Wall clock time and date at job start Tue Mar 31 2020 20:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 O 1.21283 * 120.00262 * 120.00231 * 5 3 2 7 7 N 1.34777 * 119.99928 * 299.72137 * 5 3 2 8 8 C 1.48122 * 127.03502 * 359.96635 * 7 5 3 9 9 C 1.54598 * 103.42047 * 219.28489 * 8 7 5 10 10 C 1.54618 * 102.91140 * 322.86213 * 9 8 7 11 11 C 1.52995 * 110.32792 * 262.80862 * 10 9 8 12 12 C 1.53003 * 110.32538 * 140.59409 * 10 9 8 13 13 N 1.46501 * 109.47092 * 64.38011 * 12 10 9 14 14 C 1.36939 * 119.99950 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99941 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99949 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47364 * 90.00555 * 18 16 14 20 20 H 1.48500 * 109.47222 * 210.00340 * 18 16 14 21 21 H 1.48495 * 109.47162 * 330.00224 * 18 16 14 22 22 C 1.47487 * 127.03512 * 180.27513 * 7 5 3 23 23 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 24 24 C 1.46766 * 124.35022 * 119.72592 * 23 3 2 25 25 C 1.54657 * 105.38541 * 162.85403 * 24 23 3 26 26 C 1.54629 * 101.68319 * 25.77070 * 25 24 23 27 27 C 1.34422 * 124.35233 * 300.02696 * 23 3 2 28 28 O 1.21282 * 124.94249 * 0.38614 * 27 23 3 29 29 H 1.08997 * 109.47176 * 300.00690 * 1 2 3 30 30 H 1.09011 * 109.46880 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47624 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 34 34 H 1.09004 * 110.65797 * 337.76678 * 8 7 5 35 35 H 1.09002 * 110.66353 * 100.88140 * 8 7 5 36 36 H 1.09002 * 110.82664 * 204.44630 * 9 8 7 37 37 H 1.08992 * 110.73158 * 81.24390 * 9 8 7 38 38 H 1.09002 * 109.46817 * 175.62069 * 11 10 9 39 39 H 1.08997 * 109.47508 * 295.62200 * 11 10 9 40 40 H 1.09002 * 109.47289 * 55.62297 * 11 10 9 41 41 H 1.08997 * 109.47058 * 184.38153 * 12 10 9 42 42 H 1.09007 * 109.47031 * 304.38044 * 12 10 9 43 43 H 0.96998 * 120.00012 * 359.97438 * 13 12 10 44 44 H 0.97001 * 119.99863 * 179.97438 * 17 16 14 45 45 H 1.09001 * 109.91358 * 273.88464 * 22 7 5 46 46 H 1.08998 * 109.90865 * 34.96510 * 22 7 5 47 47 H 1.09000 * 110.24613 * 281.98767 * 24 23 3 48 48 H 1.09002 * 110.24161 * 43.98687 * 24 23 3 49 49 H 1.09003 * 111.19358 * 267.59793 * 25 24 23 50 50 H 1.08996 * 110.85453 * 143.79315 * 25 24 23 51 51 H 1.09000 * 110.48201 * 216.31340 * 26 25 24 52 52 H 1.08997 * 110.60259 * 93.72450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 8 4.2218 1.9434 -0.7477 7 7 4.1295 0.8959 1.2058 8 6 3.4553 0.2544 2.3582 9 6 4.2901 0.7267 3.5707 10 6 5.7337 0.7278 3.0169 11 6 6.4516 -0.5673 3.4016 12 6 6.5040 1.9404 3.5434 13 7 6.6439 1.8360 4.9980 14 6 7.3021 2.8143 5.6945 15 1 7.7177 3.6629 5.1715 16 6 7.4342 2.7156 7.0727 17 7 6.9273 1.6816 7.7101 18 14 8.3327 4.0497 8.0227 19 1 7.3659 5.0969 8.4397 20 1 8.9698 3.4569 9.2260 21 1 9.3765 4.6557 7.1577 22 6 5.5751 0.8176 1.4877 23 7 1.6526 2.0974 -1.2518 24 6 0.8030 3.2914 -1.3332 25 6 1.0297 3.8601 -2.7535 26 6 1.4531 2.5941 -3.5339 27 6 2.0247 1.6787 -2.4737 28 8 2.7181 0.7084 -2.6942 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.4253 0.6011 2.4429 35 1 3.4907 -0.8314 2.2689 36 1 4.1961 0.0277 4.4018 37 1 3.9931 1.7298 3.8764 38 1 7.4388 -0.5864 2.9399 39 1 6.5563 -0.6166 4.4854 40 1 5.8711 -1.4218 3.0536 41 1 7.4922 1.9703 3.0845 42 1 5.9603 2.8520 3.2952 43 1 6.2697 1.0744 5.4678 44 1 7.0200 1.6125 8.6732 45 1 5.9973 -0.0707 1.0178 46 1 6.0755 1.7098 1.1114 47 1 -0.2435 3.0198 -1.1953 48 1 1.1061 4.0217 -0.5830 49 1 1.8254 4.6050 -2.7573 50 1 0.1065 4.2763 -3.1567 51 1 2.2129 2.8397 -4.2758 52 1 0.5896 2.1317 -4.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724272489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:13 Heat of formation + Delta-G solvation = -75.355483 kcal Electronic energy + Delta-G solvation = -30917.474824 eV Core-core repulsion = 26916.275047 eV Total energy + Delta-G solvation = -4001.199777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01045 -40.87696 -39.16413 -37.41351 -36.57217 -35.89515 -34.27343 -32.15572 -31.90310 -30.59828 -28.95088 -28.41566 -27.67096 -26.64878 -24.66113 -24.09217 -23.09626 -22.72643 -21.30776 -20.26095 -19.61900 -19.15956 -18.25013 -17.83303 -17.40467 -17.04731 -16.65931 -16.44321 -15.81009 -15.62817 -15.54713 -15.29806 -15.06826 -14.96211 -14.58995 -14.45288 -14.28018 -14.10292 -14.01914 -13.73108 -13.49744 -13.32540 -13.29025 -13.07121 -12.98726 -12.86802 -12.81451 -12.60040 -12.41013 -12.17355 -12.16007 -12.12538 -11.92459 -11.84301 -11.64553 -11.51861 -11.37316 -11.02714 -10.94501 -10.66611 -9.80149 -9.68068 -8.99131 -7.95570 -5.23118 1.45832 1.47144 1.47707 1.52318 1.56370 1.87616 2.17049 2.55208 3.23471 3.37468 3.46460 3.61513 3.62745 3.66467 3.77411 3.82324 3.92615 4.08058 4.15363 4.20383 4.26140 4.30544 4.35772 4.39896 4.46822 4.57252 4.65361 4.66233 4.69158 4.74049 4.81087 4.86526 4.87684 4.89593 4.98696 5.05153 5.07039 5.08047 5.14055 5.18556 5.23134 5.23708 5.35969 5.37130 5.48242 5.49282 5.56505 6.17400 6.27265 6.47619 7.02781 7.25638 7.34978 8.08522 8.36606 9.27462 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.002530 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.537410 B =11063.614766 C =11450.966687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.149 3.851 4 H 0.143 0.857 5 C 0.512 3.488 6 O -0.577 6.577 7 N -0.617 5.617 8 C 0.102 3.898 9 C -0.115 4.115 10 C -0.070 4.070 11 C -0.126 4.126 12 C 0.170 3.830 13 N -0.733 5.733 14 C -0.248 4.248 15 H 0.067 0.933 16 C -0.068 4.068 17 N -0.963 5.963 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.275 1.275 22 C 0.124 3.876 23 N -0.607 5.607 24 C 0.096 3.904 25 C -0.121 4.121 26 C -0.150 4.150 27 C 0.508 3.492 28 O -0.577 6.577 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.381 0.619 44 H 0.252 0.748 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.126 0.874 51 H 0.093 0.907 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 -1.313 -18.218 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.042 3.958 4 H 0.161 0.839 5 C 0.300 3.700 6 O -0.456 6.456 7 N -0.351 5.351 8 C -0.019 4.019 9 C -0.153 4.153 10 C -0.072 4.072 11 C -0.183 4.183 12 C 0.043 3.957 13 N -0.377 5.377 14 C -0.380 4.380 15 H 0.085 0.915 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.798 3.202 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.201 1.201 22 C 0.000 4.000 23 N -0.341 5.341 24 C -0.025 4.025 25 C -0.158 4.158 26 C -0.190 4.190 27 C 0.297 3.703 28 O -0.456 6.456 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.215 0.785 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.124 0.876 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.144 0.856 51 H 0.112 0.888 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.374 -1.369 -18.812 27.765 hybrid contribution 1.352 0.502 0.876 1.688 sum -19.022 -0.866 -17.936 26.159 Atomic orbital electron populations 1.21671 0.92204 1.02830 1.02777 1.21977 0.98957 0.92886 1.03555 1.20943 0.88828 0.97298 0.88732 0.83916 1.21303 0.91933 0.76801 0.79941 1.90684 1.66523 1.47377 1.40997 1.48848 1.07891 1.57690 1.20628 1.22862 0.97785 0.98706 0.82563 1.22656 0.92583 1.02377 0.97707 1.21495 0.96685 0.96113 0.92860 1.21738 0.99860 0.95275 1.01423 1.20733 0.95864 0.94770 0.84359 1.42438 1.67231 1.26116 1.01896 1.19552 1.27176 1.00971 0.90253 0.91546 1.25453 1.02908 1.00374 0.97351 1.69785 1.52025 1.31638 1.07932 0.85208 0.78251 0.78636 0.78056 1.21299 1.21928 1.20069 1.21945 0.82032 1.01419 0.94606 1.48153 1.50788 1.30589 1.04523 1.22511 0.95382 0.85338 0.99263 1.22656 1.04426 0.95695 0.93036 1.22361 1.03436 0.96302 0.96929 1.21624 0.78288 0.84664 0.85694 1.90661 1.39475 1.30875 1.84625 0.90277 0.92923 0.91622 0.93281 0.88566 0.87072 0.88463 0.89008 0.92027 0.93077 0.93128 0.90299 0.97237 0.97438 0.78542 0.93873 0.90890 0.93020 0.87611 0.89843 0.90785 0.85552 0.88844 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.80 71.98 0.71 -0.83 16 2 C -0.14 -2.37 5.11 30.59 0.16 -2.22 16 3 C 0.15 3.03 1.98 44.25 0.09 3.12 16 4 H 0.14 1.97 7.82 -2.39 -0.02 1.96 16 5 C 0.51 15.48 6.95 87.66 0.61 16.09 16 6 O -0.58 -23.21 15.23 10.94 0.17 -23.05 16 7 N -0.62 -16.84 3.29 -810.05 -2.66 -19.50 16 8 C 0.10 2.00 5.20 86.61 0.45 2.45 16 9 C -0.11 -3.07 5.72 31.69 0.18 -2.89 16 10 C -0.07 -2.21 0.67 -51.29 -0.03 -2.24 16 11 C -0.13 -3.73 8.05 71.98 0.58 -3.15 16 12 C 0.17 7.02 4.85 86.38 0.42 7.44 16 13 N -0.73 -36.58 5.12 -343.44 -1.76 -38.34 16 14 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 15 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.96 -57.46 13.06 21.65 0.28 -57.17 16 18 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.12 3.81 6.28 86.53 0.54 4.35 16 23 N -0.61 -12.09 2.08 -797.87 -1.66 -13.74 16 24 C 0.10 0.99 7.31 86.89 0.64 1.62 16 25 C -0.12 -1.05 7.19 31.71 0.23 -0.83 16 26 C -0.15 -2.23 6.86 30.59 0.21 -2.02 16 27 C 0.51 13.02 6.68 87.90 0.59 13.61 16 28 O -0.58 -21.01 15.35 10.95 0.17 -20.84 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.62 7.75 -2.38 -0.02 0.60 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 1.24 6.62 -2.39 -0.02 1.23 16 33 H 0.10 1.40 5.26 -2.39 -0.01 1.39 16 34 H 0.11 1.49 6.60 -2.38 -0.02 1.47 16 35 H 0.10 1.55 7.93 -2.39 -0.02 1.53 16 36 H 0.09 2.37 7.85 -2.39 -0.02 2.35 16 37 H 0.06 1.89 7.84 -2.39 -0.02 1.87 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.75 6.75 -2.39 -0.02 1.74 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.01 0.34 8.11 -2.38 -0.02 0.32 16 43 H 0.38 19.50 6.18 -92.71 -0.57 18.93 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 46 H 0.05 1.84 7.60 -2.39 -0.02 1.82 16 47 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.13 0.22 8.14 -2.39 -0.02 0.21 16 51 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -83.15 402.82 3.56 -79.59 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.33 Total: 26.94 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.66 Total: 18.04 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.79 Total: -128.76 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: 0.33 Total: -43.89 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -83.15 3.56 -79.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724272489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.236 kcal (2) G-P(sol) polarization free energy of solvation -83.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds