Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 O 1.21283 * 120.00262 * 120.00231 * 5 3 2 7 7 N 1.34777 * 119.99928 * 299.72137 * 5 3 2 8 8 C 1.48122 * 127.03502 * 359.96635 * 7 5 3 9 9 C 1.54598 * 103.42047 * 219.28489 * 8 7 5 10 10 C 1.54618 * 102.91140 * 322.86213 * 9 8 7 11 11 C 1.52995 * 110.32792 * 262.80862 * 10 9 8 12 12 C 1.53003 * 110.32538 * 140.59409 * 10 9 8 13 13 N 1.46501 * 109.47092 * 64.38011 * 12 10 9 14 14 C 1.36939 * 119.99950 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99941 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47364 * 90.00555 * 18 16 14 20 20 H 1.48500 * 109.47222 * 210.00340 * 18 16 14 21 21 H 1.48495 * 109.47162 * 330.00224 * 18 16 14 22 22 C 1.47487 * 127.03512 * 180.27513 * 7 5 3 23 23 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 24 24 C 1.46766 * 124.35022 * 119.72592 * 23 3 2 25 25 C 1.54657 * 105.38541 * 162.85403 * 24 23 3 26 26 C 1.54629 * 101.68319 * 25.77070 * 25 24 23 27 27 C 1.34422 * 124.35233 * 300.02696 * 23 3 2 28 28 O 1.21282 * 124.94249 * 0.38614 * 27 23 3 29 29 H 1.08997 * 109.47176 * 300.00690 * 1 2 3 30 30 H 1.09011 * 109.46880 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47624 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 34 34 H 1.09004 * 110.65797 * 337.76678 * 8 7 5 35 35 H 1.09002 * 110.66353 * 100.88140 * 8 7 5 36 36 H 1.09002 * 110.82664 * 204.44630 * 9 8 7 37 37 H 1.08992 * 110.73158 * 81.24390 * 9 8 7 38 38 H 1.09002 * 109.46817 * 175.62069 * 11 10 9 39 39 H 1.08997 * 109.47508 * 295.62200 * 11 10 9 40 40 H 1.09002 * 109.47289 * 55.62297 * 11 10 9 41 41 H 1.08997 * 109.47058 * 184.38153 * 12 10 9 42 42 H 1.09007 * 109.47031 * 304.38044 * 12 10 9 43 43 H 0.96998 * 120.00012 * 359.97438 * 13 12 10 44 44 H 0.97001 * 119.99863 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.91358 * 273.88464 * 22 7 5 46 46 H 1.08998 * 109.90865 * 34.96510 * 22 7 5 47 47 H 1.09000 * 110.24613 * 281.98767 * 24 23 3 48 48 H 1.09002 * 110.24161 * 43.98687 * 24 23 3 49 49 H 1.09003 * 111.19358 * 267.59793 * 25 24 23 50 50 H 1.08996 * 110.85453 * 143.79315 * 25 24 23 51 51 H 1.09000 * 110.48201 * 216.31340 * 26 25 24 52 52 H 1.08997 * 110.60259 * 93.72450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 8 4.2218 1.9434 -0.7477 7 7 4.1295 0.8959 1.2058 8 6 3.4553 0.2544 2.3582 9 6 4.2901 0.7267 3.5707 10 6 5.7337 0.7278 3.0169 11 6 6.4516 -0.5673 3.4016 12 6 6.5040 1.9404 3.5434 13 7 6.6439 1.8360 4.9980 14 6 7.3021 2.8143 5.6945 15 1 7.7177 3.6629 5.1715 16 6 7.4342 2.7156 7.0727 17 7 6.9273 1.6816 7.7101 18 14 8.3327 4.0497 8.0227 19 1 7.3659 5.0969 8.4397 20 1 8.9698 3.4569 9.2260 21 1 9.3765 4.6557 7.1577 22 6 5.5751 0.8176 1.4877 23 7 1.6526 2.0974 -1.2518 24 6 0.8030 3.2914 -1.3332 25 6 1.0297 3.8601 -2.7535 26 6 1.4531 2.5941 -3.5339 27 6 2.0247 1.6787 -2.4737 28 8 2.7181 0.7084 -2.6942 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.4253 0.6011 2.4429 35 1 3.4907 -0.8314 2.2689 36 1 4.1961 0.0277 4.4018 37 1 3.9931 1.7298 3.8764 38 1 7.4388 -0.5864 2.9399 39 1 6.5563 -0.6166 4.4854 40 1 5.8711 -1.4218 3.0536 41 1 7.4922 1.9703 3.0845 42 1 5.9603 2.8520 3.2952 43 1 6.2697 1.0744 5.4678 44 1 7.0200 1.6125 8.6732 45 1 5.9973 -0.0707 1.0178 46 1 6.0755 1.7098 1.1114 47 1 -0.2435 3.0198 -1.1953 48 1 1.1061 4.0217 -0.5830 49 1 1.8254 4.6050 -2.7573 50 1 0.1065 4.2763 -3.1567 51 1 2.2129 2.8397 -4.2758 52 1 0.5896 2.1317 -4.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724272489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = -52.262143 kcal Electronic energy + Delta-G solvation = -30916.473422 eV Core-core repulsion = 26916.275047 eV Total energy + Delta-G solvation = -4000.198375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07603 -39.79852 -37.90323 -36.48613 -35.27869 -34.67985 -32.64403 -31.26688 -30.30721 -29.41786 -28.02708 -27.73511 -26.19259 -25.18942 -23.38238 -22.47640 -22.31378 -22.12572 -20.29472 -18.98830 -18.52434 -17.34108 -17.17914 -16.93448 -16.53641 -15.83850 -15.59672 -14.82146 -14.79272 -14.52947 -14.20840 -14.06702 -13.85362 -13.67375 -13.59828 -13.30530 -13.26469 -12.98619 -12.97818 -12.76583 -12.56376 -12.34092 -12.14080 -12.01700 -11.85452 -11.72265 -11.50376 -11.39760 -11.29312 -11.19106 -10.99476 -10.82376 -10.59449 -10.31184 -10.24368 -9.95514 -9.89394 -9.73055 -9.65771 -8.88091 -8.85264 -8.60123 -6.91913 -5.77787 -3.05476 2.38597 2.63839 2.71278 3.13770 3.42926 3.48631 3.50076 4.07208 4.17047 4.33869 4.48901 4.57434 4.60444 4.63969 4.72877 4.79175 4.84565 4.99419 5.09223 5.11752 5.15394 5.20955 5.30610 5.37510 5.39155 5.43603 5.47503 5.51820 5.59471 5.63919 5.66903 5.75845 5.77624 5.90516 5.95001 5.98274 6.02164 6.08970 6.23229 6.26375 6.37752 6.43177 6.51564 6.67761 6.79509 6.87411 6.96288 7.58445 7.70264 8.07348 8.23977 8.41802 9.53338 10.10652 10.46270 11.45211 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.002530 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.537410 B =11063.614766 C =11450.966687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.149 3.851 4 H 0.112 0.888 5 C 0.522 3.478 6 O -0.524 6.524 7 N -0.616 5.616 8 C 0.095 3.905 9 C -0.119 4.119 10 C -0.079 4.079 11 C -0.132 4.132 12 C 0.168 3.832 13 N -0.728 5.728 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.119 3.881 23 N -0.606 5.606 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.526 3.474 28 O -0.517 6.517 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.317 -1.713 -18.309 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.042 3.958 4 H 0.130 0.870 5 C 0.308 3.692 6 O -0.400 6.400 7 N -0.351 5.351 8 C -0.027 4.027 9 C -0.157 4.157 10 C -0.080 4.080 11 C -0.190 4.190 12 C 0.040 3.960 13 N -0.373 5.373 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.004 4.004 23 N -0.341 5.341 24 C -0.019 4.019 25 C -0.168 4.168 26 C -0.194 4.194 27 C 0.314 3.686 28 O -0.392 6.392 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.119 0.881 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.497 -1.799 -18.910 25.825 hybrid contribution 0.425 0.599 0.940 1.193 sum -17.071 -1.200 -17.969 24.815 Atomic orbital electron populations 1.21706 0.94594 1.02078 1.01819 1.22029 0.97057 0.94266 1.04743 1.20773 0.91962 0.95733 0.87322 0.87015 1.20375 0.90102 0.77984 0.80692 1.90714 1.65001 1.45090 1.39154 1.48736 1.08360 1.57949 1.20046 1.22679 0.96967 0.97569 0.85518 1.22721 0.93607 1.03078 0.96274 1.21650 0.95876 0.97875 0.92625 1.21810 0.99497 0.94602 1.03085 1.20689 0.95875 0.92921 0.86512 1.42355 1.67692 1.26904 1.00370 1.19231 1.27413 1.00511 0.89659 0.91308 1.24707 1.01625 0.98163 0.96479 1.69652 1.50695 1.30029 1.07970 0.86198 0.79310 0.81128 0.79623 1.21796 1.21792 1.20806 1.22128 0.80722 1.02254 0.95265 1.47917 1.51143 1.29836 1.05225 1.22150 0.94454 0.86680 0.98604 1.22606 1.03097 0.97184 0.93911 1.22307 1.03012 0.96042 0.98075 1.20735 0.78980 0.84894 0.83975 1.90708 1.36749 1.28201 1.83526 0.92483 0.92733 0.92193 0.89772 0.89699 0.90423 0.90803 0.89612 0.90147 0.92664 0.90814 0.93425 0.96189 0.96337 0.78067 0.93563 0.91614 0.90543 0.90860 0.90349 0.89794 0.89203 0.88125 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.80 37.16 0.36 -0.68 16 2 C -0.14 -1.39 5.11 -26.73 -0.14 -1.53 16 3 C 0.15 1.64 1.98 -69.09 -0.14 1.51 16 4 H 0.11 0.97 7.82 -51.93 -0.41 0.57 16 5 C 0.52 7.92 6.95 -10.98 -0.08 7.85 16 6 O -0.52 -10.13 15.23 -9.07 -0.14 -10.27 16 7 N -0.62 -8.64 3.29 -169.97 -0.56 -9.20 16 8 C 0.10 1.06 5.20 -2.31 -0.01 1.05 16 9 C -0.12 -1.66 5.72 -25.04 -0.14 -1.80 16 10 C -0.08 -1.24 0.67 -153.14 -0.10 -1.35 16 11 C -0.13 -2.00 8.05 37.15 0.30 -1.71 16 12 C 0.17 3.37 4.85 -4.04 -0.02 3.35 16 13 N -0.73 -17.84 5.12 -59.91 -0.31 -18.14 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C 0.12 1.82 6.28 -2.98 -0.02 1.80 16 23 N -0.61 -6.45 2.08 -166.05 -0.34 -6.80 16 24 C 0.10 0.69 7.31 -3.03 -0.02 0.67 16 25 C -0.13 -0.74 7.19 -25.00 -0.18 -0.92 16 26 C -0.15 -1.24 6.86 -26.74 -0.18 -1.42 16 27 C 0.53 6.73 6.68 -10.86 -0.07 6.66 16 28 O -0.52 -8.95 15.35 -9.07 -0.14 -9.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 7.75 -51.92 -0.40 0.00 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.07 6.62 -51.93 -0.34 0.72 16 33 H 0.08 0.75 5.26 -51.93 -0.27 0.47 16 34 H 0.08 0.68 6.60 -51.93 -0.34 0.34 16 35 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.09 1.18 7.85 -51.93 -0.41 0.77 16 37 H 0.08 1.26 7.84 -51.93 -0.41 0.86 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.28 6.75 -51.93 -0.35 0.93 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.38 9.69 6.18 -40.82 -0.25 9.43 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 46 H 0.08 1.29 7.60 -51.93 -0.39 0.90 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 52 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -36.07 402.82 -9.41 -45.48 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -9.01 Total: 5.32 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.69 Total: 6.27 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.49 Total: -61.09 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.28 Total: -19.36 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.07 -9.41 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.779 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds