Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.09000 * 109.46870 * 55.22230 * 3 2 1 5 5 C 1.50706 * 109.46879 * 175.22400 * 3 2 1 6 6 O 1.21278 * 119.99998 * 106.38909 * 5 3 2 7 7 N 1.34773 * 119.99668 * 286.38903 * 5 3 2 8 8 C 1.46927 * 120.63250 * 5.16065 * 7 5 3 9 9 C 1.52763 * 109.00821 * 233.58351 * 8 7 5 10 10 C 1.53043 * 109.38278 * 305.58732 * 9 8 7 11 11 C 1.52997 * 109.45920 * 181.25796 * 10 9 8 12 12 N 1.46490 * 109.45243 * 301.22877 * 10 9 8 13 13 C 1.36938 * 120.00157 * 300.05990 * 12 10 9 14 14 H 1.08005 * 119.99427 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00588 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99711 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46930 * 59.99833 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47247 * 300.00035 * 17 15 13 21 21 C 1.53043 * 109.53598 * 61.24599 * 10 9 8 22 22 C 1.46923 * 120.62917 * 185.44288 * 7 5 3 23 23 N 1.46490 * 109.47106 * 295.22372 * 3 2 1 24 24 C 1.46765 * 124.34928 * 119.99899 * 23 3 2 25 25 C 1.54489 * 105.47444 * 162.97007 * 24 23 3 26 26 C 1.54628 * 101.76390 * 25.41645 * 25 24 23 27 27 C 1.34746 * 124.30036 * 299.94736 * 23 3 2 28 28 O 1.21280 * 125.12428 * 0.43546 * 27 23 3 29 29 H 1.08996 * 109.47206 * 300.00277 * 1 2 3 30 30 H 1.09007 * 109.46579 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47206 * 239.99723 * 2 1 3 33 33 H 1.08993 * 109.46736 * 120.00042 * 2 1 3 34 34 H 1.08992 * 109.58765 * 353.41865 * 8 7 5 35 35 H 1.09001 * 109.58652 * 113.84834 * 8 7 5 36 36 H 1.09000 * 109.56645 * 185.55652 * 9 8 7 37 37 H 1.09003 * 109.38625 * 65.51362 * 9 8 7 38 38 H 1.09005 * 109.47760 * 299.93575 * 11 10 9 39 39 H 1.09006 * 109.47271 * 59.93788 * 11 10 9 40 40 H 1.09001 * 109.47162 * 179.97438 * 11 10 9 41 41 H 0.97002 * 120.00123 * 120.06147 * 12 10 9 42 42 H 0.97004 * 120.00204 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.49992 * 178.68283 * 21 10 9 44 44 H 1.08992 * 109.52785 * 58.59870 * 21 10 9 45 45 H 1.08999 * 109.59152 * 246.15946 * 22 7 5 46 46 H 1.09004 * 109.58523 * 6.57795 * 22 7 5 47 47 H 1.09003 * 110.24666 * 43.97308 * 24 23 3 48 48 H 1.08994 * 110.24965 * 281.96944 * 24 23 3 49 49 H 1.09001 * 110.96958 * 267.29885 * 25 24 23 50 50 H 1.08999 * 111.00065 * 143.55114 * 25 24 23 51 51 H 1.09007 * 110.48178 * 93.87485 * 26 25 24 52 52 H 1.08991 * 110.48990 * 216.39205 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5424 1.4441 0.1183 6 8 4.2264 1.7130 -0.8464 7 7 4.1259 1.1467 1.2962 8 6 3.3177 0.7096 2.4427 9 6 3.6361 1.5984 3.6437 10 6 5.1453 1.5877 3.8975 11 6 5.4627 2.4524 5.1191 12 7 5.5888 0.2135 4.1437 13 6 5.0703 -0.4956 5.1942 14 1 4.3340 -0.0417 5.8410 15 6 5.4902 -1.7980 5.4272 16 7 6.3871 -2.3512 4.6387 17 14 4.7824 -2.7654 6.8598 18 1 3.3114 -2.8865 6.6966 19 1 5.3906 -4.1198 6.8912 20 1 5.0829 -2.0588 8.1310 21 6 5.8741 2.1473 2.6736 22 6 5.5816 1.2592 1.4601 23 7 1.6479 2.0991 -1.2494 24 6 0.8027 3.2965 -1.3258 25 6 1.0193 3.8639 -2.7464 26 6 1.4406 2.5993 -3.5301 27 6 2.0182 1.6809 -2.4757 28 8 2.7112 0.7119 -2.7027 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 2.2592 0.7948 2.1973 35 1 3.5566 -0.3260 2.6847 36 1 3.1164 1.2217 4.5246 37 1 3.3092 2.6174 3.4364 38 1 5.1332 3.4752 4.9360 39 1 4.9438 2.0541 5.9911 40 1 6.5375 2.4446 5.3004 41 1 6.2499 -0.1943 3.5626 42 1 6.6809 -3.2612 4.8017 43 1 6.9473 2.1612 2.8641 44 1 5.5267 3.1611 2.4747 45 1 6.0090 0.2694 1.6201 46 1 6.0163 1.7070 0.5664 47 1 1.1129 4.0256 -0.5772 48 1 -0.2441 3.0292 -1.1820 49 1 1.8147 4.6092 -2.7517 50 1 0.0946 4.2804 -3.1458 51 1 0.5742 2.1382 -4.0044 52 1 2.1961 2.8467 -4.2758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724962632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -51.704079 kcal Electronic energy + Delta-G solvation = -31931.137149 eV Core-core repulsion = 27930.962974 eV Total energy + Delta-G solvation = -4000.174175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.90779 -39.54393 -37.67633 -36.32092 -35.06160 -34.33131 -32.32692 -31.10348 -30.78053 -29.07945 -28.10870 -27.66631 -26.79827 -23.95710 -23.03220 -22.79601 -22.11415 -22.02293 -20.27573 -18.84949 -18.00893 -17.14804 -17.07720 -16.86801 -16.46462 -15.45708 -15.06740 -14.76535 -14.73165 -14.29779 -13.97443 -13.78865 -13.78147 -13.68463 -13.45869 -13.34405 -13.13003 -13.03143 -12.68135 -12.60002 -12.45356 -12.08524 -11.84433 -11.74607 -11.56144 -11.36852 -11.27353 -11.20508 -11.16971 -11.00959 -10.89427 -10.78834 -10.70501 -10.31082 -10.26317 -9.68310 -9.67087 -9.53278 -9.45634 -8.94597 -8.61733 -8.14668 -6.97858 -5.78247 -3.07141 2.59825 2.87369 2.92610 3.40524 3.45384 3.46415 3.47503 4.22870 4.27298 4.56068 4.57567 4.63043 4.80537 4.83989 4.93186 5.16881 5.21687 5.23332 5.29554 5.31157 5.38046 5.43503 5.46599 5.55726 5.58577 5.61805 5.63551 5.71778 5.74688 5.81619 5.88551 5.97938 6.04504 6.05255 6.16795 6.22392 6.28398 6.39056 6.42280 6.48922 6.52512 6.54917 6.77290 6.87282 7.01166 7.07722 7.14863 7.68094 7.80293 8.28829 8.39737 8.52175 9.51206 10.08392 10.43635 11.44080 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003329 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.179492 B = 8408.412821 C = 8925.124492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.147 3.853 4 H 0.108 0.892 5 C 0.501 3.499 6 O -0.529 6.529 7 N -0.598 5.598 8 C 0.112 3.888 9 C -0.135 4.135 10 C 0.198 3.802 11 C -0.150 4.150 12 N -0.716 5.716 13 C -0.234 4.234 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.128 4.128 22 C 0.119 3.881 23 N -0.610 5.610 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.155 4.155 27 C 0.524 3.476 28 O -0.506 6.506 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 13.838 -10.698 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C 0.041 3.959 4 H 0.125 0.875 5 C 0.286 3.714 6 O -0.405 6.405 7 N -0.332 5.332 8 C -0.011 4.011 9 C -0.176 4.176 10 C 0.107 3.893 11 C -0.209 4.209 12 N -0.359 5.359 13 C -0.365 4.365 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.167 4.167 22 C -0.004 4.004 23 N -0.346 5.346 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.312 3.688 28 O -0.380 6.380 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.118 0.882 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.542 13.327 -11.145 22.027 hybrid contribution -0.155 -0.677 0.986 1.206 sum -13.697 12.649 -10.159 21.232 Atomic orbital electron populations 1.21693 0.94752 1.02037 1.01546 1.21986 0.96856 0.94257 1.04939 1.20839 0.92591 0.95663 0.86836 0.87452 1.20705 0.90256 0.77542 0.82886 1.90692 1.64645 1.48670 1.36504 1.48031 1.08126 1.66025 1.10978 1.21766 0.93238 1.00977 0.85085 1.22247 0.99793 0.97727 0.97788 1.19515 0.91213 0.86918 0.91698 1.22222 1.01355 0.97493 0.99840 1.42508 1.50024 1.08870 1.34473 1.19054 1.18316 0.94367 1.04793 0.91248 1.24699 0.99561 0.97404 0.99053 1.69642 1.34029 1.14656 1.39590 0.86360 0.78367 0.79479 0.82498 1.21349 1.21839 1.21435 1.22082 1.01061 0.98461 0.95049 1.21529 0.79705 1.00968 0.98175 1.48028 1.51531 1.29616 1.05393 1.22063 0.94654 0.86733 0.98323 1.22565 1.02925 0.97201 0.94092 1.22310 1.02906 0.96084 0.98206 1.20748 0.79165 0.85073 0.83833 1.90727 1.36076 1.28049 1.83108 0.92601 0.92883 0.92218 0.89744 0.89518 0.91390 0.89027 0.90599 0.93460 0.94668 0.92559 0.93155 0.78100 0.93484 0.90838 0.92117 0.90564 0.90147 0.90615 0.91056 0.90023 0.89325 0.88202 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.80 37.16 0.36 -1.04 16 2 C -0.14 -1.84 4.94 -26.73 -0.13 -1.97 16 3 C 0.15 1.93 1.82 -69.08 -0.13 1.81 16 4 H 0.11 1.14 7.11 -51.93 -0.37 0.77 16 5 C 0.50 8.56 6.86 -10.98 -0.08 8.48 16 6 O -0.53 -10.96 13.73 -14.58 -0.20 -11.16 16 7 N -0.60 -10.02 2.98 -173.03 -0.52 -10.54 16 8 C 0.11 1.77 4.97 -3.93 -0.02 1.75 16 9 C -0.14 -2.16 4.69 -26.83 -0.13 -2.29 16 10 C 0.20 3.56 0.74 -131.78 -0.10 3.46 16 11 C -0.15 -2.57 8.44 37.16 0.31 -2.26 16 12 N -0.72 -16.19 4.14 -47.20 -0.20 -16.39 16 13 C -0.23 -5.90 8.68 -15.06 -0.13 -6.03 16 14 H 0.07 1.70 6.70 -52.48 -0.35 1.35 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.02 13.06 55.49 0.72 -26.29 16 17 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.13 -2.09 4.96 -26.61 -0.13 -2.22 16 22 C 0.12 2.09 6.15 -3.71 -0.02 2.07 16 23 N -0.61 -7.34 2.17 -166.06 -0.36 -7.70 16 24 C 0.11 0.79 7.30 -3.12 -0.02 0.77 16 25 C -0.13 -0.83 7.18 -25.09 -0.18 -1.01 16 26 C -0.15 -1.40 6.85 -26.74 -0.18 -1.59 16 27 C 0.52 7.48 6.69 -10.71 -0.07 7.41 16 28 O -0.51 -9.74 14.94 -14.58 -0.22 -9.96 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.50 7.75 -51.92 -0.40 0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.35 6.64 -51.93 -0.34 1.00 16 33 H 0.09 1.16 6.06 -51.93 -0.31 0.84 16 34 H 0.07 0.87 4.75 -51.93 -0.25 0.63 16 35 H 0.09 1.76 7.74 -51.93 -0.40 1.36 16 36 H 0.08 1.28 7.31 -51.93 -0.38 0.90 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.03 7.27 -51.93 -0.38 0.65 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.38 9.55 6.46 -40.82 -0.26 9.28 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.50 6.94 -51.93 -0.36 1.14 16 46 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 52 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -33.55 393.38 -9.41 -42.95 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.81 Total: 9.70 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.74 Total: 6.95 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.35 Total: -60.91 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.42 Total: -21.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.55 -9.41 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724962632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.751 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds