Wall clock time and date at job start Tue Mar 31 2020 20:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47508 * 2 1 4 4 H 1.09001 * 109.47464 * 305.30665 * 3 2 1 5 5 C 1.50696 * 109.47507 * 185.30110 * 3 2 1 6 6 O 1.21273 * 120.00420 * 259.43711 * 5 3 2 7 7 N 1.34775 * 119.99646 * 79.43875 * 5 3 2 8 8 C 1.46933 * 120.63221 * 355.01834 * 7 5 3 9 9 C 1.53192 * 108.77372 * 126.37071 * 8 7 5 10 10 C 1.53040 * 109.31087 * 54.63768 * 9 8 7 11 11 C 1.53001 * 109.46079 * 178.62588 * 10 9 8 12 12 N 1.46502 * 109.46266 * 58.65652 * 10 9 8 13 13 C 1.36932 * 120.00269 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00124 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00246 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99435 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00047 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46898 * 269.99503 * 17 15 13 19 19 H 1.48493 * 109.47093 * 30.00047 * 17 15 13 20 20 H 1.48505 * 109.46842 * 149.99970 * 17 15 13 21 21 C 1.53040 * 109.52966 * 298.64122 * 10 9 8 22 22 C 1.46930 * 120.63384 * 175.00138 * 7 5 3 23 23 N 1.46505 * 109.46603 * 65.30711 * 3 2 1 24 24 C 1.46766 * 124.34490 * 239.72638 * 23 3 2 25 25 C 1.54662 * 105.38052 * 162.85388 * 24 23 3 26 26 C 1.54626 * 101.68437 * 25.76831 * 25 24 23 27 27 C 1.34416 * 124.35270 * 60.02303 * 23 3 2 28 28 O 1.21274 * 124.94055 * 0.38889 * 27 23 3 29 29 H 1.09004 * 109.47384 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46765 * 299.99691 * 1 2 3 31 31 H 1.09000 * 109.47402 * 59.99482 * 1 2 3 32 32 H 1.09004 * 109.46765 * 240.00309 * 2 1 3 33 33 H 1.09000 * 109.47402 * 120.00518 * 2 1 3 34 34 H 1.09003 * 109.58323 * 6.58441 * 8 7 5 35 35 H 1.08996 * 109.70602 * 246.23068 * 8 7 5 36 36 H 1.08998 * 109.50031 * 294.68452 * 9 8 7 37 37 H 1.09004 * 109.52167 * 174.60217 * 9 8 7 38 38 H 1.09003 * 109.46910 * 300.02613 * 11 10 9 39 39 H 1.09003 * 109.46901 * 60.02434 * 11 10 9 40 40 H 1.08997 * 109.47347 * 180.02562 * 11 10 9 41 41 H 0.97001 * 119.99440 * 359.96432 * 12 10 9 42 42 H 0.96997 * 120.00787 * 0.02562 * 16 15 13 43 43 H 1.09003 * 109.49751 * 181.31481 * 21 10 9 44 44 H 1.09001 * 109.49258 * 301.40271 * 21 10 9 45 45 H 1.09008 * 109.58381 * 353.41394 * 22 7 5 46 46 H 1.08994 * 109.58739 * 113.83416 * 22 7 5 47 47 H 1.09008 * 110.24643 * 281.98051 * 24 23 3 48 48 H 1.09003 * 110.24749 * 43.98341 * 24 23 3 49 49 H 1.08995 * 111.19269 * 267.59081 * 25 24 23 50 50 H 1.09003 * 110.82368 * 143.77480 * 25 24 23 51 51 H 1.09007 * 110.48618 * 216.31209 * 26 25 24 52 52 H 1.08996 * 110.48984 * 93.66441 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6012 1.9830 -0.8386 5 6 3.5413 1.4444 -0.1313 6 8 4.2356 1.6059 0.8498 7 7 4.1123 1.2669 -1.3391 8 6 3.2903 0.9620 -2.5182 9 6 3.6141 1.9755 -3.6203 10 6 5.1212 1.9699 -3.8862 11 6 5.4441 2.9564 -5.0103 12 7 5.5419 0.6238 -4.2825 13 6 6.8567 0.3752 -4.5734 14 1 7.5836 1.1714 -4.5103 15 6 7.2555 -0.9005 -4.9484 16 7 6.3698 -1.8712 -5.0238 17 14 9.0492 -1.2397 -5.3445 18 1 9.2887 -1.0088 -6.7918 19 1 9.9124 -0.3306 -4.5486 20 1 9.3723 -2.6496 -5.0081 21 6 5.8665 2.3836 -2.6152 22 6 5.5685 1.3748 -1.5019 23 7 1.6588 2.0951 1.2550 24 6 0.8191 3.2957 1.3421 25 6 0.3333 3.3509 2.8095 26 6 1.4547 2.5764 3.5399 27 6 2.0377 1.6747 2.4742 28 8 2.7439 0.7124 2.6886 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.2347 1.0321 -2.2558 35 1 3.5129 -0.0450 -2.8710 36 1 3.3045 2.9709 -3.3016 37 1 3.0827 1.7039 -4.5325 38 1 4.9138 2.6616 -5.9159 39 1 5.1311 3.9581 -4.7157 40 1 6.5174 2.9522 -5.2002 41 1 4.8891 -0.0915 -4.3387 42 1 5.4385 -1.6952 -4.8178 43 1 6.9385 2.4020 -2.8117 44 1 5.5358 3.3751 -2.3060 45 1 6.0161 1.7175 -0.5689 46 1 5.9793 0.4017 -1.7708 47 1 1.4042 4.1835 1.1020 48 1 -0.0325 3.2102 0.6671 49 1 -0.6271 2.8488 2.9257 50 1 0.2782 4.3812 3.1609 51 1 1.0402 1.9840 4.3558 52 1 2.2126 3.2647 3.9137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724962630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:35 Heat of formation + Delta-G solvation = -73.376333 kcal Electronic energy + Delta-G solvation = -31904.292751 eV Core-core repulsion = 27903.178796 eV Total energy + Delta-G solvation = -4001.113955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06638 -40.83522 -39.21168 -37.40198 -36.34659 -35.81374 -34.34036 -32.22627 -31.97055 -30.65436 -29.47569 -28.41606 -27.85526 -25.79500 -24.34794 -24.27912 -23.18527 -22.69198 -21.65496 -20.31199 -19.55507 -18.92097 -18.55493 -17.86075 -17.22522 -16.84119 -16.71579 -16.31601 -15.99846 -15.87358 -15.43296 -15.23937 -15.16452 -14.86255 -14.60630 -14.50356 -14.24380 -14.20890 -13.81827 -13.74369 -13.60725 -13.34585 -13.23961 -12.96255 -12.80645 -12.68549 -12.64923 -12.41909 -12.30061 -12.18067 -12.15209 -12.05445 -11.92569 -11.79940 -11.75566 -11.46867 -11.07219 -10.88303 -10.83966 -10.58978 -9.72514 -9.61777 -8.99438 -8.27785 -5.20590 1.46040 1.56377 1.61247 1.65845 1.78778 1.86300 2.22431 2.72707 3.29501 3.48058 3.49832 3.64595 3.69321 3.76183 3.83038 3.88174 3.97587 4.08941 4.09498 4.16533 4.20649 4.32944 4.37127 4.42441 4.49918 4.54662 4.67691 4.70297 4.71445 4.74603 4.85051 4.87645 4.91031 4.95961 5.01117 5.01410 5.05723 5.10862 5.12163 5.23657 5.25692 5.27422 5.31290 5.52135 5.54114 5.61728 5.73306 6.22036 6.40762 6.60896 7.07939 7.20121 7.32846 8.11546 8.21455 9.24454 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.003117 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.081385 B = 8980.378514 C = 9141.894668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.152 3.848 4 H 0.149 0.851 5 C 0.490 3.510 6 O -0.571 6.571 7 N -0.599 5.599 8 C 0.109 3.891 9 C -0.123 4.123 10 C 0.192 3.808 11 C -0.141 4.141 12 N -0.735 5.735 13 C -0.300 4.300 14 H 0.062 0.938 15 C -0.107 4.107 16 N -0.982 5.982 17 Si 1.116 2.884 18 H -0.286 1.286 19 H -0.280 1.280 20 H -0.301 1.301 21 C -0.120 4.120 22 C 0.133 3.867 23 N -0.609 5.609 24 C 0.095 3.905 25 C -0.113 4.113 26 C -0.152 4.152 27 C 0.502 3.498 28 O -0.572 6.572 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.119 0.881 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.360 0.640 42 H 0.245 0.755 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.106 0.894 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.688 16.031 10.210 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.166 0.834 5 C 0.277 3.723 6 O -0.449 6.449 7 N -0.332 5.332 8 C -0.013 4.013 9 C -0.161 4.161 10 C 0.102 3.898 11 C -0.200 4.200 12 N -0.377 5.377 13 C -0.432 4.432 14 H 0.080 0.920 15 C -0.298 4.298 16 N -0.632 5.632 17 Si 0.944 3.056 18 H -0.213 1.213 19 H -0.205 1.205 20 H -0.228 1.228 21 C -0.160 4.160 22 C 0.010 3.990 23 N -0.343 5.343 24 C -0.026 4.026 25 C -0.151 4.151 26 C -0.193 4.193 27 C 0.291 3.709 28 O -0.450 6.450 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.193 0.807 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.134 0.866 51 H 0.124 0.876 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.692 14.627 10.326 25.884 hybrid contribution -0.054 0.186 0.355 0.404 sum -18.746 14.813 10.680 26.171 Atomic orbital electron populations 1.21655 0.91445 1.02765 1.03254 1.21857 0.99460 0.93560 1.02491 1.20932 0.89073 0.96680 0.88831 0.83356 1.21726 0.92418 0.75978 0.82149 1.90704 1.65547 1.50704 1.37948 1.48132 1.07374 1.69364 1.08314 1.21920 0.95759 0.98758 0.84867 1.22096 0.94720 1.00564 0.98756 1.19819 0.93237 0.85036 0.91702 1.22098 1.00591 0.98732 0.98629 1.42652 1.06020 1.06811 1.82234 1.20143 0.86971 0.96315 1.39751 0.92001 1.26728 1.08855 0.92312 1.01902 1.70952 1.02612 1.34192 1.55417 0.82722 0.71411 0.75020 0.76418 1.21348 1.20545 1.22796 1.22161 1.00658 0.97467 0.95755 1.21150 0.80500 0.99288 0.98070 1.48201 1.51818 1.29985 1.04321 1.22527 0.94660 0.85634 0.99816 1.22651 0.97525 1.02929 0.91953 1.22370 1.00560 0.99061 0.97266 1.21699 0.78747 0.84529 0.85914 1.90695 1.38584 1.31028 1.84674 0.92134 0.92262 0.89665 0.90420 0.93889 0.86330 0.93133 0.88438 0.89282 0.93448 0.91054 0.94921 0.80714 0.94470 0.93024 0.90974 0.92277 0.94237 0.90693 0.87038 0.88169 0.86559 0.87603 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.80 71.98 0.71 -1.26 16 2 C -0.13 -3.15 5.02 30.59 0.15 -3.00 16 3 C 0.15 3.48 1.80 44.24 0.08 3.56 16 4 H 0.15 2.11 6.75 -2.39 -0.02 2.09 16 5 C 0.49 16.67 6.85 87.66 0.60 17.27 16 6 O -0.57 -25.21 13.53 17.49 0.24 -24.98 16 7 N -0.60 -19.87 2.97 -818.96 -2.43 -22.30 16 8 C 0.11 2.89 5.22 86.36 0.45 3.34 16 9 C -0.12 -3.13 4.96 30.67 0.15 -2.97 16 10 C 0.19 6.68 0.74 3.63 0.00 6.68 16 11 C -0.14 -4.60 8.44 71.98 0.61 -3.99 16 12 N -0.73 -33.58 4.13 -303.22 -1.25 -34.83 16 13 C -0.30 -15.97 8.68 84.04 0.73 -15.24 16 14 H 0.06 3.29 6.70 -2.91 -0.02 3.27 16 15 C -0.11 -6.11 5.50 84.86 0.47 -5.64 16 16 N -0.98 -60.70 13.70 21.65 0.30 -60.41 16 17 Si 1.12 53.16 29.92 68.60 2.05 55.21 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 21 C -0.12 -4.31 4.70 30.66 0.14 -4.16 16 22 C 0.13 5.31 6.16 86.35 0.53 5.84 16 23 N -0.61 -12.91 2.22 -797.83 -1.77 -14.68 16 24 C 0.09 0.92 7.31 86.89 0.64 1.56 16 25 C -0.11 -0.76 7.19 31.71 0.23 -0.53 16 26 C -0.15 -2.45 6.86 30.59 0.21 -2.24 16 27 C 0.50 14.09 6.74 87.90 0.59 14.68 16 28 O -0.57 -23.31 14.70 17.49 0.26 -23.05 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.83 7.76 -2.39 -0.02 0.81 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.83 6.77 -2.39 -0.02 1.81 16 33 H 0.04 1.39 6.64 -2.39 -0.02 1.37 16 34 H 0.12 2.08 4.96 -2.39 -0.01 2.07 16 35 H 0.05 1.64 6.94 -2.39 -0.02 1.62 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.03 1.20 7.27 -2.39 -0.02 1.18 16 41 H 0.36 17.32 5.30 -92.71 -0.49 16.83 16 42 H 0.24 14.88 6.77 -92.71 -0.63 14.25 16 43 H 0.05 2.07 7.31 -2.39 -0.02 2.05 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.51 7.04 -2.38 -0.02 2.50 16 46 H 0.04 1.90 7.74 -2.39 -0.02 1.88 16 47 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.12 0.22 8.14 -2.39 -0.02 0.21 16 51 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 52 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -85.86 392.25 4.24 -81.62 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.56 Total: 29.52 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 6.29 Total: 13.89 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -5.16 Total: -132.22 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: 0.49 Total: -48.03 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 2.05 Total: 55.21 kcal Total: -85.86 4.24 -81.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724962630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.248 kcal (2) G-P(sol) polarization free energy of solvation -85.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds