 7.32980 7.78764 8.03890 9.17900 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002631 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.428871 B =10639.532609 C =10719.844023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 C 0.156 3.844 4 H 0.151 0.849 5 C 0.506 3.494 6 O -0.568 6.568 7 N -0.620 5.620 8 C 0.102 3.898 9 C -0.124 4.124 10 C -0.074 4.074 11 C -0.129 4.129 12 C 0.171 3.829 13 N -0.745 5.745 14 C -0.241 4.241 15 H 0.044 0.956 16 C -0.067 4.067 17 N -0.987 5.987 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.239 1.239 22 C 0.123 3.877 23 N -0.612 5.612 24 C 0.096 3.904 25 C -0.114 4.114 26 C -0.154 4.154 27 C 0.500 3.500 28 O -0.569 6.569 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.014 0.986 42 H 0.004 0.996 43 H 0.372 0.628 44 H 0.259 0.741 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.723 25.480 9.641 36.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.171 4.171 3 C 0.049 3.951 4 H 0.168 0.832 5 C 0.294 3.706 6 O -0.446 6.446 7 N -0.354 5.354 8 C -0.019 4.019 9 C -0.163 4.163 10 C -0.075 4.075 11 C -0.187 4.187 12 C 0.044 3.956 13 N -0.392 5.392 14 C -0.372 4.372 15 H 0.062 0.938 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.163 1.163 22 C 0.000 4.000 23 N -0.346 5.346 24 C -0.025 4.025 25 C -0.152 4.152 26 C -0.194 4.194 27 C 0.290 3.710 28 O -0.446 6.446 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.207 0.793 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.135 0.865 50 H 0.116 0.884 51 H 0.122 0.878 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.918 24.841 10.418 36.023 hybrid contribution 1.035 -0.944 -0.574 1.514 sum -22.883 23.897 9.844 34.519 Atomic orbital electron populations 1.21651 0.91658 1.02609 1.03216 1.21792 0.99221 0.93706 1.02388 1.20887 0.88873 0.96518 0.88835 0.83186 1.21389 0.92087 0.75855 0.81275 1.90762 1.65466 1.50477 1.37907 1.48937 1.08132 1.72144 1.06177 1.22840 0.97522 1.00728 0.80774 1.22767 0.92592 0.99469 1.01425 1.21567 0.96845 0.94254 0.94872 1.21807 1.00184 0.98927 0.97748 1.20725 0.96466 0.91793 0.86576 1.42522 1.69683 1.21335 1.05614 1.18984 1.28152 0.95862 0.94179 0.93833 1.25635 1.01554 0.97558 1.01033 1.69920 1.50338 1.19012 1.24446 0.85336 0.79499 0.77956 0.78603 1.20057 1.22252 1.16290 1.21944 0.82395 1.00430 0.95258 1.48230 1.51762 1.30228 1.04389 1.22474 0.94643 0.85755 0.99629 1.22661 0.97452 1.02906 0.92162 1.22411 1.00602 0.99110 0.97268 1.21694 0.78815 0.84553 0.85963 1.90715 1.38429 1.30834 1.84664 0.92415 0.89535 0.92429 0.90361 0.94166 0.87448 0.87299 0.88068 0.92345 0.92712 0.92879 0.89280 0.96801 0.97749 0.79337 0.93250 0.89812 0.93992 0.90425 0.87073 0.86502 0.88395 0.87821 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.80 71.98 0.71 -1.03 16 2 C -0.13 -2.76 5.30 30.59 0.16 -2.60 16 3 C 0.16 2.99 1.96 44.24 0.09 3.07 16 4 H 0.15 1.45 7.05 -2.39 -0.02 1.43 16 5 C 0.51 14.63 7.05 87.65 0.62 15.25 16 6 O -0.57 -22.91 14.37 18.01 0.26 -22.65 16 7 N -0.62 -15.32 3.29 -810.07 -2.67 -17.98 16 8 C 0.10 1.60 6.75 86.61 0.58 2.18 16 9 C -0.12 -2.85 5.72 31.69 0.18 -2.67 16 10 C -0.07 -2.09 0.67 -51.29 -0.03 -2.13 16 11 C -0.13 -3.11 8.05 71.98 0.58 -2.53 16 12 C 0.17 6.93 4.85 86.38 0.42 7.35 16 13 N -0.74 -34.90 4.92 -343.44 -1.69 -36.59 16 14 C -0.24 -14.21 10.47 84.04 0.88 -13.33 16 15 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 16 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 17 N -0.99 -64.57 13.97 21.65 0.30 -64.27 16 18 Si 0.96 44.36 27.74 68.60 1.90 46.26 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.24 -9.44 6.52 99.48 0.65 -8.79 16 22 C 0.12 3.49 6.27 86.53 0.54 4.03 16 23 N -0.61 -11.24 2.25 -798.23 -1.80 -13.03 16 24 C 0.10 0.68 7.30 86.83 0.63 1.31 16 25 C -0.11 -0.55 7.20 31.73 0.23 -0.32 16 26 C -0.15 -2.21 6.87 30.67 0.21 -1.99 16 27 C 0.50 12.97 6.79 87.90 0.60 13.57 16 28 O -0.57 -22.11 14.55 18.02 0.26 -21.84 16 29 H 0.06 0.72 7.76 -2.39 -0.02 0.70 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 1.62 7.88 -2.39 -0.02 1.60 16 33 H 0.04 1.23 6.64 -2.38 -0.02 1.21 16 34 H 0.11 1.09 6.66 -2.39 -0.02 1.07 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.98 7.85 -2.39 -0.02 1.96 16 37 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.42 6.75 -2.39 -0.02 1.41 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.00 0.20 8.11 -2.38 -0.02 0.18 16 43 H 0.37 15.78 4.04 -92.71 -0.37 15.41 16 44 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 45 H 0.08 2.08 7.68 -2.39 -0.02 2.06 16 46 H 0.04 1.48 7.65 -2.38 -0.02 1.46 16 47 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -93.34 402.36 3.90 -89.44 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.46 Total: 24.02 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.86 Total: 16.65 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.85 Total: -131.87 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: 0.52 Total: -44.50 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Total: -93.34 3.90 -89.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.768 kcal (2) G-P(sol) polarization free energy of solvation -93.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds